Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4255

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4254 and Echvi_4255 are separated by 28 nucleotidesEchvi_4255 and Echvi_4256 are separated by 21 nucleotides Echvi_4254: Echvi_4254 - Beta-xylosidase, at 5,102,057 to 5,103,193 _4254 Echvi_4255: Echvi_4255 - SusD family., at 5,103,222 to 5,104,895 _4255 Echvi_4256: Echvi_4256 - TonB-linked outer membrane protein, SusC/RagA family, at 5,104,917 to 5,107,745 _4256 Position (kb) 5103 5104 5105Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5102.226 kb on + strand, within Echvi_4254at 5102.226 kb on + strand, within Echvi_4254at 5102.226 kb on + strand, within Echvi_4254at 5102.226 kb on + strand, within Echvi_4254at 5102.226 kb on + strand, within Echvi_4254at 5102.231 kb on - strand, within Echvi_4254at 5102.248 kb on + strand, within Echvi_4254at 5102.368 kb on + strand, within Echvi_4254at 5102.369 kb on - strand, within Echvi_4254at 5102.370 kb on + strand, within Echvi_4254at 5102.370 kb on + strand, within Echvi_4254at 5102.371 kb on - strand, within Echvi_4254at 5102.371 kb on - strand, within Echvi_4254at 5102.373 kb on + strand, within Echvi_4254at 5102.374 kb on - strand, within Echvi_4254at 5102.517 kb on + strand, within Echvi_4254at 5102.517 kb on + strand, within Echvi_4254at 5102.663 kb on - strand, within Echvi_4254at 5102.699 kb on - strand, within Echvi_4254at 5102.733 kb on + strand, within Echvi_4254at 5102.733 kb on + strand, within Echvi_4254at 5102.733 kb on + strand, within Echvi_4254at 5102.770 kb on + strand, within Echvi_4254at 5102.782 kb on + strand, within Echvi_4254at 5102.844 kb on + strand, within Echvi_4254at 5102.844 kb on + strand, within Echvi_4254at 5102.844 kb on + strand, within Echvi_4254at 5102.844 kb on + strand, within Echvi_4254at 5102.844 kb on + strand, within Echvi_4254at 5102.845 kb on - strand, within Echvi_4254at 5102.845 kb on - strand, within Echvi_4254at 5102.943 kb on + strand, within Echvi_4254at 5102.944 kb on - strand, within Echvi_4254at 5102.945 kb on + strand, within Echvi_4254at 5102.945 kb on + strand, within Echvi_4254at 5102.945 kb on + strand, within Echvi_4254at 5103.010 kb on + strand, within Echvi_4254at 5103.010 kb on + strand, within Echvi_4254at 5103.010 kb on + strand, within Echvi_4254at 5103.010 kb on + strand, within Echvi_4254at 5103.010 kb on + strand, within Echvi_4254at 5103.010 kb on + strand, within Echvi_4254at 5103.010 kb on + strand, within Echvi_4254at 5103.011 kb on - strand, within Echvi_4254at 5103.011 kb on - strand, within Echvi_4254at 5103.011 kb on - strand, within Echvi_4254at 5103.028 kb on - strand, within Echvi_4254at 5103.151 kb on + strandat 5103.152 kb on - strandat 5103.176 kb on + strandat 5103.177 kb on - strandat 5103.178 kb on + strandat 5103.178 kb on + strandat 5103.178 kb on + strandat 5103.178 kb on + strandat 5103.181 kb on + strandat 5103.181 kb on + strandat 5103.181 kb on + strandat 5103.182 kb on - strandat 5103.188 kb on + strandat 5103.194 kb on + strandat 5103.195 kb on - strandat 5103.195 kb on - strandat 5103.200 kb on + strandat 5103.243 kb on + strandat 5103.243 kb on + strandat 5103.265 kb on - strandat 5103.286 kb on + strandat 5103.287 kb on - strandat 5103.331 kb on + strandat 5103.610 kb on - strand, within