Experiment: LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF533 and GFF534 are separated by 4 nucleotides GFF534 and GFF535 are separated by 23 nucleotides GFF535 and GFF536 are separated by 199 nucleotides
GFF533 - Putative preQ0 transporter, at 265,489 to 266,229
GFF533
GFF534 - tRNA 5-methylaminomethyl-2-thiouridine synthase TusA, at 266,234 to 266,569
GFF534
GFF535 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 266,593 to 268,236
GFF535
GFF536 - Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4), at 268,436 to 270,634
GFF536
Position (kb) 266
267
268
269 Strain fitness (log2 ratio) -1
0
1
2
3 at 265.607 kb on + strand, within GFF533 at 265.644 kb on + strand, within GFF533 at 265.807 kb on - strand, within GFF533 at 265.883 kb on + strand, within GFF533 at 265.883 kb on + strand, within GFF533 at 265.884 kb on - strand, within GFF533 at 265.904 kb on + strand, within GFF533 at 265.904 kb on + strand, within GFF533 at 266.102 kb on - strand, within GFF533 at 266.102 kb on - strand, within GFF533 at 266.126 kb on - strand, within GFF533 at 266.142 kb on + strand, within GFF533 at 266.208 kb on + strand at 266.211 kb on + strand at 266.212 kb on - strand at 266.582 kb on + strand at 266.582 kb on + strand at 266.583 kb on - strand at 266.585 kb on + strand at 266.586 kb on - strand at 266.650 kb on + strand at 266.877 kb on + strand, within GFF535 at 267.031 kb on + strand, within GFF535 at 267.088 kb on + strand, within GFF535 at 267.112 kb on - strand, within GFF535 at 267.199 kb on + strand, within GFF535 at 267.199 kb on + strand, within GFF535 at 267.199 kb on + strand, within GFF535 at 267.199 kb on + strand, within GFF535 at 267.305 kb on - strand, within GFF535 at 267.407 kb on + strand, within GFF535 at 267.408 kb on - strand, within GFF535 at 267.412 kb on - strand, within GFF535 at 267.518 kb on - strand, within GFF535 at 267.586 kb on + strand, within GFF535 at 267.631 kb on + strand, within GFF535 at 267.637 kb on - strand, within GFF535 at 267.641 kb on - strand, within GFF535 at 267.701 kb on - strand, within GFF535 at 267.740 kb on + strand, within GFF535 at 267.741 kb on - strand, within GFF535 at 267.742 kb on + strand, within GFF535 at 267.742 kb on + strand, within GFF535 at 267.743 kb on - strand, within GFF535 at 267.743 kb on - strand, within GFF535 at 267.798 kb on - strand, within GFF535 at 267.802 kb on - strand, within GFF535 at 267.843 kb on - strand, within GFF535 at 267.917 kb on + strand, within GFF535 at 268.189 kb on + strand at 268.458 kb on - strand at 268.532 kb on + strand at 268.702 kb on + strand, within GFF536
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI remove 265,607 + GFF533 0.16 +0.7 265,644 + GFF533 0.21 +0.5 265,807 - GFF533 0.43 +0.0 265,883 + GFF533 0.53 +0.0 265,883 + GFF533 0.53 +0.3 265,884 - GFF533 0.53 +0.0 265,904 + GFF533 0.56 +0.3 265,904 + GFF533 0.56 +0.3 266,102 - GFF533 0.83 +0.6 266,102 - GFF533 0.83 -0.1 266,126 - GFF533 0.86 +0.6 266,142 + GFF533 0.88 -0.2 266,208 + +0.7 266,211 + -0.6 266,212 - -0.5 266,582 + +0.0 266,582 + +0.3 266,583 - -0.6 266,585 + -0.4 266,586 - -0.7 266,650 + +0.2 266,877 + GFF535 0.17 +0.3 267,031 + GFF535 0.27 +0.9 267,088 + GFF535 0.30 -0.4 267,112 - GFF535 0.32 -0.0 267,199 + GFF535 0.37 -0.3 267,199 + GFF535 0.37 -0.2 267,199 + GFF535 0.37 -1.7 267,199 + GFF535 0.37 +0.2 267,305 - GFF535 0.43 +0.3 267,407 + GFF535 0.50 -0.3 267,408 - GFF535 0.50 +0.3 267,412 - GFF535 0.50 -0.0 267,518 - GFF535 0.56 -0.6 267,586 + GFF535 0.60 -0.1 267,631 + GFF535 0.63 +0.5 267,637 - GFF535 0.64 -0.7 267,641 - GFF535 0.64 +0.3 267,701 - GFF535 0.67 +2.9 267,740 + GFF535 0.70 +1.1 267,741 - GFF535 0.70 -0.4 267,742 + GFF535 0.70 +0.0 267,742 + GFF535 0.70 +0.7 267,743 - GFF535 0.70 -0.2 267,743 - GFF535 0.70 -0.2 267,798 - GFF535 0.73 +0.2 267,802 - GFF535 0.74 +0.2 267,843 - GFF535 0.76 +0.8 267,917 + GFF535 0.81 +1.8 268,189 + +0.6 268,458 - +1.4 268,532 + +0.3 268,702 + GFF536 0.12 +0.8
Or see this region's nucleotide sequence