Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_1615 and Echvi_1616 are separated by 46 nucleotides Echvi_1616 and Echvi_1617 are separated by 12 nucleotides Echvi_1617 and Echvi_1618 are separated by 93 nucleotides
Echvi_1615: Echvi_1615 - Esterase/lipase, at 1,859,165 to 1,860,082
_1615
Echvi_1616: Echvi_1616 - hypothetical protein, at 1,860,129 to 1,860,314
_1616
Echvi_1617: Echvi_1617 - L-rhamnose transporter (from data) , at 1,860,327 to 1,861,769
_1617
Echvi_1618: Echvi_1618 - Transcriptional regulators, at 1,861,863 to 1,862,912
_1618
Position (kb)
1860
1861
1862 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1859.395 kb on + strand, within Echvi_1615 at 1859.395 kb on + strand, within Echvi_1615 at 1859.427 kb on + strand, within Echvi_1615 at 1859.625 kb on - strand, within Echvi_1615 at 1859.770 kb on + strand, within Echvi_1615 at 1859.773 kb on - strand, within Echvi_1615 at 1859.799 kb on - strand, within Echvi_1615 at 1859.833 kb on + strand, within Echvi_1615 at 1859.833 kb on + strand, within Echvi_1615 at 1859.835 kb on + strand, within Echvi_1615 at 1859.835 kb on + strand, within Echvi_1615 at 1859.964 kb on - strand, within Echvi_1615 at 1860.046 kb on + strand at 1860.095 kb on - strand at 1860.095 kb on - strand at 1860.110 kb on + strand at 1860.110 kb on + strand at 1860.111 kb on - strand at 1860.130 kb on + strand at 1860.180 kb on - strand, within Echvi_1616 at 1860.198 kb on + strand, within Echvi_1616 at 1860.198 kb on + strand, within Echvi_1616 at 1860.198 kb on + strand, within Echvi_1616 at 1860.199 kb on - strand, within Echvi_1616 at 1860.200 kb on + strand, within Echvi_1616 at 1860.264 kb on + strand, within Echvi_1616 at 1860.264 kb on + strand, within Echvi_1616 at 1860.271 kb on - strand, within Echvi_1616 at 1860.291 kb on + strand, within Echvi_1616 at 1860.294 kb on + strand, within Echvi_1616 at 1860.300 kb on - strand at 1860.415 kb on + strand at 1860.415 kb on + strand at 1860.416 kb on - strand at 1860.536 kb on + strand, within Echvi_1617 at 1860.566 kb on + strand, within Echvi_1617 at 1860.663 kb on + strand, within Echvi_1617 at 1860.664 kb on - strand, within Echvi_1617 at 1860.783 kb on + strand, within Echvi_1617 at 1860.783 kb on + strand, within Echvi_1617 at 1860.784 kb on - strand, within Echvi_1617 at 1860.784 kb on - strand, within Echvi_1617 at 1860.860 kb on + strand, within Echvi_1617 at 1860.915 kb on + strand, within Echvi_1617 at 1860.915 kb on + strand, within Echvi_1617 at 1860.915 kb on + strand, within Echvi_1617 at 1860.943 kb on + strand, within Echvi_1617 at 1860.943 kb on + strand, within Echvi_1617 at 1860.943 kb on + strand, within Echvi_1617 at 1860.944 kb on - strand, within Echvi_1617 at 1861.001 kb on - strand, within Echvi_1617 at 1861.005 