Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4450 and Echvi_4451 are separated by 425 nucleotides Echvi_4451 and Echvi_4452 are separated by 188 nucleotides Echvi_4452 and Echvi_4453 are separated by 53 nucleotides Echvi_4453 and Echvi_4454 are separated by 424 nucleotides
Echvi_4450: Echvi_4450 - TonB-linked outer membrane protein, SusC/RagA family, at 5,324,132 to 5,327,344
_4450
Echvi_4451: Echvi_4451 - hypothetical protein, at 5,327,770 to 5,327,859
_4451
Echvi_4452: Echvi_4452 - SusD family., at 5,328,048 to 5,329,406
_4452
Echvi_4453: Echvi_4453 - hypothetical protein, at 5,329,460 to 5,329,729
_4453
Echvi_4454: Echvi_4454 - hypothetical protein, at 5,330,154 to 5,330,609
_4454
Position (kb) 5328
5329
5330 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5327.140 kb on + strand at 5327.141 kb on - strand at 5327.141 kb on - strand at 5327.141 kb on - strand at 5327.141 kb on - strand at 5327.143 kb on + strand at 5327.143 kb on + strand at 5327.144 kb on - strand at 5327.144 kb on - strand at 5327.144 kb on - strand at 5327.144 kb on - strand at 5327.148 kb on + strand at 5327.170 kb on + strand at 5327.170 kb on + strand at 5327.171 kb on - strand at 5327.171 kb on - strand at 5327.171 kb on - strand at 5327.171 kb on - strand at 5327.199 kb on + strand at 5327.199 kb on + strand at 5327.220 kb on + strand at 5327.220 kb on + strand at 5327.221 kb on - strand at 5327.221 kb on - strand at 5327.222 kb on + strand at 5327.222 kb on + strand at 5327.228 kb on + strand at 5327.309 kb on - strand at 5327.322 kb on + strand at 5327.350 kb on + strand at 5327.357 kb on - strand at 5327.357 kb on - strand at 5327.357 kb on - strand at 5327.358 kb on + strand at 5327.359 kb on - strand at 5327.378 kb on + strand at 5327.379 kb on - strand at 5327.379 kb on - strand at 5327.379 kb on - strand at 5327.439 kb on - strand at 5327.461 kb on - strand at 5327.461 kb on - strand at 5327.461 kb on - strand at 5327.464 kb on - strand at 5327.677 kb on + strand at 5327.677 kb on + strand at 5327.678 kb on - strand at 5327.680 kb on + strand at 5327.680 kb on + strand at 5327.680 kb on + strand at 5327.680 kb on + strand at 5327.680 kb on + strand at 5327.680 kb on + strand at 5327.680 kb on + strand at 5327.680 kb on + strand at 5327.680 kb on + strand at 5327.681 kb on - strand at 5327.681 kb on - strand at 5327.698 kb on + strand at 5327.734 kb on + strand at 5327.735 kb on - strand at 5327.744 kb on + strand at 5327.744 kb on + strand at 5327.744 kb on + strand at 5327.744 kb on + strand at 5327.744 kb on + strand at 5327.744 kb on + strand at 5327.744 kb on + strand at 5327.744 kb on + strand at 5327.745 kb on - strand at 5327.754 kb on + strand at 5327.835 kb on + strand, within