Experiment: LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1510 and GFF1511 are separated by 216 nucleotides GFF1511 and GFF1512 overlap by 7 nucleotides GFF1512 and GFF1513 overlap by 14 nucleotides GFF1513 and GFF1514 overlap by 8 nucleotides GFF1514 and GFF1515 overlap by 21 nucleotides
GFF1510 - FIG139552: Putative protease, at 17,290 to 18,285
GFF1510
GFF1511 - FIG138517: Putative lipid carrier protein, at 18,502 to 19,026
GFF1511
GFF1512 - FIG002208: Acetyltransferase (EC 2.3.1.-), at 19,020 to 19,523
GFF1512
GFF1513 - FIG137864: putative endonuclease containing a URI domain, at 19,510 to 19,872
GFF1513
GFF1514 - FIG01219785: hypothetical protein, at 19,865 to 20,308
GFF1514
GFF1515 - General stress protein 18, at 20,288 to 20,806
GFF1515
Position (kb) 19
20 Strain fitness (log2 ratio) -2
-1
0
1
2 at 18.344 kb on + strand at 18.344 kb on + strand at 18.387 kb on + strand at 18.527 kb on + strand at 18.527 kb on + strand at 18.880 kb on + strand, within GFF1511 at 18.880 kb on + strand, within GFF1511 at 18.881 kb on - strand, within GFF1511 at 19.024 kb on + strand at 19.024 kb on + strand at 19.058 kb on + strand at 19.225 kb on + strand, within GFF1512 at 19.295 kb on - strand, within GFF1512 at 19.295 kb on - strand, within GFF1512 at 19.295 kb on - strand, within GFF1512 at 19.299 kb on + strand, within GFF1512 at 19.299 kb on + strand, within GFF1512 at 19.366 kb on + strand, within GFF1512 at 19.368 kb on + strand, within GFF1512 at 19.369 kb on - strand, within GFF1512 at 19.369 kb on - strand, within GFF1512 at 19.370 kb on + strand, within GFF1512 at 19.522 kb on - strand at 19.620 kb on - strand, within GFF1513 at 19.624 kb on + strand, within GFF1513 at 19.782 kb on + strand, within GFF1513 at 19.799 kb on + strand, within GFF1513 at 19.800 kb on - strand, within GFF1513 at 19.861 kb on - strand at 19.861 kb on - strand at 19.876 kb on + strand at 19.876 kb on + strand at 19.876 kb on + strand at 19.926 kb on + strand, within GFF1514 at 19.926 kb on + strand, within GFF1514 at 19.927 kb on - strand, within GFF1514 at 19.994 kb on + strand, within GFF1514
Per-strain Table
Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI remove 18,344 + -0.9 18,344 + -0.3 18,387 + -0.4 18,527 + -0.1 18,527 + -0.2 18,880 + GFF1511 0.72 -0.2 18,880 + GFF1511 0.72 -0.2 18,881 - GFF1511 0.72 -0.0 19,024 + -1.3 19,024 + -1.2 19,058 + -1.0 19,225 + GFF1512 0.41 -1.4 19,295 - GFF1512 0.55 +0.5 19,295 - GFF1512 0.55 +1.0 19,295 - GFF1512 0.55 +1.2 19,299 + GFF1512 0.55 -1.5 19,299 + GFF1512 0.55 -0.4 19,366 + GFF1512 0.69 -0.5 19,368 + GFF1512 0.69 -0.2 19,369 - GFF1512 0.69 -1.8 19,369 - GFF1512 0.69 +0.1 19,370 + GFF1512 0.69 +0.0 19,522 - +0.2 19,620 - GFF1513 0.30 -0.1 19,624 + GFF1513 0.31 -1.4 19,782 + GFF1513 0.75 -0.2 19,799 + GFF1513 0.80 +0.1 19,800 - GFF1513 0.80 -0.8 19,861 - +0.0 19,861 - -0.8 19,876 + -0.5 19,876 + +0.2 19,876 + -0.8 19,926 + GFF1514 0.14 -0.3 19,926 + GFF1514 0.14 +2.0 19,927 - GFF1514 0.14 -0.2 19,994 + GFF1514 0.29 +0.2
Or see this region's nucleotide sequence