kb on + strand, within Echvi_1617 at 1861.046 kb on + strand, within Echvi_1617 at 1861.046 kb on + strand, within Echvi_1617 at 1861.046 kb on + strand, within Echvi_1617 at 1861.229 kb on + strand, within Echvi_1617 at 1861.230 kb on - strand, within Echvi_1617 at 1861.304 kb on + strand, within Echvi_1617 at 1861.442 kb on + strand, within Echvi_1617 at 1861.442 kb on + strand, within Echvi_1617 at 1861.443 kb on - strand, within Echvi_1617 at 1861.443 kb on - strand, within Echvi_1617 at 1861.445 kb on - strand, within Echvi_1617 at 1861.445 kb on - strand, within Echvi_1617 at 1861.614 kb on + strand, within Echvi_1617 at 1861.720 kb on + strand at 1861.776 kb on - strand at 1861.776 kb on - strand at 1861.838 kb on + strand at 1861.853 kb on + strand at 1861.865 kb on - strand at 1861.865 kb on - strand at 1861.865 kb on - strand at 1861.868 kb on + strand at 1861.869 kb on - strand at 1861.889 kb on + strand at 1861.931 kb on + strand at 1861.932 kb on - strand at 1861.933 kb on + strand at 1861.933 kb on + strand at 1861.933 kb on + strand at 1861.933 kb on + strand at 1861.933 kb on + strand at 1861.934 kb on - strand at 1861.934 kb on - strand at 1862.014 kb on + strand, within Echvi_1618 at 1862.028 kb on + strand, within Echvi_1618 at 1862.043 kb on + strand, within Echvi_1618 at 1862.043 kb on + strand, within Echvi_1618 at 1862.043 kb on + strand, within Echvi_1618 at 1862.043 kb on + strand, within Echvi_1618 at 1862.044 kb on - strand, within Echvi_1618 at 1862.105 kb on + strand, within Echvi_1618 at 1862.107 kb on + strand, within Echvi_1618 at 1862.108 kb on - strand, within Echvi_1618 at 1862.108 kb on - strand, within Echvi_1618 at 1862.108 kb on - strand, within Echvi_1618 at 1862.108 kb on - strand, within Echvi_1618 at 1862.140 kb on + strand, within Echvi_1618 at 1862.173 kb on + strand, within Echvi_1618 at 1862.225 kb on - strand, within Echvi_1618 at 1862.225 kb on - strand, within Echvi_1618 at 1862.225 kb on - strand, within Echvi_1618 at 1862.247 kb on + strand, within Echvi_1618 at 1862.247 kb on + strand, within Echvi_1618 at 1862.248 kb on - strand, within Echvi_1618 at 1862.253 kb on + strand, within Echvi_1618 at 1862.258 kb on + strand, within Echvi_1618 at 1862.258 kb on + strand, within Echvi_1618 at 1862.300 kb on + strand, within Echvi_1618 at 1862.302 kb on + strand, within Echvi_1618 at 1862.302 kb on + strand, within Echvi_1618 at 1862.302 kb on + strand, within Echvi_1618 at 1862.303 kb on - strand, within Echvi_1618 at 1862.303 kb on - strand, within Echvi_1618 at 1862.316 kb on - strand, within Echvi_1618 at 1862.330 kb on + strand, within Echvi_1618 at 1862.330 kb on + strand, within Echvi_1618 at 1862.330 kb on + strand, within Echvi_1618 at 1862.331 kb on - strand, within Echvi_1618 