Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF1181

Experiment: LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1178 and GFF1179 are separated by 113 nucleotidesGFF1179 and GFF1180 overlap by 14 nucleotidesGFF1180 and GFF1181 overlap by 11 nucleotidesGFF1181 and GFF1182 overlap by 4 nucleotides GFF1178 - hypothetical protein, at 23,689 to 23,820 GFF1178 GFF1179 - IncF plasmid conjugative transfer protein TraQ, at 23,934 to 24,227 GFF1179 GFF1180 - IncF plasmid conjugative transfer protein TrbB, at 24,214 to 24,762 GFF1180 GFF1181 - IncF plasmid conjugative transfer pilus assembly protein TraH, at 24,752 to 26,134 GFF1181 GFF1182 - IncF plasmid conjugative transfer protein TraG, at 26,131 to 28,953 GFF1182 Position (kb) 24 25 26 27Strain fitness (log2 ratio) -2 -1 0 1 2at 23.905 kb on - strandat 23.907 kb on - strandat 24.226 kb on - strandat 24.303 kb on + strand, within GFF1180at 24.489 kb on - strand, within GFF1180at 24.512 kb on - strand, within GFF1180at 24.534 kb on + strand, within GFF1180at 24.671 kb on + strand, within GFF1180at 24.672 kb on - strand, within GFF1180at 24.739 kb on + strandat 24.740 kb on - strandat 24.740 kb on - strandat 24.740 kb on - strandat 24.740 kb on - strandat 24.740 kb on - strandat 24.760 kb on + strandat 24.772 kb on + strandat 24.772 kb on + strandat 24.786 kb on + strandat 24.787 kb on - strandat 24.789 kb on + strandat 24.862 kb on + strandat 24.924 kb on - strand, within GFF1181at 24.942 kb on + strand, within GFF1181at 24.943 kb on - strand, within GFF1181at 24.943 kb on - strand, within GFF1181at 24.943 kb on - strand, within GFF1181at 24.943 kb on - strand, within GFF1181at 24.943 kb on - strand, within GFF1181at 24.945 kb on - strand, within GFF1181at 25.029 kb on - strand, within GFF1181at 25.029 kb on - strand, within GFF1181at 25.087 kb on + strand, within GFF1181at 25.088 kb on - strand, within GFF1181at 25.093 kb on + strand, within GFF1181at 25.189 kb on + strand, within GFF1181at 25.195 kb on + strand, within GFF1181at 25.195 kb on + strand, within GFF1181at 25.339 kb on + strand, within GFF1181at 25.339 kb on + strand, within GFF1181at 25.339 kb on + strand, within GFF1181at 25.339 kb on + strand, within GFF1181at 25.340 kb on - strand, within GFF1181at 25.565 kb on - strand, within GFF1181at 25.600 kb on - strand, within GFF1181at 25.600 kb on - strand, within GFF1181at 25.601 kb on + strand, within GFF1181at 25.601 kb on + strand, within GFF1181at 25.602 kb on - strand, within GFF1181at 25.602 kb on - strand, within GFF1181at 25.621 kb on + strand, within GFF1181at 25.747 kb on + strand, within GFF1181at 25.762 kb on + strand, within GFF1181at 25.763 kb on - strand, within GFF1181at 25.839 kb on - strand, within GFF1181at 25.853 kb on + strand, within GFF1181at 25.853 kb on + strand, within GFF1181at 25.854 kb on - strand, within GFF1181at 25.880 kb on + strand, within GFF1181at 25.881 kb on - strand, within GFF1181at 25.881 kb on - strand, within GFF1181at 25.931 kb on + strand, within GFF1181at 25.931 kb on + strand, within GFF1181at 25.932 kb on - strand, within GFF1181at 25.932 kb on - strand, within GFF1181at 25.954 kb on + strand, within GFF1181at 25.954 kb on + strand, within GFF1181at 25.955 kb on - strand, within GFF1181at 26.058 kb on - strandat 26.058 kb on - strandat 26.143 kb on + strandat 26.144 kb on - strandat 26.144 kb on - strandat 26.173 kb on - strandat 26.173 kb on - strandat 26.268 kb on + strandat 26.269 kb on - strandat 26.286 kb on + strandat 26.287 kb on - strandat 26.287 kb on - strandat 26.331 kb on - strandat 26.360 kb on + strandat 26.360 kb on + strandat 26.361 kb on - strandat 26.367 kb on - strandat 26.367 kb on - strandat 26.406 kb on + strandat 26.476 kb on + strand, within GFF1182at 26.477 kb on - strand, within GFF1182at 26.477 kb on - strand, within GFF1182at 26.477 kb on - strand, within GFF1182at 26.512 kb on + strand, within GFF1182at 26.513 kb on - strand, within GFF1182at 26.526 kb on + strand, within GFF1182at 26.527 kb on - strand, within GFF1182at 26.609 kb on - strand, within GFF1182at 26.634 kb on + strand, within GFF1182at 26.635 kb on - strand, within GFF1182at 26.635 kb on - strand, within GFF1182at 26.635 kb on - strand, within GFF1182at 26.654 kb on - strand, within GFF1182at 26.692 kb on - strand, within GFF1182at 26.731 kb on + strand, within GFF1182at 26.731 kb on + strand, within GFF1182at 26.803 kb on - strand, within GFF1182at 26.830 kb on + strand, within GFF1182at 26.831 kb on - strand, within GFF1182at 26.909 kb on - strand, within GFF1182at 26.950 kb on - strand, within GFF1182at 26.950 kb on - strand, within GFF1182at 26.991 kb on + strand, within GFF1182at 27.120 kb on + strand, within GFF1182at 27.120 kb on + strand, within GFF1182

