Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1269

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1268 and Echvi_1269 are separated by 302 nucleotidesEchvi_1269 and Echvi_1270 are separated by 29 nucleotidesEchvi_1270 and Echvi_1271 are separated by 160 nucleotides Echvi_1268: Echvi_1268 - acetate--CoA ligase, at 1,454,088 to 1,455,986 _1268 Echvi_1269: Echvi_1269 - Predicted signal-transduction protein containing cAMP-binding and CBS domains, at 1,456,289 to 1,458,235 _1269 Echvi_1270: Echvi_1270 - DNA polymerase III, alpha subunit (gram-positive type), at 1,458,265 to 1,458,906 _1270 Echvi_1271: Echvi_1271 - hypothetical protein, at 1,459,067 to 1,459,258 _1271 Position (kb) 1456 1457 1458 1459Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1455.336 kb on - strand, within Echvi_1268at 1455.441 kb on - strand, within Echvi_1268at 1455.474 kb on + strand, within Echvi_1268at 1455.474 kb on + strand, within Echvi_1268at 1455.474 kb on + strand, within Echvi_1268at 1455.474 kb on + strand, within Echvi_1268at 1455.474 kb on + strand, within Echvi_1268at 1455.475 kb on - strand, within Echvi_1268at 1455.528 kb on + strand, within Echvi_1268at 1455.529 kb on - strand, within Echvi_1268at 1455.529 kb on - strand, within Echvi_1268at 1455.567 kb on + strand, within Echvi_1268at 1455.568 kb on - strand, within Echvi_1268at 1455.570 kb on + strand, within Echvi_1268at 1455.720 kb on + strand, within Echvi_1268at 1455.720 kb on + strand, within Echvi_1268at 1455.720 kb on + strand, within Echvi_1268at 1455.720 kb on + strand, within Echvi_1268at 1455.720 kb on + strand, within Echvi_1268at 1455.720 kb on + strand, within Echvi_1268at 1455.720 kb on + strand, within Echvi_1268at 1455.721 kb on - strand, within Echvi_1268at 1455.721 kb on - strand, within Echvi_1268at 1455.721 kb on - strand, within Echvi_1268at 1455.721 kb on - strand, within Echvi_1268at 1455.721 kb on - strand, within Echvi_1268at 1455.721 kb on - strand, within Echvi_1268at 1455.721 kb on - strand, within Echvi_1268at 1455.726 kb on + strand, within Echvi_1268at 1455.726 kb on + strand, within Echvi_1268at 1455.727 kb on - strand, within Echvi_1268at 1455.727 kb on - strand, within Echvi_1268at 1455.727 kb on - strand, within Echvi_1268at 1455.727 kb on - strand, within Echvi_1268at 1455.785 kb on + strand, within Echvi_1268at 1455.791 kb on + strand, within Echvi_1268at 1455.792 kb on - strand, within Echvi_1268at 1455.792 kb on - strand, within Echvi_1268at 1455.824 kb on + strandat 1455.881 kb on + strandat 1455.896 kb on - strandat 1455.926 kb on + strandat 1455.927 kb on - strandat 1455.927 kb on - strandat 1456.102 kb on + strandat 1456.102 kb on + strandat 1456.103 kb on - strandat 1456.201 kb on + strandat 1456.201 kb on + strandat 1456.201 kb on + strandat 1456.202 kb on - strandat 1456.207 kb on - strandat 1456.232 kb on + strandat 1456.233 kb on - strandat 1456.245 kb on + strandat 1456.309 