at 1862.337 kb on + strand, within Echvi_1618 at 1862.338 kb on - strand, within Echvi_1618 at 1862.362 kb on + strand, within Echvi_1618 at 1862.362 kb on + strand, within Echvi_1618 at 1862.362 kb on + strand, within Echvi_1618 at 1862.362 kb on + strand, within Echvi_1618 at 1862.362 kb on + strand, within Echvi_1618 at 1862.363 kb on - strand, within Echvi_1618 at 1862.363 kb on - strand, within Echvi_1618 at 1862.363 kb on - strand, within Echvi_1618 at 1862.363 kb on - strand, within Echvi_1618 at 1862.363 kb on - strand, within Echvi_1618 at 1862.363 kb on - strand, within Echvi_1618 at 1862.363 kb on - strand, within Echvi_1618 at 1862.428 kb on + strand, within Echvi_1618 at 1862.429 kb on - strand, within Echvi_1618 at 1862.435 kb on + strand, within Echvi_1618 at 1862.436 kb on - strand, within Echvi_1618 at 1862.442 kb on + strand, within Echvi_1618 at 1862.442 kb on + strand, within Echvi_1618 at 1862.442 kb on + strand, within Echvi_1618 at 1862.443 kb on - strand, within Echvi_1618 at 1862.443 kb on - strand, within Echvi_1618 at 1862.468 kb on + strand, within Echvi_1618 at 1862.468 kb on + strand, within Echvi_1618 at 1862.468 kb on + strand, within Echvi_1618 at 1862.469 kb on - strand, within Echvi_1618 at 1862.472 kb on + strand, within Echvi_1618 at 1862.472 kb on + strand, within Echvi_1618 at 1862.473 kb on - strand, within Echvi_1618 at 1862.476 kb on + strand, within Echvi_1618 at 1862.477 kb on - strand, within Echvi_1618 at 1862.477 kb on - strand, within Echvi_1618 at 1862.477 kb on - strand, within Echvi_1618 at 1862.477 kb on - strand, within Echvi_1618 at 1862.477 kb on - strand, within Echvi_1618 at 1862.479 kb on + strand, within Echvi_1618 at 1862.479 kb on + strand, within Echvi_1618 at 1862.479 kb on + strand, within Echvi_1618 at 1862.479 kb on + strand at 1862.480 kb on - strand, within Echvi_1618 at 1862.517 kb on + strand, within Echvi_1618 at 1862.643 kb on + strand, within Echvi_1618 at 1862.643 kb on + strand, within Echvi_1618 at 1862.674 kb on + strand, within Echvi_1618 at 1862.674 kb on + strand, within Echvi_1618 at 1862.674 kb on + strand, within Echvi_1618 at 1862.674 kb on + strand, within Echvi_1618 at 1862.674 kb on + strand, within Echvi_1618 at 1862.675 kb on - strand, within Echvi_1618 at 1862.675 kb on - strand, within Echvi_1618 at 1862.675 kb on - strand, within Echvi_1618 at 1862.728 kb on + strand, within Echvi_1618 at 1862.728 kb on + strand, within Echvi_1618 at 1862.745 kb on - strand, within Echvi_1618 at 1862.759 kb on - strand, within Echvi_1618 at 1862.759 kb on - strand, within Echvi_1618 at 1862.761 kb on + strand, within Echvi_1618 at 1862.762 kb on - strand, within Echvi_1618 at 1862.762 kb on - strand, within Echvi_1618 at 1862.762 kb on - strand, within Echvi_1618
