Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4766

Experiment: LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4765 and GFF4766 are separated by 672 nucleotides GFF4765 - Type III secretion thermoregulatory protein (LcrF,VirF,transcription regulation of virulence plasmid), at 73,065 to 73,814 GFF4765 GFF4766 - Invasion protein invH precursor, at 74,487 to 74,615 GFF4766 Position (kb) 74 75Strain fitness (log2 ratio) -1 0 1 2 3at 73.534 kb on + strand, within GFF4765at 73.600 kb on - strand, within GFF4765at 73.715 kb on + strand, within GFF4765at 73.716 kb on - strand, within GFF4765at 74.301 kb on - strandat 74.569 kb on + strand, within GFF4766at 74.612 kb on - strandat 74.983 kb on - strandat 75.076 kb on + strandat 75.116 kb on + strandat 75.253 kb on - strandat 75.303 kb on + strandat 75.329 kb on + strandat 75.365 kb on + strandat 75.373 kb on + strandat 75.452 kb on + strandat 75.452 kb on + strandat 75.477 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
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73,534 + GFF4765 0.63 +1.4
73,600 - GFF4765 0.71 +0.1
73,715 + GFF4765 0.87 +1.5
73,716 - GFF4765 0.87 +3.7
74,301 - +2.8
74,569 + GFF4766 0.64 -1.4
74,612 - +1.4
74,983 - -0.6
75,076 + -0.1
75,116 + +0.4
75,253 - +0.9
75,303 + -0.7
75,329 + +1.4
75,365 + +0.6
75,373 + -0.4
75,452 + +0.0
75,452 + +0.2
75,477 - -0.4

Or see this region's nucleotide sequence