Echvi_4451 at 5327.892 kb on + strand at 5327.925 kb on + strand at 5327.936 kb on + strand at 5327.936 kb on + strand at 5327.937 kb on - strand at 5327.937 kb on - strand at 5327.937 kb on - strand at 5327.954 kb on + strand at 5327.954 kb on + strand at 5328.009 kb on - strand at 5328.022 kb on + strand at 5328.025 kb on + strand at 5328.025 kb on + strand at 5328.025 kb on + strand at 5328.025 kb on + strand at 5328.034 kb on + strand at 5328.058 kb on + strand at 5328.058 kb on + strand at 5328.062 kb on + strand at 5328.080 kb on + strand at 5328.093 kb on - strand at 5328.103 kb on + strand at 5328.177 kb on - strand at 5328.178 kb on + strand at 5328.178 kb on + strand at 5328.179 kb on - strand at 5328.179 kb on - strand at 5328.179 kb on - strand at 5328.179 kb on - strand at 5328.202 kb on - strand, within Echvi_4452 at 5328.203 kb on + strand, within Echvi_4452 at 5328.204 kb on - strand, within Echvi_4452 at 5328.204 kb on - strand, within Echvi_4452 at 5328.320 kb on + strand, within Echvi_4452 at 5328.320 kb on + strand, within Echvi_4452 at 5328.321 kb on - strand, within Echvi_4452 at 5328.321 kb on - strand, within Echvi_4452 at 5328.486 kb on + strand, within Echvi_4452 at 5328.572 kb on + strand, within Echvi_4452 at 5328.573 kb on - strand, within Echvi_4452 at 5328.602 kb on + strand, within Echvi_4452 at 5328.603 kb on - strand, within Echvi_4452 at 5328.606 kb on + strand, within Echvi_4452 at 5328.607 kb on - strand, within Echvi_4452 at 5328.607 kb on - strand, within Echvi_4452 at 5328.607 kb on - strand, within Echvi_4452 at 5328.697 kb on - strand, within Echvi_4452 at 5328.704 kb on - strand, within Echvi_4452 at 5328.725 kb on + strand, within Echvi_4452 at 5328.736 kb on - strand, within Echvi_4452 at 5328.750 kb on - strand, within Echvi_4452 at 5328.819 kb on - strand, within Echvi_4452 at 5328.819 kb on - strand, within Echvi_4452 at 5328.819 kb on - strand, within Echvi_4452 at 5328.839 kb on + strand, within Echvi_4452 at 5328.855 kb on + strand, within Echvi_4452 at 5328.930 kb on + strand, within Echvi_4452 at 5328.930 kb on + strand, within Echvi_4452 at 5328.947 kb on - strand, within Echvi_4452 at 5328.975 kb on - strand, within Echvi_4452 at 5328.975 kb on - strand, within Echvi_4452 at 5329.008 kb on + strand, within Echvi_4452 at 5329.008 kb on + strand, within Echvi_4452 at 5329.008 kb on + strand, within Echvi_4452 at 5329.009 kb on - strand, within Echvi_4452 at 5329.023 kb on + strand, within Echvi_4452 at 5329.024 kb on - strand, within Echvi_4452 at 5329.081 kb on + strand, within Echvi_4452 at 5329.082 kb on - strand, within Echvi_4452 at 5329.123 kb on - strand, within Echvi_4452 at 5329.126 kb on + strand, within Echvi_4452 