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 1,859,395 + Echvi_1615 0.25 -0.2 1,859,395 + Echvi_1615 0.25 +1.0 1,859,427 + Echvi_1615 0.29 +0.3 1,859,625 - Echvi_1615 0.50 -0.5 1,859,770 + Echvi_1615 0.66 +0.6 1,859,773 - Echvi_1615 0.66 -1.9 1,859,799 - Echvi_1615 0.69 -0.3 1,859,833 + Echvi_1615 0.73 -0.4 1,859,833 + Echvi_1615 0.73 -2.1 1,859,835 + Echvi_1615 0.73 +2.4 1,859,835 + Echvi_1615 0.73 +0.1 1,859,964 - Echvi_1615 0.87 +0.4 1,860,046 + -0.2 1,860,095 - +0.1 1,860,095 - +1.5 1,860,110 + -0.8 1,860,110 + +1.4 1,860,111 - -0.9 1,860,130 + +0.2 1,860,180 - Echvi_1616 0.27 -0.0 1,860,198 + Echvi_1616 0.37 -1.8 1,860,198 + Echvi_1616 0.37 -0.5 1,860,198 + Echvi_1616 0.37 +1.4 1,860,199 - Echvi_1616 0.38 -1.0 1,860,200 + Echvi_1616 0.38 +1.9 1,860,264 + Echvi_1616 0.73 -2.2 1,860,264 + Echvi_1616 0.73 -0.2 1,860,271 - Echvi_1616 0.76 +0.2 1,860,291 + Echvi_1616 0.87 -0.6 1,860,294 + Echvi_1616 0.89 +1.1 1,860,300 - -0.3 1,860,415 + -2.8 1,860,415 + +1.6 1,860,416 - +0.5 1,860,536 + Echvi_1617 0.14 -0.1 1,860,566 + Echvi_1617 0.17 -0.4 1,860,663 + Echvi_1617 0.23 -0.9 1,860,664 - Echvi_1617 0.23 +0.8 1,860,783 + Echvi_1617 0.32 -0.6 1,860,783 + Echvi_1617 0.32 -0.2 1,860,784 - Echvi_1617 0.32 -0.3 1,860,784 - Echvi_1617 0.32 -1.5 1,860,860 + Echvi_1617 0.37 -1.0 1,860,915 + Echvi_1617 0.41 +0.1 1,860,915 + Echvi_1617 0.41 -1.3 1,860,915 + Echvi_1617 0.41 -0.0 1,860,943 + Echvi_1617 0.43 -0.6 1,860,943 + Echvi_1617 0.43 +1.1 1,860,943 + Echvi_1617 0.43 -0.5 1,860,944 - Echvi_1617 0.43 -0.9 1,861,001 - Echvi_1617 0.47 -2.1 1,861,005 + Echvi_1617 0.47 -0.5 1,861,046 + Echvi_1617 0.50 -2.4 1,861,046 + Echvi_1617 0.50 -0.4 1,861,046 + Echvi_1617 0.50 -0.5 1,861,229 + Echvi_1617 0.63 +0.5 1,861,230 - Echvi_1617 0.63 +0.2 1,861,304 + Echvi_1617 0.68 +0.3 1,861,442 + Echvi_1617 0.77 +0.5 1,861,442 + Echvi_1617 0.77 -2.6 1,861,443 - Echvi_1617 0.77 +0.3 1,861,443 - Echvi_1617 0.77 -0.2 1,861,445 - Echvi_1617 0.77 -0.5 1,861,445 - Echvi_1617 0.77 +1.3 1,861,614 + Echvi_1617 0.89 -0.8 1,861,720 + +0.5 1,861,776 - +0.1 1,861,776 - +1.3 1,861,838 + -0.3 1,861,853 + -0.0 1,861,865 - -0.8 1,861,865 - -0.6 1,861,865 - +1.2 1,861,868 + +1.8 1,861,869 - -0.5 1,861,889 + +1.7 1,861,931 + -0.2 1,861,932 - +0.1 1,861,933 + -0.1 1,861,933 + +0.5 1,861,933 + +0.3 1,861,933 + +0.2 1,861,933 + +0.5 1,861,934 - +0.8 1,861,934 - +0.6 1,862,014 + Echvi_1618 0.14 +0.7 1,862,028 + Echvi_1618 0.16 +2.6 1,862,043 + Echvi_1618 0.17 +0.7 1,862,043 + Echvi_1618 0.17 -0.3 1,862,043 + Echvi_1618 0.17 +0.6 1,862,043 + Echvi_1618 0.17 +0.1 1,862,044 - Echvi_1618 0.17 +0.5 1,862,105 + Echvi_1618 0.23 -1.7 1,862,107 + Echvi_1618 0.23 -0.1 1,862,108 - Echvi_1618 0.23 -2.5 1,862,108 - Echvi_1618 0.23 +0.5 1,862,108 - Echvi_1618 0.23 -2.3 1,862,108 - Echvi_1618 0.23 -0.2 1,862,140 + Echvi_1618 0.26 -1.4 1,862,173 + Echvi_1618 0.30 +0.1 1,862,225 - Echvi_1618 0.34 -0.1 1,862,225 - Echvi_1618 0.34 +1.1 1,862,225 - Echvi_1618 0.34 +0.5 1,862,247 + Echvi_1618 0.37 -1.6 1,862,247 + Echvi_1618 0.37 +0.7 1,862,248 - Echvi_1618 0.37 -1.9 1,862,253 + Echvi_1618 0.37 -0.4 1,862,258 + Echvi_1618 0.38 -0.3 1,862,258 + Echvi_1618 0.38 -0.3 1,862,300 + Echvi_1618 0.42 +0.9 1,862,302 + Echvi_1618 0.42 -0.8 1,862,302 + Echvi_1618 0.42 -1.5 1,862,302 + Echvi_1618 0.42 +0.7 1,862,303 - Echvi_1618 0.42 +0.5 1,862,303 - Echvi_1618 0.42 +1.3 1,862,316 - Echvi_1618 0.43 -1.0 1,862,330 + Echvi_1618 0.44 +0.9 1,862,330 + Echvi_1618 0.44 -0.8 1,862,330 + Echvi_1618 0.44 -0.3 1,862,331 - Echvi_1618 0.45 -0.0 1,862,337 + Echvi_1618 0.45 -1.1 1,862,338 - Echvi_1618 0.45 -0.8 1,862,362 + Echvi_1618 0.48 -0.0 1,862,362 + Echvi_1618 0.48 +0.1 1,862,362 + Echvi_1618 0.48 +1.1 1,862,362 + Echvi_1618 0.48 +0.2 1,862,362 + Echvi_1618 0.48 -0.7 1,862,363 - Echvi_1618 0.48 -1.9 1,862,363 - Echvi_1618 0.48 +0.2 1,862,363 - Echvi_1618 0.48 -0.2 1,862,363 - Echvi_1618 0.48 +1.1 1,862,363 - Echvi_1618 0.48 -0.0 1,862,363 - Echvi_1618 0.48 -0.5 1,862,363 - Echvi_1618 0.48 -1.5 1,862,428 + Echvi_1618 0.54 +1.1 1,862,429 - Echvi_1618 0.54 +0.4 1,862,435 + Echvi_1618 0.54 +1.5 1,862,436 - Echvi_1618 0.55 -0.3 1,862,442 + Echvi_1618 0.55 -0.6 1,862,442 + Echvi_1618 0.55 +3.1 1,862,442 + Echvi_1618 0.55 -0.6 1,862,443 - Echvi_1618 0.55 -2.9 1,862,443 - Echvi_1618 0.55 -0.3 1,862,468 + Echvi_1618 0.58 +0.6 1,862,468 + Echvi_1618 0.58 -0.5 1,862,468 + Echvi_1618 0.58 -0.6 1,862,469 - Echvi_1618 0.58 -0.8 1,862,472 + Echvi_1618 0.58 -1.8 1,862,472 + Echvi_1618 0.58 -1.1 1,862,473 - Echvi_1618 0.58 -0.5 1,862,476 + Echvi_1618 0.58 +0.5 1,862,477 - Echvi_1618 0.58 -0.8 1,862,477 - Echvi_1618 0.58 -1.6 1,862,477 - Echvi_1618 0.58 +0.1 1,862,477 - Echvi_1618 0.58 -0.5 1,862,477 - Echvi_1618 0.58 +0.5 1,862,479 + Echvi_1618 0.59 -2.1 1,862,479 + Echvi_1618 0.59 -0.1 1,862,479 + Echvi_1618 0.59 +0.1 1,862,479 + +0.1 1,862,480 - Echvi_1618 0.59 +0.3 1,862,517 + Echvi_1618 0.62 +0.7 1,862,643 + Echvi_1618 0.74 -2.2 1,862,643 + Echvi_1618 0.74 +0.0 1,862,674 + Echvi_1618 0.77 -1.3 1,862,674 + Echvi_1618 0.77 +0.2 1,862,674 + Echvi_1618 0.77 -1.0 1,862,674 + Echvi_1618 0.77 -0.2 1,862,674 + Echvi_1618 0.77 +0.1 1,862,675 - Echvi_1618 0.77 +0.2 1,862,675 - Echvi_1618 0.77 +0.6 1,862,675 - Echvi_1618 0.77 +1.1 1,862,728 + Echvi_1618 0.82 -0.2 1,862,728 + Echvi_1618 0.82 +0.0 1,862,745 - Echvi_1618 0.84 +0.0 1,862,759 - Echvi_1618 0.85 +0.8 1,862,759 - Echvi_1618 0.85 -1.4 1,862,761 + Echvi_1618 0.86 +0.5 1,862,762 - Echvi_1618 0.86 +1.2 1,862,762 - Echvi_1618 0.86 -0.9 1,862,762 - Echvi_1618 0.86 +1.9
Or see this region's nucleotide sequence