kb on + strandat 1456.309 kb on + strandat 1456.400 kb on + strandat 1456.400 kb on + strandat 1456.401 kb on - strandat 1456.401 kb on - strandat 1456.401 kb on - strandat 1456.403 kb on + strandat 1456.404 kb on - strandat 1456.404 kb on - strandat 1456.405 kb on + strandat 1456.418 kb on + strandat 1456.577 kb on + strand, within Echvi_1269at 1456.577 kb on + strand, within Echvi_1269at 1456.577 kb on + strand, within Echvi_1269at 1456.577 kb on + strand, within Echvi_1269at 1456.578 kb on - strand, within Echvi_1269at 1456.578 kb on - strand, within Echvi_1269at 1456.578 kb on - strand, within Echvi_1269at 1456.578 kb on - strand, within Echvi_1269at 1456.616 kb on + strand, within Echvi_1269at 1456.636 kb on - strand, within Echvi_1269at 1456.676 kb on + strand, within Echvi_1269at 1456.714 kb on - strand, within Echvi_1269at 1456.714 kb on - strand, within Echvi_1269at 1456.978 kb on + strand, within Echvi_1269at 1456.978 kb on + strand, within Echvi_1269at 1456.979 kb on - strand, within Echvi_1269at 1457.061 kb on - strand, within Echvi_1269at 1457.085 kb on + strand, within Echvi_1269at 1457.157 kb on + strand, within Echvi_1269at 1457.287 kb on - strand, within Echvi_1269at 1457.331 kb on + strand, within Echvi_1269at 1457.331 kb on + strand, within Echvi_1269at 1457.332 kb on - strand, within Echvi_1269at 1457.332 kb on - strand, within Echvi_1269at 1457.332 kb on - strand, within Echvi_1269at 1457.338 kb on + strand, within Echvi_1269at 1457.339 kb on - strand, within Echvi_1269at 1457.385 kb on + strand, within Echvi_1269at 1457.501 kb on - strand, within Echvi_1269at 1457.501 kb on - strand, within Echvi_1269at 1457.501 kb on - strand, within Echvi_1269at 1457.513 kb on - strand, within Echvi_1269at 1457.522 kb on + strand, within Echvi_1269at 1457.646 kb on - strand, within Echvi_1269at 1457.724 kb on - strand, within Echvi_1269at 1457.761 kb on + strand, within Echvi_1269at 1457.761 kb on + strand, within Echvi_1269at 1457.765 kb on + strand, within Echvi_1269at 1457.766 kb on - strand, within Echvi_1269at 1457.766 kb on - strand, within Echvi_1269at 1457.905 kb on - strand, within Echvi_1269at 1457.957 kb on - strand, within Echvi_1269at 1457.971 kb on + strand, within Echvi_1269at 1457.972 kb on - strand, within Echvi_1269at 1458.032 kb on + strand, within Echvi_1269at 1458.053 kb on + strandat 1458.054 kb on - strandat 1458.060 kb on + strandat 1458.101 kb on - strandat 1458.118 kb on + strandat 1458.118 kb on + strandat 1458.118 kb on + strandat 1458.118 kb on + strandat 1458.119 kb on - strandat 1458.119 kb on - strandat 1458.221 kb on + strandat 1458.222 kb on - strandat 1458.248 kb on + strandat 1458.289 kb on + strandat 1458.289 kb on + strandat 1458.289 kb on + strandat 1458.289 kb on + strandat 1458.289 kb on + strandat 1458.582 kb on + strand, within Echvi_1270at 1458.583 kb on - strand, within Echvi_1270at 1458.632 kb on + strand, within Echvi_1270at 