Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF4488

Experiment: LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF4487 and GFF4488 are separated by 11 nucleotidesGFF4488 and GFF4489 are separated by 45 nucleotides GFF4487 - FIG00638355: hypothetical protein, at 269,892 to 271,010 GFF4487 GFF4488 - '4'-phosphopantetheinyl transferase (EC 2.7.8.-) [enterobactin] siderophore' transl_table=11, at 271,022 to 271,726 GFF4488 GFF4489 - TonB-dependent receptor; Outer membrane receptor for ferric enterobactin and colicins B, D, at 271,772 to 274,027 GFF4489 Position (kb) 271 272Strain fitness (log2 ratio) -2 -1 0 1 2 3at 270.080 kb on + strand, within GFF4487at 270.081 kb on - strand, within GFF4487at 270.081 kb on - strand, within GFF4487at 270.112 kb on + strand, within GFF4487at 270.171 kb on - strand, within GFF4487at 270.255 kb on - strand, within GFF4487at 270.303 kb on + strand, within GFF4487at 270.373 kb on + strand, within GFF4487at 270.501 kb on - strand, within GFF4487at 270.502 kb on + strand, within GFF4487at 270.527 kb on + strand, within GFF4487at 270.634 kb on - strand, within GFF4487at 270.634 kb on - strand, within GFF4487at 270.637 kb on + strand, within GFF4487at 270.674 kb on + strand, within GFF4487at 270.777 kb on - strand, within GFF4487at 270.840 kb on - strand, within GFF4487at 270.851 kb on + strand, within GFF4487at 270.852 kb on - strand, within GFF4487at 270.922 kb on - strandat 270.928 kb on + strandat 270.974 kb on + strandat 270.975 kb on - strandat 270.975 kb on - strandat 271.043 kb on + strandat 271.043 kb on + strandat 271.044 kb on - strandat 271.044 kb on - strandat 271.045 kb on + strandat 271.099 kb on + strand, within GFF4488at 271.102 kb on + strand, within GFF4488at 271.103 kb on - strand, within GFF4488at 271.108 kb on + strand, within GFF4488at 271.141 kb on + strand, within GFF4488at 271.142 kb on - strand, within GFF4488at 271.182 kb on - strand, within GFF4488at 271.261 kb on + strand, within GFF4488at 271.355 kb on - strand, within GFF4488at 271.544 kb on + strand, within GFF4488at 271.591 kb on - strand, within GFF4488at 271.629 kb on - strand, within GFF4488at 271.786 kb on + strandat 271.786 kb on + strandat 271.787 kb on - strandat 271.796 kb on - strandat 271.797 kb on + strandat 271.797 kb on + strandat 271.805 kb on - strandat 271.805 kb on - strandat 271.805 kb on - strandat 271.805 kb on - strandat 271.805 kb on - strandat 271.821 kb on + strandat 271.821 kb on + strandat 271.822 kb on - strandat 271.822 kb on - strandat 271.846 kb on + strandat 271.848 kb on + strandat 271.849 kb on - strandat 271.918 kb on + strandat 271.981 kb on + strandat 271.982 kb on - strandat 271.987 kb on - strandat 272.040 kb on + strand, within GFF4489at 272.064 kb on + strand, within GFF4489at 272.103 kb on - strand, within GFF4489at 272.189 kb on - strand, within GFF4489at 272.190 kb on + strand, within GFF4489at 272.190 kb on + strand, within GFF4489at 272.191 kb on - strand, within GFF4489at 272.191 kb on - strand, within GFF4489at 272.191 kb on - strand, within GFF4489at 272.191 kb on - strand, within GFF4489at 272.289 kb on + strand, within GFF4489at 272.289 kb on + strand, within GFF4489at 272.290 kb on - strand, within GFF4489at 272.315 kb on - strand, within GFF4489at 272.348 kb on - strand, within GFF4489at 272.348 kb on - strand, within GFF4489at 272.422 kb on + strand, within GFF4489at 272.432 kb on - strand, within GFF4489at 272.467 kb on - strand, within GFF4489at 272.547 kb on + strand, within GFF4489at 272.653 kb on + strand, within GFF4489at 272.654 kb on - strand, within GFF4489

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
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270,080 + GFF4487 0.17 +0.0
270,081 - GFF4487 0.17 +1.3
270,081 - GFF4487 0.17 -0.2
270,112 + GFF4487 0.20 -0.9
270,171 - GFF4487 0.25 -0.2
270,255 - GFF4487 0.32 -1.3
270,303 + GFF4487 0.37 -0.5
270,373 + GFF4487 0.43 +1.1
270,501 - GFF4487 0.54 -0.7
270,502 + GFF4487 0.55 +0.0
270,527 + GFF4487 0.57 -0.3
270,634 - GFF4487 0.66 -0.2
270,634 - GFF4487 0.66 -0.3
270,637 + GFF4487 0.67 +2.8
270,674 + GFF4487 0.70 +0.3
270,777 - GFF4487 0.79 -0.1
270,840 - GFF4487 0.85 -1.0
270,851 + GFF4487 0.86 +0.0
270,852 - GFF4487 0.86 -0.2
270,922 - -0.3
270,928 + +0.5
270,974 + +0.0
270,975 - +0.2
270,975 - -0.1
271,043 + -0.1
271,043 + -0.5
271,044 - -1.2
271,044 - +0.3
271,045 + +0.6
271,099 + GFF4488 0.11 +0.2
271,102 + GFF4488 0.11 +0.4
271,103 - GFF4488 0.11 -0.2
271,108 + GFF4488 0.12 +2.5
271,141 + GFF4488 0.17 +0.8
271,142 - GFF4488 0.17 +2.0
271,182 - GFF4488 0.23 +1.4
271,261 + GFF4488 0.34 +0.2
271,355 - GFF4488 0.47 +0.5
271,544 + GFF4488 0.74 +0.4
271,591 - GFF4488 0.81 -0.7
271,629 - GFF4488 0.86 -0.6
271,786 + -1.9
271,786 + +1.5
271,787 - +0.8
271,796 - +0.5
271,797 + +1.3
271,797 + -2.4
271,805 - -0.0
271,805 - +0.4
271,805 - +0.4
271,805 - +0.3
271,805 - +0.2
271,821 + +0.5
271,821 + -0.1
271,822 - -0.3
271,822 - +0.2
271,846 + +1.4
271,848 + -0.7
271,849 - -0.4
271,918 + +0.2
271,981 + +0.3
271,982 - -0.1
271,987 - +2.1
272,040 + GFF4489 0.12 -0.5
272,064 + GFF4489 0.13 -0.3
272,103 - GFF4489 0.15 -0.0
272,189 - GFF4489 0.18 +1.1
272,190 + GFF4489 0.19 -1.0
272,190 + GFF4489 0.19 -0.6
272,191 - GFF4489 0.19 +0.1
272,191 - GFF4489 0.19 +2.2
272,191 - GFF4489 0.19 -0.9
272,191 - GFF4489 0.19 -1.0
272,289 + GFF4489 0.23 -0.2
272,289 + GFF4489 0.23 +0.1
272,290 - GFF4489 0.23 -0.1
272,315 - GFF4489 0.24 -1.0
272,348 - GFF4489 0.26 -0.0
272,348 - GFF4489 0.26 -1.4
272,422 + GFF4489 0.29 -0.1
272,432 - GFF4489 0.29 -1.5
272,467 - GFF4489 0.31 +0.0
272,547 + GFF4489 0.34 -0.9
272,653 + GFF4489 0.39 +0.2
272,654 - GFF4489 0.39 +1.4

Or see this region's nucleotide sequence