Experiment: LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3629 and GFF3630 overlap by 1 nucleotides GFF3630 and GFF3631 are separated by 2 nucleotides GFF3631 and GFF3632 are separated by 353 nucleotides GFF3632 and GFF3633 are separated by 47 nucleotides
GFF3629 - FIG01045166: hypothetical protein, at 378,600 to 380,639
GFF3629
GFF3630 - Putative membrane protein, at 380,639 to 381,499
GFF3630
GFF3631 - hypothetical protein, at 381,502 to 381,693
GFF3631
GFF3632 - Transcriptional regulator SlyA, at 382,047 to 382,373
GFF3632
GFF3633 - Outer membrane lipoprotein pcp precursor, at 382,421 to 382,888
GFF3633
Position (kb) 381
382 Strain fitness (log2 ratio) -1
0
1
2
3 at 380.522 kb on - strand at 380.524 kb on + strand at 380.598 kb on - strand at 380.669 kb on - strand at 380.720 kb on + strand at 380.721 kb on - strand at 380.809 kb on - strand, within GFF3630 at 380.862 kb on + strand, within GFF3630 at 380.862 kb on + strand, within GFF3630 at 380.863 kb on - strand, within GFF3630 at 380.947 kb on + strand, within GFF3630 at 380.972 kb on - strand, within GFF3630 at 381.095 kb on + strand, within GFF3630 at 381.095 kb on + strand, within GFF3630 at 381.116 kb on - strand, within GFF3630 at 381.413 kb on - strand, within GFF3630 at 381.414 kb on + strand at 381.414 kb on + strand at 381.415 kb on - strand at 381.535 kb on + strand, within GFF3631 at 381.566 kb on - strand, within GFF3631 at 381.729 kb on + strand at 381.795 kb on + strand at 381.816 kb on - strand at 381.816 kb on - strand at 382.129 kb on + strand, within GFF3632 at 382.208 kb on + strand, within GFF3632 at 382.263 kb on - strand, within GFF3632 at 382.386 kb on + strand at 382.411 kb on - strand at 382.411 kb on - strand at 382.493 kb on - strand, within GFF3633
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI remove 380,522 - -0.1 380,524 + +0.4 380,598 - -1.2 380,669 - -0.0 380,720 + -0.1 380,721 - +3.2 380,809 - GFF3630 0.20 -0.2 380,862 + GFF3630 0.26 -0.3 380,862 + GFF3630 0.26 +0.3 380,863 - GFF3630 0.26 +1.9 380,947 + GFF3630 0.36 -0.3 380,972 - GFF3630 0.39 +0.7 381,095 + GFF3630 0.53 -0.3 381,095 + GFF3630 0.53 -0.0 381,116 - GFF3630 0.55 +0.5 381,413 - GFF3630 0.90 +0.2 381,414 + -1.0 381,414 + -0.1 381,415 - +2.3 381,535 + GFF3631 0.17 -0.3 381,566 - GFF3631 0.33 +0.0 381,729 + -0.9 381,795 + -0.1 381,816 - +0.3 381,816 - -0.1 382,129 + GFF3632 0.25 -0.1 382,208 + GFF3632 0.49 +0.3 382,263 - GFF3632 0.66 -0.2 382,386 + +0.1 382,411 - -0.4 382,411 - +0.4 382,493 - GFF3633 0.15 +1.6
Or see this region's nucleotide sequence