1458.633 kb on - strand, within Echvi_1270at 1458.637 kb on + strand, within Echvi_1270at 1458.638 kb on - strand, within Echvi_1270at 1458.748 kb on + strand, within Echvi_1270at 1458.750 kb on + strand, within Echvi_1270at 1458.775 kb on + strand, within Echvi_1270at 1458.775 kb on + strand, within Echvi_1270at 1458.801 kb on + strand, within Echvi_1270at 1458.801 kb on + strand, within Echvi_1270at 1458.884 kb on - strandat 1458.904 kb on + strandat 1458.908 kb on - strandat 1458.908 kb on - strandat 1458.908 kb on - strandat 1458.910 kb on + strandat 1458.913 kb on - strandat 1458.913 kb on - strandat 1458.945 kb on - strandat 1458.972 kb on - strandat 1458.975 kb on + strandat 1458.975 kb on + strandat 1458.976 kb on - strandat 1458.979 kb on + strandat 1458.979 kb on + strandat 1458.987 kb on + strandat 1458.989 kb on + strandat 1458.989 kb on + strandat 1458.990 kb on - strandat 1459.030 kb on + strandat 1459.051 kb on + strandat 1459.093 kb on + strand, within Echvi_1271at 1459.093 kb on + strand, within Echvi_1271at 1459.164 kb on + strand, within Echvi_1271at 1459.170 kb on - strand, within Echvi_1271at 1459.211 kb on + strand, within Echvi_1271at 1459.225 kb on - strand, within Echvi_1271

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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1,455,336 - Echvi_1268 0.66 +0.6
1,455,441 - Echvi_1268 0.71 +0.1
1,455,474 + Echvi_1268 0.73 -0.2
1,455,474 + Echvi_1268 0.73 +0.6
1,455,474 + Echvi_1268 0.73 -0.9
1,455,474 + Echvi_1268 0.73 -1.1
1,455,474 + Echvi_1268 0.73 -1.2
1,455,475 - Echvi_1268 0.73 -1.5
1,455,528 + Echvi_1268 0.76 -1.8
1,455,529 - Echvi_1268 0.76 -0.6
1,455,529 - Echvi_1268 0.76 -0.3
1,455,567 + Echvi_1268 0.78 +0.8
1,455,568 - Echvi_1268 0.78 +0.1
1,455,570 + Echvi_1268 0.78 +0.6
1,455,720 + Echvi_1268 0.86 +0.6
1,455,720 + Echvi_1268 0.86 -0.7
1,455,720 + Echvi_1268 0.86 +0.5
1,455,720 + Echvi_1268 0.86 -0.4
1,455,720 + Echvi_1268 0.86 -0.0
1,455,720 + Echvi_1268 0.86 +1.3
1,455,720 + Echvi_1268 0.86 -1.0
1,455,721 - Echvi_1268 0.86 +1.1
1,455,721 - Echvi_1268 0.86 -0.7
1,455,721 - Echvi_1268 0.86 +0.4
1,455,721 - Echvi_1268 0.86 -2.9
1,455,721 - Echvi_1268 0.86 -0.7
1,455,721 - Echvi_1268 0.86 +0.4
1,455,721 - Echvi_1268 0.86 +0.6
1,455,726 + Echvi_1268 0.86 -1.9
1,455,726 + Echvi_1268 0.86 -1.9
1,455,727 - Echvi_1268 0.86 +0.1
1,455,727 - Echvi_1268 0.86 +0.5
1,455,727 - Echvi_1268 0.86 +1.1
1,455,727 - Echvi_1268 0.86 -1.4
1,455,785 + Echvi_1268 0.89 -0.4
1,455,791 + Echvi_1268 0.90 -0.3
1,455,792 - Echvi_1268 0.90 +1.4
1,455,792 - Echvi_1268 0.90 -0.1
1,455,824 + -1.0
1,455,881 + -1.9
1,455,896 - +0.4
1,455,926 + -1.9
1,455,927 - +0.7
1,455,927 - +0.7
1,456,102 + +1.6
1,456,102 + -0.1
1,456,103 - +0.1
1,456,201 + +0.3
1,456,201 + -1.3
1,456,201 + -0.0
1,456,202 - -0.3
1,456,207 - +0.6
1,456,232 + -1.0
1,456,233 - -1.4
1,456,245 + +1.3
1,456,309 + -0.9
1,456,309 + -5.7
1,456,400 + -0.7
