Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF3743

Experiment: LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3741 and GFF3742 are separated by 2 nucleotidesGFF3742 and GFF3743 are separated by 455 nucleotidesGFF3743 and GFF3744 are separated by 53 nucleotides GFF3741 - FIG01047264: hypothetical protein, at 8,246 to 9,487 GFF3741 GFF3742 - FIG01047148: hypothetical protein, at 9,490 to 10,017 GFF3742 GFF3743 - FIG01046717: hypothetical protein, at 10,473 to 10,838 GFF3743 GFF3744 - O-antigen acetylase, at 10,892 to 12,721 GFF3744 Position (kb) 10 11Strain fitness (log2 ratio) -1 0 1at 10.015 kb on + strandat 10.524 kb on + strand, within GFF3743at 10.737 kb on + strand, within GFF3743at 11.026 kb on + strandat 11.307 kb on - strand, within GFF3744

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
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10,015 + +1.5
10,524 + GFF3743 0.14 -1.0
10,737 + GFF3743 0.72 +0.1
11,026 + -0.2
11,307 - GFF3744 0.23 +1.1

Or see this region's nucleotide sequence