Echvi_4255at 5103.642 kb on + strand, within Echvi_4255at 5103.643 kb on - strand, within Echvi_4255at 5103.643 kb on - strand, within Echvi_4255at 5103.718 kb on + strand, within Echvi_4255at 5103.808 kb on + strand, within Echvi_4255at 5103.808 kb on + strand, within Echvi_4255at 5103.808 kb on + strand, within Echvi_4255at 5103.808 kb on + strand, within Echvi_4255at 5103.971 kb on + strand, within Echvi_4255at 5103.979 kb on - strand, within Echvi_4255at 5103.985 kb on + strand, within Echvi_4255at 5103.985 kb on + strand, within Echvi_4255at 5103.986 kb on - strand, within Echvi_4255at 5103.986 kb on - strand, within Echvi_4255at 5104.072 kb on + strand, within Echvi_4255at 5104.072 kb on + strand, within Echvi_4255at 5104.072 kb on + strand, within Echvi_4255at 5104.072 kb on + strand, within Echvi_4255at 5104.072 kb on + strand, within Echvi_4255at 5104.073 kb on - strand, within Echvi_4255at 5104.073 kb on - strand, within Echvi_4255at 5104.073 kb on - strand, within Echvi_4255at 5104.073 kb on - strand, within Echvi_4255at 5104.073 kb on - strand, within Echvi_4255at 5104.076 kb on + strand, within Echvi_4255at 5104.090 kb on + strand, within Echvi_4255at 5104.090 kb on + strand, within Echvi_4255at 5104.114 kb on + strand, within Echvi_4255at 5104.115 kb on - strand, within Echvi_4255at 5104.115 kb on - strand, within Echvi_4255at 5104.188 kb on + strand, within Echvi_4255at 5104.189 kb on - strand, within Echvi_4255at 5104.255 kb on + strand, within Echvi_4255at 5104.256 kb on - strand, within Echvi_4255at 5104.256 kb on - strand, within Echvi_4255at 5104.310 kb on + strand, within Echvi_4255at 5104.310 kb on + strand, within Echvi_4255at 5104.310 kb on + strand, within Echvi_4255at 5104.310 kb on + strand, within Echvi_4255at 5104.310 kb on + strand, within Echvi_4255at 5104.310 kb on + strand, within Echvi_4255at 5104.310 kb on + strand, within Echvi_4255at 5104.310 kb on + strand, within Echvi_4255at 5104.311 kb on - strand, within Echvi_4255at 5104.311 kb on - strand, within Echvi_4255at 5104.311 kb on - strand, within Echvi_4255at 5104.311 kb on - strand, within Echvi_4255at 5104.346 kb on - strand, within Echvi_4255at 5104.399 kb on + strand, within Echvi_4255at 5104.474 kb on - strand, within Echvi_4255at 5104.530 kb on - strand, within Echvi_4255at 5104.530 kb on - strand, within Echvi_4255at 5104.585 kb on + strand, within Echvi_4255at 5104.585 kb on + strand, within Echvi_4255at 5104.651 kb on - strand, within Echvi_4255at 5104.745 kb on - strandat 5104.752 kb on + strandat 5104.770 kb on - strandat 5104.775 kb on + strandat 5104.776 kb on - strandat 5104.777 kb on + strandat 5104.875 kb on + strandat 5104.887 kb on + strandat 5104.888 kb on - strandat 5104.943 kb on + strandat 5104.986 kb on + strandat 5105.019 kb on + strandat 5105.084 kb on + strandat 5105.085 kb on - strandat 5105.085 kb on - strandat 5105.086 kb on + strandat 5105.188 kb on + strandat 5105.272 kb on + strand, within Echvi_4256at 5105.342 kb on - strand, within Echvi_4256at 5105.366 kb on - strand, within Echvi_4256at 5105.366 kb on - strand, within Echvi_4256at 5105.370 kb on + strand, within Echvi_4256at 5105.446 kb on + strand, within Echvi_4256at 5105.447 kb on - strand, within Echvi_4256at 5105.451 kb on + strand, within Echvi_4256at 