Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF2575

Experiment: LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2574 and GFF2575 are separated by 512 nucleotidesGFF2575 and GFF2576 are separated by 76 nucleotidesGFF2576 and GFF2577 are separated by 177 nucleotides GFF2574 - FIG074102: hypothetical protein, at 95,122 to 95,754 GFF2574 GFF2575 - L-asparagine permease, at 96,267 to 97,760 GFF2575 GFF2576 - Putative outer membrane lipoprotein, at 97,837 to 98,025 GFF2576 GFF2577 - FIG00638561: hypothetical protein, at 98,203 to 99,264 GFF2577 Position (kb) 96 97 98Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 95.310 kb on - strand, within GFF2574at 95.391 kb on + strand, within GFF2574at 95.392 kb on - strand, within GFF2574at 95.459 kb on - strand, within GFF2574at 95.488 kb on + strand, within GFF2574at 95.488 kb on + strand, within GFF2574at 95.494 kb on - strand, within GFF2574at 95.585 kb on + strand, within GFF2574at 95.597 kb on - strand, within GFF2574at 95.678 kb on + strand, within GFF2574at 95.745 kb on + strandat 95.746 kb on - strandat 95.746 kb on - strandat 95.746 kb on - strandat 95.746 kb on - strandat 95.754 kb on + strandat 95.787 kb on + strandat 95.787 kb on + strandat 95.787 kb on + strandat 95.787 kb on + strandat 95.787 kb on + strandat 95.788 kb on - strandat 95.789 kb on + strandat 95.790 kb on - strandat 95.790 kb on - strandat 95.939 kb on - strandat 95.939 kb on - strandat 95.942 kb on + strandat 95.943 kb on - strandat 95.951 kb on - strandat 95.982 kb on - strandat 96.129 kb on - strandat 96.251 kb on + strandat 96.251 kb on + strandat 96.252 kb on - strandat 96.588 kb on + strand, within GFF2575at 96.588 kb on + strand, within GFF2575at 96.611 kb on + strand, within GFF2575at 96.612 kb on - strand, within GFF2575at 96.660 kb on + strand, within GFF2575at 96.660 kb on + strand, within GFF2575at 96.660 kb on + strand, within GFF2575at 96.660 kb on + strand, within GFF2575at 96.661 kb on - strand, within GFF2575at 96.661 kb on - strand, within GFF2575at 96.896 kb on + strand, within GFF2575at 97.069 kb on - strand, within GFF2575at 97.170 kb on + strand, within GFF2575at 97.172 kb on + strand, within GFF2575at 97.185 kb on - strand, within GFF2575at 97.191 kb on - strand, within GFF2575at 97.323 kb on + strand, within GFF2575at 97.353 kb on + strand, within GFF2575at 97.354 kb on - strand, within GFF2575at 97.377 kb on + strand, within GFF2575at 97.452 kb on - strand, within GFF2575at 97.518 kb on - strand, within GFF2575at 97.538 kb on + strand, within GFF2575at 97.538 kb on + strand, within GFF2575at 97.564 kb on + strand, within GFF2575at 97.564 kb on + strand, within GFF2575at 97.611 kb on + strandat 97.611 kb on + strandat 97.614 kb on - strandat 97.614 kb on - strandat 97.641 kb on - strandat 97.798 kb on + strandat 97.849 kb on - strandat 97.906 kb on - strand, within GFF2576at 97.907 kb on + strand, within GFF2576at 97.907 kb on + strand, within GFF2576at 98.141 kb on + strandat 98.344 kb on - strand, within GFF2577at 98.355 kb on - strand, within GFF2577at 98.355 kb on - strand, within GFF2577at 98.406 kb on - strand, within GFF2577at 98.416 kb on - strand, within GFF2577at 98.565 kb on + strand, within GFF2577at 98.565 kb on + strand, within GFF2577at 98.602 kb on - strand, within GFF2577

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
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95,310 - GFF2574 0.30 +0.1
95,391 + GFF2574 0.42 +0.1
95,392 - GFF2574 0.43 -0.3
95,459 - GFF2574 0.53 +1.5
95,488 + GFF2574 0.58 +0.9
95,488 + GFF2574 0.58 -0.6
95,494 - GFF2574 0.59 -0.4
95,585 + GFF2574 0.73 -0.5
95,597 - GFF2574 0.75 +0.4
95,678 + GFF2574 0.88 -1.5
95,745 + +2.1
95,746 - +0.5
95,746 - -0.6
95,746 - -0.2
95,746 - -0.0
95,754 + -1.8
95,787 + +0.1
95,787 + +0.2
95,787 + -1.3
95,787 + -1.2
95,787 + +0.3
95,788 - -0.8
95,789 + -0.7
95,790 - +0.1
95,790 - +1.7
95,939 - -0.2
95,939 - +0.1
95,942 + -0.1
95,943 - -3.4
95,951 - +0.5
95,982 - -0.3
96,129 - +0.7
96,251 + -0.3
96,251 + +0.9
96,252 - -0.1
96,588 + GFF2575 0.21 -0.3
96,588 + GFF2575 0.21 -0.3
96,611 + GFF2575 0.23 -0.5
96,612 - GFF2575 0.23 -0.5
96,660 + GFF2575 0.26 -0.7
96,660 + GFF2575 0.26 -0.6
96,660 + GFF2575 0.26 -1.2
96,660 + GFF2575 0.26 -0.2
96,661 - GFF2575 0.26 -0.3
96,661 - GFF2575 0.26 -0.0
96,896 + GFF2575 0.42 -0.9
97,069 - GFF2575 0.54 +0.2
97,170 + GFF2575 0.60 -0.0
97,172 + GFF2575 0.61 -0.4
97,185 - GFF2575 0.61 -0.1
97,191 - GFF2575 0.62 -2.1
97,323 + GFF2575 0.71 +0.5
97,353 + GFF2575 0.73 -0.0
97,354 - GFF2575 0.73 +0.6
97,377 + GFF2575 0.74 -0.9
97,452 - GFF2575 0.79 -0.5
97,518 - GFF2575 0.84 +0.0
97,538 + GFF2575 0.85 -0.2
97,538 + GFF2575 0.85 +0.4
97,564 + GFF2575 0.87 -0.3
97,564 + GFF2575 0.87 +0.2
97,611 + -0.5
97,611 + -0.3
97,614 - +0.5
97,614 - +0.2
97,641 - +0.7
97,798 + -1.2
97,849 - -0.9
97,906 - GFF2576 0.37 +0.7
97,907 + GFF2576 0.37 +0.9
97,907 + GFF2576 0.37 -0.7
98,141 + -0.6
98,344 - GFF2577 0.13 +0.0
98,355 - GFF2577 0.14 -0.4
98,355 - GFF2577 0.14 -0.2
98,406 - GFF2577 0.19 +0.2
98,416 - GFF2577 0.20 -0.7
98,565 + GFF2577 0.34 -0.0
98,565 + GFF2577 0.34 -1.2
98,602 - GFF2577 0.38 +0.0

Or see this region's nucleotide sequence