Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF791

Experiment: LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF789 and GFF790 overlap by 1 nucleotidesGFF790 and GFF791 overlap by 4 nucleotides GFF789 - DNA primase (EC 2.7.7.-), phage-associated, at 138,829 to 139,611 GFF789 GFF790 - FIG01220455: hypothetical protein, at 139,611 to 140,471 GFF790 GFF791 - Phage antitermination protein Q, at 140,468 to 141,283 GFF791 Position (kb) 140 141 142Strain fitness (log2 ratio) -1 0 1 2 3at 139.548 kb on + strandat 139.549 kb on - strandat 139.616 kb on + strandat 139.616 kb on + strandat 139.617 kb on - strandat 139.634 kb on + strandat 139.682 kb on - strandat 139.710 kb on - strand, within GFF790at 139.710 kb on - strand, within GFF790at 139.849 kb on - strand, within GFF790at 139.916 kb on + strand, within GFF790at 139.980 kb on - strand, within GFF790at 140.030 kb on + strand, within GFF790at 140.079 kb on - strand, within GFF790at 140.152 kb on + strand, within GFF790at 140.161 kb on - strand, within GFF790at 140.170 kb on + strand, within GFF790at 140.170 kb on + strand, within GFF790at 140.171 kb on - strand, within GFF790at 140.187 kb on - strand, within GFF790at 140.412 kb on + strandat 140.414 kb on + strandat 140.566 kb on + strand, within GFF791at 140.568 kb on + strand, within GFF791at 140.746 kb on + strand, within GFF791at 140.746 kb on + strand, within GFF791at 140.747 kb on - strand, within GFF791at 140.747 kb on - strand, within GFF791at 140.747 kb on - strand, within GFF791at 140.892 kb on - strand, within GFF791at 141.226 kb on - strandat 141.230 kb on + strandat 141.231 kb on - strandat 141.358 kb on - strandat 141.608 kb on + strandat 141.624 kb on + strandat 141.783 kb on - strandat 141.783 kb on - strandat 141.783 kb on - strandat 141.817 kb on + strandat 141.913 kb on + strandat 141.926 kb on + strandat 142.027 kb on - strandat 142.029 kb on - strandat 142.037 kb on - strandat 142.037 kb on - strandat 142.098 kb on + strandat 142.231 kb on - strandat 142.243 kb on + strandat 142.244 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
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139,548 + -0.1
139,549 - -0.1
139,616 + -0.3
139,616 + -0.2
139,617 - +0.4
139,634 + -1.0
139,682 - -0.7
139,710 - GFF790 0.11 +0.0
139,710 - GFF790 0.11 +0.3
139,849 - GFF790 0.28 -0.7
139,916 + GFF790 0.35 -0.5
139,980 - GFF790 0.43 +1.1
140,030 + GFF790 0.49 -1.5
140,079 - GFF790 0.54 -0.0
140,152 + GFF790 0.63 +0.4
140,161 - GFF790 0.64 +1.3
140,170 + GFF790 0.65 +0.7
140,170 + GFF790 0.65 +0.6
140,171 - GFF790 0.65 +0.5
140,187 - GFF790 0.67 +0.3
140,412 + +1.7
140,414 + -0.1
140,566 + GFF791 0.12 -0.7
140,568 + GFF791 0.12 +3.1
140,746 + GFF791 0.34 -1.3
140,746 + GFF791 0.34 +1.4
140,747 - GFF791 0.34 -0.0
140,747 - GFF791 0.34 +0.6
140,747 - GFF791 0.34 +0.8
140,892 - GFF791 0.52 +0.0
141,226 - -0.2
141,230 + -0.5
141,231 - -0.3
141,358 - -0.4
141,608 + -0.1
141,624 + -0.0
141,783 - +0.8
141,783 - -0.2
141,783 - +2.6
141,817 + +0.3
141,913 + -0.3
141,926 + +0.3
142,027 - -0.5
142,029 - -0.4
142,037 - -0.1
142,037 - +0.3
142,098 + -0.8
142,231 - +1.1
142,243 + -0.2
142,244 - +0.6

Or see this region's nucleotide sequence