5105.452 kb on - strand, within Echvi_4256at 5105.596 kb on + strand, within Echvi_4256at 5105.596 kb on + strand, within Echvi_4256at 5105.597 kb on - strand, within Echvi_4256at 5105.630 kb on + strand, within Echvi_4256at 5105.652 kb on + strand, within Echvi_4256at 5105.652 kb on + strand, within Echvi_4256at 5105.652 kb on + strand, within Echvi_4256at 5105.652 kb on + strand, within Echvi_4256at 5105.653 kb on - strand, within Echvi_4256at 5105.668 kb on + strand, within Echvi_4256at 5105.669 kb on - strand, within Echvi_4256at 5105.698 kb on + strand, within Echvi_4256at 5105.723 kb on + strand, within Echvi_4256at 5105.726 kb on + strand, within Echvi_4256at 5105.749 kb on + strand, within Echvi_4256at 5105.749 kb on + strand, within Echvi_4256at 5105.783 kb on + strand, within Echvi_4256at 5105.805 kb on - strand, within Echvi_4256at 5105.808 kb on - strand, within Echvi_4256at 5105.808 kb on - strand, within Echvi_4256at 5105.808 kb on - strand, within Echvi_4256at 5105.885 kb on + strand, within Echvi_4256at 5105.885 kb on + strand, within Echvi_4256at 5105.885 kb on + strand, within Echvi_4256at 5105.885 kb on + strand, within Echvi_4256at 5105.886 kb on - strand, within Echvi_4256

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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5,102,226 + Echvi_4254 0.15 -0.9
5,102,226 + Echvi_4254 0.15 +0.6
5,102,226 + Echvi_4254 0.15 -0.2
5,102,226 + Echvi_4254 0.15 +2.2
5,102,226 + Echvi_4254 0.15 -0.5
5,102,231 - Echvi_4254 0.15 +0.5
5,102,248 + Echvi_4254 0.17 -0.5
5,102,368 + Echvi_4254 0.27 -0.5
5,102,369 - Echvi_4254 0.27 -0.6
5,102,370 + Echvi_4254 0.28 +0.2
5,102,370 + Echvi_4254 0.28 -0.7
5,102,371 - Echvi_4254 0.28 +1.4
5,102,371 - Echvi_4254 0.28 -2.5
5,102,373 + Echvi_4254 0.28 +0.9
5,102,374 - Echvi_4254 0.28 +0.4
5,102,517 + Echvi_4254 0.40 +0.6
5,102,517 + Echvi_4254 0.40 -0.1
5,102,663 - Echvi_4254 0.53 +1.1
5,102,699 - Echvi_4254 0.56 -1.7
5,102,733 + Echvi_4254 0.59 -0.4
5,102,733 + Echvi_4254 0.59 -1.0
5,102,733 + Echvi_4254 0.59 -0.1
5,102,770 + Echvi_4254 0.63 -0.2
5,102,782 + Echvi_4254 0.64 +0.6
5,102,844 + Echvi_4254 0.69 +0.3
5,102,844 + Echvi_4254 0.69 +1.2
5,102,844 + Echvi_4254 0.69 -0.3
5,102,844 + Echvi_4254 0.69 -2.0
5,102,844 + Echvi_4254 0.69 +1.1
5,102,845 - Echvi_4254 0.69 -2.1
5,102,845 - Echvi_4254 0.69 +0.2
5,102,943 + Echvi_4254 0.78 -0.4
5,102,944 - Echvi_4254 0.78 -1.4
5,102,945 + Echvi_4254 0.78 -0.4
5,102,945 + Echvi_4254 0.78 -0.9
5,102,945 + Echvi_4254 0.78 +1.2
5,103,010 + Echvi_4254 0.84 -2.2
5,103,010 + Echvi_4254 0.84 +0.9
5,103,010 + Echvi_4254 0.84 -0.7
5,103,010 + Echvi_4254 0.84 -2.3
5,103,010 + Echvi_4254 0.84 -1.1
5,103,010 + Echvi_4254 0.84 -0.5
5,103,010 + Echvi_4254 0.84 -3.0
5,103,011 - Echvi_4254 0.84 +0.5
5,103,011 - Echvi_4254 0.84 -1.5
5,103,011 - Echvi_4254 0.84 -0.2
5,103,028 - Echvi_4254 0.85 +0.5
5,103,151 + -1.0
5,103,152 - +0.6
5,103,176 + -0.6
5,103,177 - +0.8
5,103,178 + +0.4
5,103,178 + +2.4
5,103,178 + -0.4
5,103,178 + +2.4
5,103,181 + -1.4
5,103,181 + +1.8
5,103,181 + -1.9
5,103,182 - +0.4
5,103,188 + -0.9
5,103,194 + +0.1
5,103,195 - -2.6
5,103,195 - +0.8
5,103,200 + +0.5
5,103,243 + +0.0
5,103,243 + +0.1
5,103,265 - +0.5
5,103,286 + +0.6
5,103,287 - -2.7
5,103,331 + -0.4
5,103,610 - Echvi_4255 0.23 +1.1
