Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1702 and Echvi_1703 are separated by 200 nucleotides Echvi_1703 and Echvi_1704 are separated by 196 nucleotides
Echvi_1702: Echvi_1702 - hypothetical protein, at 2,001,272 to 2,003,731
_1702
Echvi_1703: Echvi_1703 - Uncharacterized protein conserved in bacteria, at 2,003,932 to 2,005,971
_1703
Echvi_1704: Echvi_1704 - hypothetical protein, at 2,006,168 to 2,006,872
_1704
Position (kb)
2003
2004
2005
2006 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2002.953 kb on + strand, within Echvi_1702 at 2002.956 kb on + strand, within Echvi_1702 at 2002.981 kb on + strand, within Echvi_1702 at 2002.981 kb on + strand, within Echvi_1702 at 2002.981 kb on + strand, within Echvi_1702 at 2002.982 kb on - strand, within Echvi_1702 at 2002.982 kb on - strand, within Echvi_1702 at 2002.982 kb on - strand, within Echvi_1702 at 2002.982 kb on - strand, within Echvi_1702 at 2002.982 kb on - strand, within Echvi_1702 at 2002.982 kb on - strand, within Echvi_1702 at 2002.982 kb on - strand, within Echvi_1702 at 2002.985 kb on + strand, within Echvi_1702 at 2002.986 kb on - strand, within Echvi_1702 at 2003.025 kb on - strand, within Echvi_1702 at 2003.094 kb on + strand, within Echvi_1702 at 2003.095 kb on - strand, within Echvi_1702 at 2003.114 kb on + strand, within Echvi_1702 at 2003.130 kb on - strand, within Echvi_1702 at 2003.193 kb on + strand, within Echvi_1702 at 2003.211 kb on + strand, within Echvi_1702 at 2003.212 kb on - strand, within Echvi_1702 at 2003.231 kb on - strand, within Echvi_1702 at 2003.231 kb on - strand, within Echvi_1702 at 2003.231 kb on - strand, within Echvi_1702 at 2003.625 kb on + strand at 2003.625 kb on + strand at 2003.672 kb on - strand at 2003.678 kb on - strand at 2003.739 kb on + strand at 2003.740 kb on - strand at 2003.919 kb on + strand at 2003.920 kb on - strand at 2003.925 kb on + strand at 2003.928 kb on + strand at 2003.928 kb on + strand at 2003.928 kb on + strand at 2003.929 kb on - strand at 2003.945 kb on - strand at 2003.948 kb on + strand at 2003.949 kb on - strand at 2004.133 kb on - strand at 2004.334 kb on - strand, within Echvi_1703 at 2004.334 kb on - strand, within Echvi_1703 at 2004.339 kb on + strand, within Echvi_1703 at 2004.339 kb on + strand, within Echvi_1703 at 2004.340 kb on - strand, within Echvi_1703 at 2004.404 kb on + strand, within Echvi_1703 at 2004.446 kb on - strand, within Echvi_1703 at 2004.450 kb on + strand, within Echvi_1703 at 2004.486 kb on + strand, within Echvi_1703 at 2004.487 kb on - strand, within Echvi_1703 at 2004.487 kb on - strand, within Echvi_1703 at 2004.504 kb on + strand, within Echvi_1703 at 2004.556 kb on - strand, within Echvi_1703 at 2004.604 kb on + strand, within Echvi_1703 at 2004.604 kb on + strand, within Echvi_1703 at 2004.604 kb on + strand, within Echvi_1703 at 2004.605 kb on - strand, within Echvi_1703 at 2004.626 kb on - strand, within Echvi_1703 at 2004.643 kb on - strand, within Echvi_1703 at 2004.776 kb on - strand, within Echvi_1703 