at 5329.126 kb on + strand, within Echvi_4452 at 5329.127 kb on - strand, within Echvi_4452 at 5329.127 kb on - strand, within Echvi_4452 at 5329.127 kb on - strand, within Echvi_4452 at 5329.148 kb on - strand, within Echvi_4452 at 5329.166 kb on - strand, within Echvi_4452 at 5329.289 kb on - strand at 5329.324 kb on + strand at 5329.345 kb on - strand at 5329.345 kb on - strand at 5329.345 kb on - strand at 5329.358 kb on - strand at 5329.439 kb on + strand at 5329.568 kb on + strand, within Echvi_4453 at 5329.609 kb on + strand, within Echvi_4453 at 5329.712 kb on - strand at 5329.784 kb on - strand at 5329.799 kb on + strand at 5329.800 kb on - strand at 5329.812 kb on + strand at 5329.849 kb on + strand at 5329.850 kb on - strand at 5329.850 kb on - strand at 5329.859 kb on - strand at 5329.863 kb on + strand at 5329.864 kb on - strand at 5329.864 kb on - strand at 5329.897 kb on - strand at 5329.921 kb on + strand at 5329.921 kb on + strand at 5329.926 kb on + strand at 5329.926 kb on + strand at 5329.926 kb on + strand at 5329.927 kb on - strand at 5329.927 kb on - strand at 5329.946 kb on - strand at 5329.946 kb on - strand at 5329.946 kb on - strand at 5329.969 kb on - strand at 5329.969 kb on - strand at 5330.022 kb on - strand at 5330.022 kb on - strand at 5330.022 kb on - strand at 5330.022 kb on - strand at 5330.070 kb on - strand at 5330.084 kb on + strand at 5330.090 kb on + strand at 5330.090 kb on + strand at 5330.093 kb on + strand at 5330.098 kb on + strand at 5330.103 kb on + strand at 5330.103 kb on + strand at 5330.103 kb on + strand at 5330.103 kb on + strand at 5330.103 kb on + strand at 5330.103 kb on + strand at 5330.112 kb on + strand at 5330.112 kb on + strand at 5330.204 kb on + strand, within Echvi_4454 at 5330.223 kb on + strand, within Echvi_4454 at 5330.307 kb on + strand, within Echvi_4454 at 5330.307 kb on + strand, within Echvi_4454 at 5330.308 kb on - strand, within Echvi_4454 at 5330.308 kb on - strand, within Echvi_4454 at 5330.308 kb on - strand, within Echvi_4454 at 5330.308 kb on - strand, within Echvi_4454 at 5330.309 kb on + strand, within Echvi_4454 at 5330.309 kb on + strand, within Echvi_4454 at 5330.309 kb on + strand, within Echvi_4454 at 5330.309 kb on + strand, within Echvi_4454 at 5330.309 kb on + strand, within Echvi_4454 at 5330.309 kb on + strand, within Echvi_4454 at 5330.310 kb on - strand, within Echvi_4454 at 5330.310 kb on - strand, within Echvi_4454 at 5330.311 kb on + strand, within Echvi_4454 at 5330.311 kb on + strand, within Echvi_4454 at 5330.311 kb on + strand, within Echvi_4454 at 5330.311 kb on + strand, within Echvi_4454 at 5330.311 kb on + strand, within Echvi_4454 at 5330.311 kb on + strand, within Echvi_4454 at 5330.311 kb on + strand, within Echvi_4454 at 5330.312 kb on - strand, within Echvi_4454 at 5330.312 kb on - strand, within Echvi_4454 at 5330.337 kb on + strand, within Echvi_4454 at 5330.395 kb on - strand, within Echvi_4454