5,103,642 + Echvi_4255 0.25 -0.8
5,103,643 - Echvi_4255 0.25 -1.1
5,103,643 - Echvi_4255 0.25 +1.3
5,103,718 + Echvi_4255 0.30 +0.4
5,103,808 + Echvi_4255 0.35 -0.3
5,103,808 + Echvi_4255 0.35 -0.4
5,103,808 + Echvi_4255 0.35 -0.7
5,103,808 + Echvi_4255 0.35 -0.2
5,103,971 + Echvi_4255 0.45 -0.9
5,103,979 - Echvi_4255 0.45 -0.1
5,103,985 + Echvi_4255 0.46 +1.4
5,103,985 + Echvi_4255 0.46 +2.1
5,103,986 - Echvi_4255 0.46 -0.2
5,103,986 - Echvi_4255 0.46 +1.4
5,104,072 + Echvi_4255 0.51 +0.6
5,104,072 + Echvi_4255 0.51 +0.8
5,104,072 + Echvi_4255 0.51 +0.4
5,104,072 + Echvi_4255 0.51 +0.8
5,104,072 + Echvi_4255 0.51 -1.2
5,104,073 - Echvi_4255 0.51 +0.7
5,104,073 - Echvi_4255 0.51 +1.7
5,104,073 - Echvi_4255 0.51 +0.8
5,104,073 - Echvi_4255 0.51 +0.2
5,104,073 - Echvi_4255 0.51 +1.6
5,104,076 + Echvi_4255 0.51 -0.2
5,104,090 + Echvi_4255 0.52 -1.0
5,104,090 + Echvi_4255 0.52 +0.1
5,104,114 + Echvi_4255 0.53 -1.1
5,104,115 - Echvi_4255 0.53 +1.6
5,104,115 - Echvi_4255 0.53 +2.0
5,104,188 + Echvi_4255 0.58 +0.8
5,104,189 - Echvi_4255 0.58 +2.2
5,104,255 + Echvi_4255 0.62 +0.6
5,104,256 - Echvi_4255 0.62 -0.1
5,104,256 - Echvi_4255 0.62 -0.0
5,104,310 + Echvi_4255 0.65 -1.1
5,104,310 + Echvi_4255 0.65 -1.8
5,104,310 + Echvi_4255 0.65 -0.7
5,104,310 + Echvi_4255 0.65 -0.6
5,104,310 + Echvi_4255 0.65 +1.8
5,104,310 + Echvi_4255 0.65 +0.6
5,104,310 + Echvi_4255 0.65 +1.6
5,104,310 + Echvi_4255 0.65 +0.4
5,104,311 - Echvi_4255 0.65 +0.9
5,104,311 - Echvi_4255 0.65 -1.2
5,104,311 - Echvi_4255 0.65 +0.8
5,104,311 - Echvi_4255 0.65 -2.1
5,104,346 - Echvi_4255 0.67 +1.2
5,104,399 + Echvi_4255 0.70 -0.8
5,104,474 - Echvi_4255 0.75 -0.4
5,104,530 - Echvi_4255 0.78 +0.8
5,104,530 - Echvi_4255 0.78 +0.1
5,104,585 + Echvi_4255 0.81 -0.4
5,104,585 + Echvi_4255 0.81 +0.4
5,104,651 - Echvi_4255 0.85 +2.8
5,104,745 - +1.0
5,104,752 + +0.3
5,104,770 - +1.0
5,104,775 + +0.7
5,104,776 - +0.8
5,104,777 + -0.8
5,104,875 + -0.2
5,104,887 + -0.2
5,104,888 - -0.4
5,104,943 + +0.7
5,104,986 + +0.9
5,105,019 + +0.9
5,105,084 + -0.9
5,105,085 - +0.5
5,105,085 - -0.2
5,105,086 + -1.0
5,105,188 + -0.8
5,105,272 + Echvi_4256 0.13 -1.8
5,105,342 - Echvi_4256 0.15 +0.7
5,105,366 - Echvi_4256 0.16 -0.0
5,105,366 - Echvi_4256 0.16 +0.5
5,105,370 + Echvi_4256 0.16 -0.4
5,105,446 + Echvi_4256 0.19 +0.3
5,105,447 - Echvi_4256 0.19 +0.2
5,105,451 + Echvi_4256 0.19 -1.5
5,105,452 - Echvi_4256 0.19 +1.3
5,105,596 + Echvi_4256 0.24 +0.6
5,105,596 + Echvi_4256 0.24 -0.3
5,105,597 - Echvi_4256 0.24 +0.5
5,105,630 + Echvi_4256 0.25 +0.6
5,105,652 + Echvi_4256 0.26 +0.9
5,105,652 + Echvi_4256 0.26 +0.0
5,105,652 + Echvi_4256 0.26 -1.0
5,105,652 + Echvi_4256 0.26 +0.5
5,105,653 - Echvi_4256 0.26 +0.5
5,105,668 + Echvi_4256 0.27 -1.8
5,105,669 - Echvi_4256 0.27 -0.4
5,105,698 + Echvi_4256 0.28 -0.3
5,105,723 + Echvi_4256 0.28 +1.5
5,105,726 + Echvi_4256 0.29 -1.0
5,105,749 + Echvi_4256 0.29 +1.0
5,105,749 + Echvi_4256 0.29 -1.8
5,105,783 + Echvi_4256 0.31 +0.4
5,105,805 - Echvi_4256 0.31 +0.7
5,105,808 - Echvi_4256 0.31 -0.5
5,105,808 - Echvi_4256 0.31 +1.8
5,105,808 - Echvi_4256 0.31 -1.0
5,105,885 + Echvi_4256 0.34 -0.6
5,105,885 + Echvi_4256 0.34 +0.2
5,105,885 + Echvi_4256 0.34 +0.3
5,105,885 + Echvi_4256 0.34 -0.4
5,105,886 - Echvi_4256 0.34 +1.1

Or see this region's nucleotide sequence