at 2004.839 kb on + strand, within Echvi_1703 at 2004.904 kb on + strand, within Echvi_1703 at 2004.905 kb on - strand, within Echvi_1703 at 2004.934 kb on + strand, within Echvi_1703 at 2004.934 kb on + strand, within Echvi_1703 at 2004.934 kb on + strand, within Echvi_1703 at 2004.934 kb on + strand, within Echvi_1703 at 2004.935 kb on - strand, within Echvi_1703 at 2004.935 kb on - strand, within Echvi_1703 at 2004.971 kb on - strand, within Echvi_1703 at 2005.081 kb on + strand, within Echvi_1703 at 2005.081 kb on + strand, within Echvi_1703 at 2005.082 kb on - strand, within Echvi_1703 at 2005.082 kb on - strand, within Echvi_1703 at 2005.225 kb on + strand, within Echvi_1703 at 2005.225 kb on + strand, within Echvi_1703 at 2005.226 kb on - strand, within Echvi_1703 at 2005.227 kb on + strand, within Echvi_1703 at 2005.228 kb on - strand, within Echvi_1703 at 2005.228 kb on - strand, within Echvi_1703 at 2005.228 kb on - strand, within Echvi_1703 at 2005.228 kb on - strand, within Echvi_1703 at 2005.229 kb on + strand, within Echvi_1703 at 2005.230 kb on - strand, within Echvi_1703 at 2005.288 kb on + strand, within Echvi_1703 at 2005.288 kb on + strand, within Echvi_1703 at 2005.288 kb on + strand, within Echvi_1703 at 2005.288 kb on + strand, within Echvi_1703 at 2005.288 kb on + strand, within Echvi_1703 at 2005.289 kb on - strand, within Echvi_1703 at 2005.289 kb on - strand, within Echvi_1703 at 2005.294 kb on + strand, within Echvi_1703 at 2005.296 kb on + strand, within Echvi_1703 at 2005.296 kb on + strand, within Echvi_1703 at 2005.296 kb on + strand, within Echvi_1703 at 2005.296 kb on + strand, within Echvi_1703 at 2005.297 kb on - strand, within Echvi_1703 at 2005.297 kb on - strand, within Echvi_1703 at 2005.297 kb on - strand, within Echvi_1703 at 2005.297 kb on - strand, within Echvi_1703 at 2005.319 kb on - strand, within Echvi_1703 at 2005.319 kb on - strand, within Echvi_1703 at 2005.331 kb on - strand, within Echvi_1703 at 2005.331 kb on - strand, within Echvi_1703 at 2005.341 kb on + strand, within Echvi_1703 at 2005.399 kb on + strand, within Echvi_1703 at 2005.453 kb on + strand, within Echvi_1703 at 2005.454 kb on - strand, within Echvi_1703 at 2005.547 kb on - strand, within Echvi_1703 at 2005.547 kb on - strand, within Echvi_1703 at 2005.550 kb on + strand, within Echvi_1703 at 2005.550 kb on + strand, within Echvi_1703 at 2005.615 kb on + strand, within Echvi_1703 at 2005.615 kb on + strand, within Echvi_1703 at 2005.616 kb on - strand, within Echvi_1703 at 2005.816 kb on + strand at 2005.816 kb on + strand at 2005.816 kb on + strand at 2005.816 kb on + strand at 2005.817 kb on - strand at 2005.819 kb on + strand at 2005.819 kb on + strand at 2005.890 kb on + strand at 2005.907 kb on - strand at 2005.909 kb on + strand at 2005.910 kb on - strand at 2005.910 kb on - strand at 2005.970 kb on - strand at 2006.033 kb on + strand at 2006.034 kb on - strand at 2006.034 kb on - strand at 2006.051 kb on + strand at 2006.224 kb on + strand at 2006.229 kb on + strand at 2006.242 kb on + strand, within Echvi_1704 at 2006.242 kb on + strand, within Echvi_1704 at 2006.297 kb on + strand, within Echvi_1704 at 2006.297 kb on + strand, within Echvi_1704 at 2006.300 kb on + strand, within Echvi_1704 at 2006.301 kb on - strand, within Echvi_1704 at 2006.322 kb on - strand, within Echvi_1704 at 2006.337 kb on + strand, within Echvi_1704 at 2006.369 kb on + strand, within Echvi_1704 at 2006.369 kb on + strand, within Echvi_1704 at 2006.370 kb on - strand, within Echvi_1704 at 2006.404 kb on + strand, within Echvi_1704 at 2006.405 kb on - strand, within Echvi_1704 at 2006.420 kb on - strand, within Echvi_1704 at 2006.420 kb on - strand, within Echvi_1704 at 2006.420 kb on - strand, within Echvi_1704 at 2006.421 kb on + strand, within Echvi_1704 at 2006.421 kb on + strand, within Echvi_1704 at 2006.421 kb on + strand, within Echvi_1704 at 2006.421 kb on + strand, within Echvi_1704 at 2006.421 kb on + strand, within Echvi_1704 at 2006.421 kb on + strand, within Echvi_1704 at 2006.421 kb on + strand, within Echvi_1704 at 2006.422 kb on - strand, within Echvi_1704 at 2006.422 kb on - strand, within Echvi_1704 at 2006.422 kb on - strand, within Echvi_1704 at 2006.422 kb on - strand, within Echvi_1704 at 2006.475 kb on + strand, within Echvi_1704 at 2006.535 kb on + strand, within Echvi_1704 at 2006.535 kb on + strand, within Echvi_1704 at 2006.535 kb on + strand, within Echvi_1704 at 2006.535 kb on + strand, within Echvi_1704 at 2006.536 kb on - strand, within Echvi_1704 at 2006.581 kb on + strand, within Echvi_1704 at 2006.581 kb on + strand, within Echvi_1704 at 2006.581 kb on + strand, within Echvi_1704 at 2006.582 kb on - strand, within Echvi_1704 at 2006.582 kb on - strand, within Echvi_1704 at 2006.582 kb on - strand at 2006.599 kb on + strand, within Echvi_1704 at 2006.623 kb on + strand, within Echvi_1704 at 2006.623 kb on + strand, within Echvi_1704 at 2006.627 kb on - strand, within Echvi_1704 at 2006.627 kb on - strand, within Echvi_1704 at 2006.627 kb on - strand, within Echvi_1704 at 2006.635 kb on + strand, within Echvi_1704 at 2006.636 kb on - strand, within Echvi_1704 at 2006.659 kb on + strand, within Echvi_1704 at 2006.705 kb on + strand, within Echvi_1704 at 2006.706 kb on - strand, within Echvi_1704 at 2006.770 kb on + strand, within Echvi_1704 at 2006.770 kb on + strand, within Echvi_1704 at 2006.770 kb on + strand, within Echvi_1704 at 2006.770 kb on + strand, within Echvi_1704 at 2006.770 kb on + strand, within Echvi_1704 at 2006.770 kb on + strand, within Echvi_1704 at 2006.792 kb on + strand, within Echvi_1704 at 2006.792 kb on + strand, within Echvi_1704 at 2006.793 kb on - strand, within Echvi_1704 at 2006.902 kb on + strand at 2006.902 kb on + strand at 2006.903 kb on - strand at 2006.920 kb on + strand at 2006.920 kb on + strand at 2006.931 kb on + strand at 2006.932 kb on - strand at 2006.932 kb on - strand at 2006.945 kb on - strand at 2006.957 kb on - strand at 2006.968 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 