1,456,400 + -3.1
1,456,401 - -2.1
1,456,401 - -2.7
1,456,401 - -4.0
1,456,403 + -1.8
1,456,404 - -1.3
1,456,404 - -1.9
1,456,405 + -1.8
1,456,418 + -0.2
1,456,577 + Echvi_1269 0.15 -2.8
1,456,577 + Echvi_1269 0.15 -2.6
1,456,577 + Echvi_1269 0.15 -2.1
1,456,577 + Echvi_1269 0.15 -0.4
1,456,578 - Echvi_1269 0.15 -2.9
1,456,578 - Echvi_1269 0.15 -2.5
1,456,578 - Echvi_1269 0.15 -2.2
1,456,578 - Echvi_1269 0.15 -2.6
1,456,616 + Echvi_1269 0.17 -2.5
1,456,636 - Echvi_1269 0.18 -2.1
1,456,676 + Echvi_1269 0.20 -2.6
1,456,714 - Echvi_1269 0.22 -4.1
1,456,714 - Echvi_1269 0.22 -4.4
1,456,978 + Echvi_1269 0.35 -2.8
1,456,978 + Echvi_1269 0.35 -2.2
1,456,979 - Echvi_1269 0.35 -3.4
1,457,061 - Echvi_1269 0.40 -2.7
1,457,085 + Echvi_1269 0.41 +0.1
1,457,157 + Echvi_1269 0.45 -4.4
1,457,287 - Echvi_1269 0.51 -0.4
1,457,331 + Echvi_1269 0.54 -1.9
1,457,331 + Echvi_1269 0.54 -1.3
1,457,332 - Echvi_1269 0.54 -1.6
1,457,332 - Echvi_1269 0.54 +0.1
1,457,332 - Echvi_1269 0.54 -1.9
1,457,338 + Echvi_1269 0.54 -3.1
1,457,339 - Echvi_1269 0.54 -3.0
1,457,385 + Echvi_1269 0.56 -1.9
1,457,501 - Echvi_1269 0.62 -1.7
1,457,501 - Echvi_1269 0.62 -2.7
1,457,501 - Echvi_1269 0.62 +0.1
1,457,513 - Echvi_1269 0.63 -3.4
1,457,522 + Echvi_1269 0.63 -3.8
1,457,646 - Echvi_1269 0.70 -0.4
1,457,724 - Echvi_1269 0.74 -3.1
1,457,761 + Echvi_1269 0.76 -1.6
1,457,761 + Echvi_1269 0.76 +0.1
1,457,765 + Echvi_1269 0.76 -4.0
1,457,766 - Echvi_1269 0.76 -3.4
1,457,766 - Echvi_1269 0.76 -2.0
1,457,905 - Echvi_1269 0.83 -1.9
1,457,957 - Echvi_1269 0.86 -1.6
1,457,971 + Echvi_1269 0.86 -2.9
1,457,972 - Echvi_1269 0.86 -2.6
1,458,032 + Echvi_1269 0.90 -3.6
1,458,053 + -1.6
1,458,054 - -1.9
1,458,060 + -0.7
1,458,101 - -1.7
1,458,118 + -2.8
1,458,118 + -1.9
1,458,118 + -1.4
1,458,118 + -4.2
1,458,119 - +0.6
1,458,119 - -4.4
1,458,221 + +1.9
1,458,222 - -0.9
1,458,248 + -1.9
1,458,289 + -2.3
1,458,289 + -2.8
1,458,289 + -1.2
1,458,289 + -0.2
1,458,289 + -3.4
1,458,582 + Echvi_1270 0.49 -4.0
1,458,583 - Echvi_1270 0.50 -3.1
1,458,632 + Echvi_1270 0.57 -2.3
1,458,633 - Echvi_1270 0.57 -1.8
1,458,637 + Echvi_1270 0.58 -0.9
1,458,638 - Echvi_1270 0.58 -3.0
1,458,748 + Echvi_1270 0.75 -2.8
1,458,750 + Echvi_1270 0.76 -3.4
1,458,775 + Echvi_1270 0.79 -1.4
1,458,775 + Echvi_1270 0.79 -1.6
1,458,801 + Echvi_1270 0.83 -0.2
1,458,801 + Echvi_1270 0.83 -2.6
1,458,884 - +0.1
1,458,904 + +2.1
1,458,908 - -0.8
1,458,908 - -1.3
1,458,908 - -1.6
1,458,910 + +0.2
1,458,913 - +2.9
1,458,913 - -0.5
1,458,945 - -0.5
1,458,972 - -1.8
1,458,975 + -2.1
1,458,975 + -0.2
1,458,976 - +0.6
1,458,979 + +0.6
1,458,979 + -0.2
1,458,987 + +0.1
1,458,989 + -0.6
1,458,989 + +0.7
1,458,990 - +1.9
1,459,030 + -0.1
1,459,051 + +0.3
1,459,093 + Echvi_1271 0.14 -1.3
1,459,093 + Echvi_1271 0.14 +0.5
1,459,164 + Echvi_1271 0.51 -0.9
1,459,170 - Echvi_1271 0.54 -0.1
1,459,211 + Echvi_1271 0.75 +0.1
1,459,225 - Echvi_1271 0.82 -1.9

Or see this region's nucleotide sequence