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with FelixO1_phage (LP_new) 15 MOI
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23,905 - -0.1
23,907 - -0.3
24,226 - +0.0
24,303 + GFF1180 0.16 -0.4
24,489 - GFF1180 0.50 +1.8
24,512 - GFF1180 0.54 +0.0
24,534 + GFF1180 0.58 +2.2
24,671 + GFF1180 0.83 +0.5
24,672 - GFF1180 0.83 -0.2
24,739 + -0.7
24,740 - -0.5
24,740 - +1.5
24,740 - -0.1
24,740 - +0.0
24,740 - -0.9
24,760 + +0.1
24,772 + +2.0
24,772 + -2.2
24,786 + +0.1
24,787 - +1.4
24,789 + +0.0
24,862 + +1.1
24,924 - GFF1181 0.12 -1.4
24,942 + GFF1181 0.14 -0.4
24,943 - GFF1181 0.14 +0.1
24,943 - GFF1181 0.14 -1.3
24,943 - GFF1181 0.14 -0.3
24,943 - GFF1181 0.14 +0.0
24,943 - GFF1181 0.14 -0.4
24,945 - GFF1181 0.14 -0.5
25,029 - GFF1181 0.20 -0.2
25,029 - GFF1181 0.20 -0.5
25,087 + GFF1181 0.24 -0.3
25,088 - GFF1181 0.24 +2.0
25,093 + GFF1181 0.25 -0.7
25,189 + GFF1181 0.32 -0.0
25,195 + GFF1181 0.32 -0.5
25,195 + GFF1181 0.32 -0.7
25,339 + GFF1181 0.42 -0.6
25,339 + GFF1181 0.42 +0.1
25,339 + GFF1181 0.42 -0.1
25,339 + GFF1181 0.42 -0.2
25,340 - GFF1181 0.43 +0.0
25,565 - GFF1181 0.59 +1.6
25,600 - GFF1181 0.61 +0.2
25,600 - GFF1181 0.61 +0.6
25,601 + GFF1181 0.61 +0.8
25,601 + GFF1181 0.61 -0.7
25,602 - GFF1181 0.61 -0.3
25,602 - GFF1181 0.61 -0.8
25,621 + GFF1181 0.63 -2.6
25,747 + GFF1181 0.72 -0.1
25,762 + GFF1181 0.73 -0.9
25,763 - GFF1181 0.73 +0.6
25,839 - GFF1181 0.79 -0.9
25,853 + GFF1181 0.80 +0.4
25,853 + GFF1181 0.80 +0.4
25,854 - GFF1181 0.80 -0.2
25,880 + GFF1181 0.82 -0.7
25,881 - GFF1181 0.82 -0.4
25,881 - GFF1181 0.82 -2.4
25,931 + GFF1181 0.85 -0.5
25,931 + GFF1181 0.85 -1.2
25,932 - GFF1181 0.85 +1.8
25,932 - GFF1181 0.85 -1.4
25,954 + GFF1181 0.87 -0.1
25,954 + GFF1181 0.87 -0.4
25,955 - GFF1181 0.87 +2.6
26,058 - +0.9
26,058 - -0.4
26,143 + +0.2
26,144 - -1.5
26,144 - -1.0
26,173 - -0.8
26,173 - -0.2
26,268 + -0.2
26,269 - -1.0
26,286 + +0.7
26,287 - -0.5
26,287 - -0.5
26,331 - +0.5
26,360 + -0.1
26,360 + -0.3
26,361 - -0.1
26,367 - +1.3
26,367 - -0.4
26,406 + +0.1
26,476 + GFF1182 0.12 +0.2
26,477 - GFF1182 0.12 +1.3
26,477 - GFF1182 0.12 -0.2
26,477 - GFF1182 0.12 -1.1
26,512 + GFF1182 0.13 -0.0
26,513 - GFF1182 0.14 -1.9
26,526 + GFF1182 0.14 -0.0
26,527 - GFF1182 0.14 -0.8
26,609 - GFF1182 0.17 -1.5
26,634 + GFF1182 0.18 +0.0
26,635 - GFF1182 0.18 -0.7
26,635 - GFF1182 0.18 +0.2
26,635 - GFF1182 0.18 -0.1
26,654 - GFF1182 0.19 -0.4
26,692 - GFF1182 0.20 -0.2
26,731 + GFF1182 0.21 +1.0
26,731 + GFF1182 0.21 +0.1
26,803 - GFF1182 0.24 -0.1
26,830 + GFF1182 0.25 -0.2
26,831 - GFF1182 0.25 -0.4
26,909 - GFF1182 0.28 -0.0
26,950 - GFF1182 0.29 +0.1
26,950 - GFF1182 0.29 -0.3
26,991 + GFF1182 0.30 +1.5
27,120 + GFF1182 0.35 -0.0
27,120 + GFF1182 0.35 -0.4

Or see this region's nucleotide sequence