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 5,327,140 + +0.9 5,327,141 - +0.8 5,327,141 - +0.4 5,327,141 - -0.1 5,327,141 - -0.3 5,327,143 + +0.2 5,327,143 + -0.4 5,327,144 - -1.5 5,327,144 - +0.9 5,327,144 - +0.3 5,327,144 - +0.8 5,327,148 + +1.8 5,327,170 + -1.9 5,327,170 + -0.5 5,327,171 - -0.2 5,327,171 - -0.6 5,327,171 - +0.5 5,327,171 - +1.0 5,327,199 + +0.4 5,327,199 + -0.2 5,327,220 + +0.8 5,327,220 + +0.3 5,327,221 - -1.3 5,327,221 - -1.0 5,327,222 + -0.7 5,327,222 + -0.6 5,327,228 + +1.1 5,327,309 - -0.3 5,327,322 + -0.2 5,327,350 + -0.7 5,327,357 - +0.9 5,327,357 - -0.5 5,327,357 - -1.0 5,327,358 + -3.7 5,327,359 - +0.8 5,327,378 + -1.3 5,327,379 - +1.4 5,327,379 - +0.9 5,327,379 - -0.8 5,327,439 - -0.7 5,327,461 - +0.4 5,327,461 - +1.3 5,327,461 - +0.3 5,327,464 - -0.1 5,327,677 + +0.1 5,327,677 + -1.1 5,327,678 - +0.8 5,327,680 + +1.6 5,327,680 + +1.0 5,327,680 + +1.6 5,327,680 + -0.7 5,327,680 + +0.9 5,327,680 + +0.8 5,327,680 + +1.3 5,327,680 + +0.2 5,327,680 + +0.1 5,327,681 - +1.0 5,327,681 - -1.9 5,327,698 + +2.8 5,327,734 + +1.3 5,327,735 - -2.4 5,327,744 + +0.3 5,327,744 + -0.5 5,327,744 + -0.4 5,327,744 + -1.2 5,327,744 + +0.6 5,327,744 + -0.3 5,327,744 + +0.6 5,327,744 + +0.6 5,327,745 - +0.4 5,327,754 + -0.1 5,327,835 + Echvi_4451 0.72 +0.6 5,327,892 + -1.3 5,327,925 + +0.6 5,327,936 + -0.2 5,327,936 + +0.7 5,327,937 - +0.3 5,327,937 - -0.1 5,327,937 - +0.3 5,327,954 + -0.0 5,327,954 + +0.4 5,328,009 - -0.6 5,328,022 + -1.5 5,328,025 + -1.0 5,328,025 + +2.8 5,328,025 + -2.0 5,328,025 + -1.1 5,328,034 + -1.4 5,328,058 + -0.2 5,328,058 + -2.6 5,328,062 + -0.0 5,328,080 + +0.2 5,328,093 - -0.1 5,328,103 + +0.3 5,328,177 - -1.2 5,328,178 + +0.6 5,328,178 + -0.7 5,328,179 - -2.2 5,328,179 - -1.0 5,328,179 - -1.7 5,328,179 - +0.9 5,328,202 - Echvi_4452 0.11 -1.4 5,328,203 + Echvi_4452 0.11 +0.3 5,328,204 - Echvi_4452 0.11 -0.2 5,328,204 - Echvi_4452 0.11 -0.8 5,328,320 + Echvi_4452 0.20 -0.9 5,328,320 + Echvi_4452 0.20 -1.5 5,328,321 - Echvi_4452 0.20 -2.0 5,328,321 - Echvi_4452 0.20 +0.5 5,328,486 + Echvi_4452 0.32 -2.6 5,328,572 + Echvi_4452 0.39 +0.2 5,328,573 - Echvi_4452 0.39 -0.4 5,328,602 + Echvi_4452 0.41 -0.4 5,328,603 - Echvi_4452 0.41 -1.0 5,328,606 + Echvi_4452 0.41 -0.4 5,328,607 - Echvi_4452 0.41 -0.2 5,328,607 - Echvi_4452 0.41 -0.4 5,328,607 - Echvi_4452 0.41 +0.7 5,328,697 - Echvi_4452 0.48 +0.7 5,328,704 - Echvi_4452 0.48 +1.6 5,328,725 + Echvi_4452 0.50 -1.4 5,328,736 - Echvi_4452 0.51 +0.8 5,328,750 - Echvi_4452 0.52 +0.1 5,328,819 - Echvi_4452 0.57 -0.2 5,328,819 - Echvi_4452 0.57 -0.4 5,328,819 - Echvi_4452 0.57 +1.3 5,328,839 + Echvi_4452 0.58 -0.7 5,328,855 + Echvi_4452 0.59 -2.8 5,328,930 + Echvi_4452 0.65 +0.6 5,328,930 + Echvi_4452 0.65 +0.2 5,328,947 - Echvi_4452 0.66 -0.7 5,328,975 - Echvi_4452 0.68 -2.3 5,328,975 - Echvi_4452 0.68 -1.4 5,329,008 + Echvi_4452 0.71 +0.3 5,329,008 + Echvi_4452 0.71 +1.8 5,329,008 + Echvi_4452 0.71 -1.2 5,329,009 - Echvi_4452 0.71 -3.7 5,329,023 + Echvi_4452 0.72 -1.0 5,329,024 - Echvi_4452 0.72 +0.6 5,329,081 + Echvi_4452 0.76 -0.4 5,329,082 - Echvi_4452 0.76 -0.4 5,329,123 - Echvi_4452 0.79 -0.9 5,329,126 + Echvi_4452 0.79 -0.1 5,329,126 + Echvi_4452 0.79 -1.8 5,329,127 - Echvi_4452 0.79 +0.8 5,329,127 - Echvi_4452 0.79 -0.4 5,329,127 - Echvi_4452 0.79 +0.2 5,329,148 - Echvi_4452 0.81 +0.0 5,329,166 - Echvi_4452 0.82 +1.6 5,329,289 - -0.5 5,329,324 + -2.7 5,329,345 - -1.5 5,329,345 - -0.2 5,329,345 - -1.0 5,329,358 - +0.7 5,329,439 + -0.5 5,329,568 + Echvi_4453 0.40 -0.1 5,329,609 + Echvi_4453 0.55 -2.2 5,329,712 - -2.0 5,329,784 - +0.4 5,329,799 + -1.0 5,329,800 - -0.6 5,329,812 + -0.0 5,329,849 + -0.3 5,329,850 - -0.6 5,329,850 - +0.5 5,329,859 - +0.5 5,329,863 + +1.0 5,329,864 - +0.3 5,329,864 - -0.1 5,329,897 - -1.2 5,329,921 + +1.6 5,329,921 + +0.2 5,329,926 + +1.4 5,329,926 + +0.6 5,329,926 + -1.6 5,329,927 - -1.3 5,329,927 - +1.2 5,329,946 - +1.0 5,329,946 - -0.1 5,329,946 - -0.0 5,329,969 - -1.6 5,329,969 - +0.0 5,330,022 - -0.9 5,330,022 - -1.2 5,330,022 - +0.4 5,330,022 - +0.6 5,330,070 - +0.8 5,330,084 + +0.4 5,330,090 + +0.9 5,330,090 + -1.3 5,330,093 + -0.3 5,330,098 + -0.1 5,330,103 + +0.8 5,330,103 + +0.3 5,330,103 + -0.6 5,330,103 + -0.0 5,330,103 + +0.7 5,330,103 + +1.8 5,330,112 + -0.3 5,330,112 + +0.3 5,330,204 + Echvi_4454 0.11 -1.6 5,330,223 + Echvi_4454 0.15 -1.6 5,330,307 + Echvi_4454 0.34 -0.5 5,330,307 + Echvi_4454 0.34 -0.5 5,330,308 - Echvi_4454 0.34 +0.3 5,330,308 - Echvi_4454 0.34 -1.4 5,330,308 - Echvi_4454 0.34 +0.8 5,330,308 - Echvi_4454 0.34 +2.6 5,330,309 + Echvi_4454 0.34 -1.9 5,330,309 + Echvi_4454 0.34 -0.2 5,330,309 + Echvi_4454 0.34 +0.8 5,330,309 + Echvi_4454 0.34 -0.1 5,330,309 + Echvi_4454 0.34 +0.8 5,330,309 + Echvi_4454 0.34 +1.1 5,330,310 - Echvi_4454 0.34 -0.2 5,330,310 - Echvi_4454 0.34 +0.3 5,330,311 + Echvi_4454 0.34 -0.3 5,330,311 + Echvi_4454 0.34 -0.4 5,330,311 + Echvi_4454 0.34 +0.9 5,330,311 + Echvi_4454 0.34 -1.1 5,330,311 + Echvi_4454 0.34 -0.6 5,330,311 + Echvi_4454 0.34 +0.4 5,330,311 + Echvi_4454 0.34 -0.8 5,330,312 - Echvi_4454 0.35 -0.9 5,330,312 - Echvi_4454 0.35 +0.3 5,330,337 + Echvi_4454 0.40 -1.3 5,330,395 - Echvi_4454 0.53 +0.1
Or see this region's nucleotide sequence