Experiment: LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3411 and GFF3412 are separated by 3 nucleotides GFF3412 and GFF3413 are separated by 39 nucleotides
GFF3411 - Tripeptide aminopeptidase (EC 3.4.11.4), at 175,469 to 176,698
GFF3411
GFF3412 - FIG00638667: hypothetical protein, at 176,702 to 178,036
GFF3412
GFF3413 - FIG002776: hypothetical protein, at 178,076 to 179,197
GFF3413
Position (kb) 176
177
178
179 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 175.776 kb on + strand, within GFF3411 at 176.046 kb on - strand, within GFF3411 at 176.047 kb on + strand, within GFF3411 at 176.048 kb on - strand, within GFF3411 at 176.048 kb on - strand, within GFF3411 at 176.048 kb on - strand, within GFF3411 at 176.048 kb on - strand, within GFF3411 at 176.129 kb on - strand, within GFF3411 at 176.297 kb on + strand, within GFF3411 at 176.397 kb on - strand, within GFF3411 at 176.397 kb on - strand, within GFF3411 at 176.397 kb on - strand, within GFF3411 at 176.423 kb on + strand, within GFF3411 at 176.504 kb on - strand, within GFF3411 at 176.596 kb on + strand at 176.596 kb on + strand at 176.596 kb on + strand at 176.597 kb on - strand at 176.597 kb on - strand at 176.600 kb on + strand at 176.608 kb on + strand at 176.707 kb on - strand at 176.736 kb on - strand at 176.911 kb on - strand, within GFF3412 at 176.932 kb on - strand, within GFF3412 at 176.948 kb on + strand, within GFF3412 at 177.076 kb on + strand, within GFF3412 at 177.102 kb on + strand, within GFF3412 at 177.102 kb on + strand, within GFF3412 at 177.108 kb on - strand, within GFF3412 at 177.216 kb on - strand, within GFF3412 at 177.257 kb on + strand, within GFF3412 at 177.295 kb on + strand, within GFF3412 at 177.383 kb on - strand, within GFF3412 at 177.433 kb on + strand, within GFF3412 at 177.434 kb on - strand, within GFF3412 at 177.573 kb on - strand, within GFF3412 at 177.575 kb on - strand, within GFF3412 at 177.611 kb on + strand, within GFF3412 at 177.645 kb on + strand, within GFF3412 at 177.657 kb on + strand, within GFF3412 at 177.728 kb on - strand, within GFF3412 at 177.846 kb on + strand, within GFF3412 at 177.977 kb on + strand at 177.997 kb on + strand at 178.181 kb on - strand at 178.181 kb on - strand at 178.289 kb on + strand, within GFF3413 at 178.441 kb on + strand, within GFF3413 at 178.441 kb on + strand, within GFF3413 at 178.442 kb on - strand, within GFF3413 at 178.454 kb on - strand, within GFF3413 at 178.515 kb on + strand, within GFF3413 at 178.518 kb on + strand, within GFF3413 at 178.519 kb on - strand, within GFF3413 at 178.519 kb on - strand, within GFF3413 at 178.523 kb on - strand, within GFF3413 at 178.523 kb on - strand, within GFF3413 at 178.629 kb on + strand, within GFF3413 at 178.799 kb on - strand, within GFF3413 at 178.802 kb on - strand, within GFF3413 at 178.877 kb on - strand, within GFF3413
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI remove 175,776 + GFF3411 0.25 -0.8 176,046 - GFF3411 0.47 +1.4 176,047 + GFF3411 0.47 +0.8 176,048 - GFF3411 0.47 -1.6 176,048 - GFF3411 0.47 +1.1 176,048 - GFF3411 0.47 -1.2 176,048 - GFF3411 0.47 +0.1 176,129 - GFF3411 0.54 +2.1 176,297 + GFF3411 0.67 +0.3 176,397 - GFF3411 0.75 -0.4 176,397 - GFF3411 0.75 -1.3 176,397 - GFF3411 0.75 -2.4 176,423 + GFF3411 0.78 +0.0 176,504 - GFF3411 0.84 -0.3 176,596 + -1.0 176,596 + +2.8 176,596 + +0.2 176,597 - +0.7 176,597 - -1.2 176,600 + -0.4 176,608 + +0.1 176,707 - -1.6 176,736 - -0.2 176,911 - GFF3412 0.16 -0.1 176,932 - GFF3412 0.17 +0.1 176,948 + GFF3412 0.18 -1.1 177,076 + GFF3412 0.28 +2.0 177,102 + GFF3412 0.30 -0.4 177,102 + GFF3412 0.30 -0.3 177,108 - GFF3412 0.30 +0.5 177,216 - GFF3412 0.39 -0.7 177,257 + GFF3412 0.42 +1.0 177,295 + GFF3412 0.44 -0.2 177,383 - GFF3412 0.51 -0.3 177,433 + GFF3412 0.55 -0.1 177,434 - GFF3412 0.55 -0.8 177,573 - GFF3412 0.65 +1.3 177,575 - GFF3412 0.65 -0.5 177,611 + GFF3412 0.68 -0.0 177,645 + GFF3412 0.71 +0.1 177,657 + GFF3412 0.72 -1.6 177,728 - GFF3412 0.77 -2.9 177,846 + GFF3412 0.86 -2.4 177,977 + -0.6 177,997 + +2.0 178,181 - -1.9 178,181 - -0.7 178,289 + GFF3413 0.19 -0.4 178,441 + GFF3413 0.33 -0.4 178,441 + GFF3413 0.33 +0.3 178,442 - GFF3413 0.33 -1.3 178,454 - GFF3413 0.34 -0.2 178,515 + GFF3413 0.39 +0.0 178,518 + GFF3413 0.39 -0.2 178,519 - GFF3413 0.39 -0.4 178,519 - GFF3413 0.39 -1.0 178,523 - GFF3413 0.40 +0.2 178,523 - GFF3413 0.40 -0.5 178,629 + GFF3413 0.49 +0.3 178,799 - GFF3413 0.64 +0.2 178,802 - GFF3413 0.65 +1.4 178,877 - GFF3413 0.71 +1.0
Or see this region's nucleotide sequence