2,002,953 + Echvi_1702 0.68 -0.4 2,002,956 + Echvi_1702 0.68 +1.0 2,002,981 + Echvi_1702 0.69 +0.6 2,002,981 + Echvi_1702 0.69 +1.0 2,002,981 + Echvi_1702 0.69 -0.6 2,002,982 - Echvi_1702 0.70 +0.5 2,002,982 - Echvi_1702 0.70 -1.4 2,002,982 - Echvi_1702 0.70 -1.0 2,002,982 - Echvi_1702 0.70 -0.1 2,002,982 - Echvi_1702 0.70 -0.2 2,002,982 - Echvi_1702 0.70 +1.7 2,002,982 - Echvi_1702 0.70 -1.0 2,002,985 + Echvi_1702 0.70 +0.1 2,002,986 - Echvi_1702 0.70 -0.6 2,003,025 - Echvi_1702 0.71 +0.4 2,003,094 + Echvi_1702 0.74 -1.9 2,003,095 - Echvi_1702 0.74 +1.0 2,003,114 + Echvi_1702 0.75 -0.6 2,003,130 - Echvi_1702 0.76 -1.3 2,003,193 + Echvi_1702 0.78 -0.6 2,003,211 + Echvi_1702 0.79 +0.2 2,003,212 - Echvi_1702 0.79 -1.6 2,003,231 - Echvi_1702 0.80 -0.6 2,003,231 - Echvi_1702 0.80 -2.7 2,003,231 - Echvi_1702 0.80 -0.3 2,003,625 + -0.5 2,003,625 + +0.7 2,003,672 - -2.0 2,003,678 - +0.4 2,003,739 + +0.3 2,003,740 - -0.6 2,003,919 + +0.4 2,003,920 - +0.9 2,003,925 + -1.7 2,003,928 + -0.3 2,003,928 + -0.2 2,003,928 + -1.4 2,003,929 - -1.3 2,003,945 - -1.4 2,003,948 + -1.4 2,003,949 - +0.8 2,004,133 - -1.0 2,004,334 - Echvi_1703 0.20 -0.6 2,004,334 - Echvi_1703 0.20 +0.7 2,004,339 + Echvi_1703 0.20 -1.7 2,004,339 + Echvi_1703 0.20 -1.5 2,004,340 - Echvi_1703 0.20 -1.4 2,004,404 + Echvi_1703 0.23 -0.5 2,004,446 - Echvi_1703 0.25 -0.7 2,004,450 + Echvi_1703 0.25 -0.2 2,004,486 + Echvi_1703 0.27 +3.0 2,004,487 - Echvi_1703 0.27 -0.0 2,004,487 - Echvi_1703 0.27 +0.2 2,004,504 + Echvi_1703 0.28 +0.2 2,004,556 - Echvi_1703 0.31 +0.2 2,004,604 + Echvi_1703 0.33 -0.9 2,004,604 + Echvi_1703 0.33 -0.3 2,004,604 + Echvi_1703 0.33 +0.3 2,004,605 - Echvi_1703 0.33 +0.5 2,004,626 - Echvi_1703 0.34 +0.3 2,004,643 - Echvi_1703 0.35 +1.0 2,004,776 - Echvi_1703 0.41 -0.4 2,004,839 + Echvi_1703 0.44 -1.1 2,004,904 + Echvi_1703 0.48 +0.7 2,004,905 - Echvi_1703 0.48 +0.5 2,004,934 + Echvi_1703 0.49 +0.1 2,004,934 + Echvi_1703 0.49 -0.4 2,004,934 + Echvi_1703 0.49 -1.0 2,004,934 + Echvi_1703 0.49 -0.4 2,004,935 - Echvi_1703 0.49 +0.2 2,004,935 - Echvi_1703 0.49 -1.3 2,004,971 - Echvi_1703 0.51 -0.8 2,005,081 + Echvi_1703 0.56 -0.7 2,005,081 + Echvi_1703 0.56 -0.1 2,005,082 - Echvi_1703 0.56 -0.9 2,005,082 - Echvi_1703 0.56 +0.9 2,005,225 + Echvi_1703 0.63 -0.8 2,005,225 + Echvi_1703 0.63 +0.6 2,005,226 - Echvi_1703 0.63 +0.4 2,005,227 + Echvi_1703 0.63 -0.0 2,005,228 - Echvi_1703 0.64 +0.7 2,005,228 - Echvi_1703 0.64 -2.8 2,005,228 - Echvi_1703 0.64 -1.8 2,005,228 - Echvi_1703 0.64 -0.5 2,005,229 + Echvi_1703 0.64 -2.1 2,005,230 - Echvi_1703 0.64 +0.2 2,005,288 + Echvi_1703 0.66 -0.4 2,005,288 + Echvi_1703 0.66 -0.2 2,005,288 + Echvi_1703 0.66 +0.2 2,005,288 + Echvi_1703 0.66 -1.9 2,005,288 + Echvi_1703 0.66 -1.7 2,005,289 - Echvi_1703 0.67 +0.9 2,005,289 - Echvi_1703 0.67 -0.8 2,005,294 + Echvi_1703 0.67 +1.2 2,005,296 + Echvi_1703 0.67 -0.6 2,005,296 + Echvi_1703 0.67 -0.1 2,005,296 + Echvi_1703 0.67 +0.1 2,005,296 + Echvi_1703 0.67 -1.3 2,005,297 - Echvi_1703 0.67 +0.8 2,005,297 - Echvi_1703 0.67 -1.4 2,005,297 - Echvi_1703 0.67 +0.5 2,005,297 - Echvi_1703 0.67 +0.8 2,005,319 - Echvi_1703 0.68 -2.0 2,005,319 - Echvi_1703 0.68 -2.3 2,005,331 - Echvi_1703 0.69 -0.4 2,005,331 - Echvi_1703 0.69 +0.2 2,005,341 + Echvi_1703 0.69 -2.4 2,005,399 + Echvi_1703 0.72 -0.3 2,005,453 + Echvi_1703 0.75 +0.2 2,005,454 - Echvi_1703 0.75 -0.1 2,005,547 - Echvi_1703 0.79 -1.1 2,005,547 - Echvi_1703 0.79 +0.4 2,005,550 + Echvi_1703 0.79 -0.4 2,005,550 + Echvi_1703 0.79 -2.3 2,005,615 + Echvi_1703 0.82 -0.2 2,005,615 + Echvi_1703 0.82 +0.8 2,005,616 - Echvi_1703 0.83 +0.4 2,005,816 + -1.3 2,005,816 + -0.4 2,005,816 + +0.0 2,005,816 + +1.8 2,005,817 - +0.5 2,005,819 + +1.8 2,005,819 + -0.1 2,005,890 + -1.8 2,005,907 - +0.3 2,005,909 + +0.0 2,005,910 - +0.5 2,005,910 - +0.8 2,005,970 - +0.8 2,006,033 + -0.1 2,006,034 - -1.4 2,006,034 - -1.1 2,006,051 + -2.1 2,006,224 + +0.6 2,006,229 + -0.1 2,006,242 + Echvi_1704 0.10 +0.2 2,006,242 + Echvi_1704 0.10 -0.1 2,006,297 + Echvi_1704 0.18 +2.2 2,006,297 + Echvi_1704 0.18 -0.6 2,006,300 + Echvi_1704 0.19 -0.7 2,006,301 - Echvi_1704 0.19 -2.6 2,006,322 - Echvi_1704 0.22 +1.6 2,006,337 + Echvi_1704 0.24 +0.4 2,006,369 + Echvi_1704 0.29 +1.4 2,006,369 + Echvi_1704 0.29 +1.5 2,006,370 - Echvi_1704 0.29 -0.6 2,006,404 + Echvi_1704 0.33 -1.8 2,006,405 - Echvi_1704 0.34 -0.6 2,006,420 - Echvi_1704 0.36 -2.1 2,006,420 - Echvi_1704 0.36 +0.1 2,006,420 - Echvi_1704 0.36 -0.2 2,006,421 + Echvi_1704 0.36 -1.3 2,006,421 + Echvi_1704 0.36 +1.5 2,006,421 + Echvi_1704 0.36 +1.8 2,006,421 + Echvi_1704 0.36 -0.9 2,006,421 + Echvi_1704 0.36 -0.7 2,006,421 + Echvi_1704 0.36 +0.2 2,006,421 + Echvi_1704 0.36 +1.0 2,006,422 - Echvi_1704 0.36 -0.3 2,006,422 - Echvi_1704 0.36 -1.4 2,006,422 - Echvi_1704 0.36 -1.6 2,006,422 - Echvi_1704 0.36 -1.0 2,006,475 + Echvi_1704 0.44 -1.9 2,006,535 + Echvi_1704 0.52 +0.9 2,006,535 + Echvi_1704 0.52 +0.5 2,006,535 + Echvi_1704 0.52 -0.3 2,006,535 + Echvi_1704 0.52 -0.8 2,006,536 - Echvi_1704 0.52 +0.2 2,006,581 + Echvi_1704 0.59 -0.2 2,006,581 + Echvi_1704 0.59 +1.7 2,006,581 + Echvi_1704 0.59 +0.6 2,006,582 - Echvi_1704 0.59 -0.3 2,006,582 - Echvi_1704 0.59 +1.2 2,006,582 - -0.3 2,006,599 + Echvi_1704 0.61 -0.3 2,006,623 + Echvi_1704 0.65 +0.7 2,006,623 + Echvi_1704 0.65 -1.4 2,006,627 - Echvi_1704 0.65 +0.3 2,006,627 - Echvi_1704 0.65 +0.9 2,006,627 - Echvi_1704 0.65 +1.2 2,006,635 + Echvi_1704 0.66 -0.1 2,006,636 - Echvi_1704 0.66 -0.1 2,006,659 + Echvi_1704 0.70 +0.1 2,006,705 + Echvi_1704 0.76 -0.1 2,006,706 - Echvi_1704 0.76 -0.3 2,006,770 + Echvi_1704 0.85 -0.2 2,006,770 + Echvi_1704 0.85 -0.6 2,006,770 + Echvi_1704 0.85 -1.1 2,006,770 + Echvi_1704 0.85 -2.6 2,006,770 + Echvi_1704 0.85 +0.6 2,006,770 + Echvi_1704 0.85 -2.2 2,006,792 + Echvi_1704 0.89 +0.7 2,006,792 + Echvi_1704 0.89 -1.8 2,006,793 - Echvi_1704 0.89 +0.3 2,006,902 + -0.2 2,006,902 + +0.5 2,006,903 - -0.0 2,006,920 + -0.8 2,006,920 + -2.1 2,006,931 + -0.8 2,006,932 - +1.0 2,006,932 - +0.6 2,006,945 - -0.9 2,006,957 - +1.5 2,006,968 - +0.5
Or see this region's nucleotide sequence