Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0838 and Echvi_0839 are separated by 642 nucleotides Echvi_0839 and Echvi_0840 are separated by 72 nucleotides Echvi_0840 and Echvi_0841 are separated by 513 nucleotides
Echvi_0838: Echvi_0838 - Outer membrane receptor for ferrienterochelin and colicins, at 955,318 to 958,470
_0838
Echvi_0839: Echvi_0839 - Predicted membrane protein, at 959,113 to 959,811
_0839
Echvi_0840: Echvi_0840 - hypothetical protein, at 959,884 to 960,039
_0840
Echvi_0841: Echvi_0841 - aspartyl-tRNA synthetase, bacterial type, at 960,553 to 962,307
_0841
Position (kb) 959
960 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 958.139 kb on - strand, within Echvi_0838 at 958.219 kb on + strand at 958.220 kb on - strand at 958.242 kb on + strand at 958.263 kb on - strand at 958.263 kb on - strand at 958.274 kb on - strand at 958.294 kb on - strand at 958.325 kb on + strand at 958.436 kb on + strand at 958.436 kb on + strand at 958.436 kb on + strand at 958.436 kb on + strand at 958.437 kb on - strand at 958.437 kb on - strand at 958.487 kb on - strand at 958.489 kb on + strand at 958.492 kb on + strand at 958.492 kb on + strand at 958.493 kb on - strand at 958.493 kb on - strand at 958.493 kb on - strand at 958.493 kb on - strand at 958.504 kb on - strand at 958.708 kb on + strand at 958.708 kb on + strand at 958.708 kb on + strand at 958.817 kb on + strand at 958.860 kb on + strand at 958.915 kb on - strand at 958.915 kb on - strand at 958.976 kb on + strand at 958.989 kb on + strand at 958.993 kb on + strand at 958.993 kb on + strand at 958.994 kb on - strand at 958.997 kb on + strand at 958.997 kb on + strand at 958.997 kb on + strand at 958.998 kb on - strand at 958.998 kb on - strand at 958.998 kb on - strand at 959.054 kb on + strand at 959.055 kb on - strand at 959.055 kb on - strand at 959.060 kb on - strand at 959.129 kb on + strand at 959.140 kb on + strand at 959.140 kb on + strand at 959.140 kb on + strand at 959.140 kb on + strand at 959.140 kb on + strand at 959.141 kb on - strand at 959.141 kb on - strand at 959.141 kb on - strand at 959.141 kb on - strand at 959.146 kb on + strand at 959.147 kb on - strand at 959.150 kb on + strand at 959.150 kb on + strand at 959.210 kb on - strand, within Echvi_0839 at 959.210 kb on - strand, within Echvi_0839 at 959.210 kb on - strand, within Echvi_0839 at 959.210 kb on - strand, within Echvi_0839 at 959.210 kb on - strand, within Echvi_0839 at 959.211 kb on + strand, within Echvi_0839 at 959.211 kb on + strand, within Echvi_0839 at 959.211 kb on + strand, within Echvi_0839 at 959.212 kb on - strand, within Echvi_0839 at 959.212 kb on - strand, within Echvi_0839 at 959.212 kb on - strand, within Echvi_0839 at 959.232 kb on - strand, within Echvi_0839 at 959.232 kb on - strand, within Echvi_0839 at 959.232 kb on - strand, within Echvi_0839 at 959.232 kb on - strand, within Echvi_0839 at 959.268 kb on - strand, within Echvi_0839 at 959.393 kb on + strand, within Echvi_0839 at 959.398 kb on + strand, within Echvi_0839 at 959.398 kb on + strand, within Echvi_0839 at 959.399 kb on - strand, within Echvi_0839 at 959.399 kb on - strand, within Echvi_0839 at 959.399 kb on - strand, within Echvi_0839 at 959.399 kb on - strand, within Echvi_0839 at 959.400 kb on + strand, within Echvi_0839 at 959.400 kb on + strand, within Echvi_0839 at 959.400 kb on + strand, within Echvi_0839 at 959.401 kb on - strand, within Echvi_0839 at 959.401 kb on - strand, within Echvi_0839 at 959.401 kb on - strand, within Echvi_0839 at 959.401 kb on - strand, within Echvi_0839 at 959.401 kb on - strand, within Echvi_0839 at 959.474 kb on - strand, within Echvi_0839 at 959.488 kb on + strand, within Echvi_0839 at 959.507 kb on + strand, within Echvi_0839 at 959.510 kb on - strand, within Echvi_0839 at 959.510 kb on - strand, within Echvi_0839 at 959.560 kb on + strand, within Echvi_0839 at 959.620 kb on - strand, within Echvi_0839 at 959.620 kb on - strand, within Echvi_0839 at 959.631 kb on + strand, within Echvi_0839 at 959.631 kb on + strand, within Echvi_0839 at 959.632 kb on - strand, within Echvi_0839 at 959.632 kb on - strand, within Echvi_0839 at 959.633 kb on + strand, within Echvi_0839 at 959.639 kb on + strand, within Echvi_0839 at 959.639 kb on + strand, within Echvi_0839 at 959.639 kb on + strand, within Echvi_0839 at 959.639 kb on + strand, within Echvi_0839 at 959.640 kb on - strand, within Echvi_0839 at 959.640 kb on - strand, within Echvi_0839 at 959.640 kb on - strand, within Echvi_0839 at 959.640 kb on - strand, within Echvi_0839 at 959.640 kb on - strand, within Echvi_0839 at 959.640 kb on - strand, within Echvi_0839 at 959.643 kb on + strand, within Echvi_0839 at 959.646 kb on - strand, within Echvi_0839 at 959.646 kb on - strand, within Echvi_0839 at 959.676 kb on + strand, within Echvi_0839 at 959.676 kb on + strand, within Echvi_0839 at 959.677 kb on - strand, within Echvi_0839 at 959.708 kb on + strand, within Echvi_0839 at 959.708 kb on + strand, within Echvi_0839 at 959.823 kb on + strand at 959.848 kb on + strand at 959.848 kb on + strand at 959.848 kb on + strand at 959.848 kb on + strand at 959.848 kb on + strand at 959.848 kb on + strand at 959.849 kb on - strand at 959.849 kb on - strand at 959.861 kb on + strand at 959.861 kb on + strand at 959.927 kb on + strand, within Echvi_0840 at 959.928 kb on - strand, within Echvi_0840 at 959.928 kb on - strand, within Echvi_0840 at 959.938 kb on - strand, within Echvi_0840 at 959.938 kb on - strand, within Echvi_0840 at 959.962 kb on - strand, within Echvi_0840 at 960.011 kb on + strand, within Echvi_0840 at 960.011 kb on + strand, within Echvi_0840 at 960.011 kb on + strand, within Echvi_0840 at 960.011 kb on + strand, within Echvi_0840 at 960.013 kb on + strand, within Echvi_0840 at 960.100 kb on - strand at 960.111 kb on + strand at 960.180 kb on - strand at 960.195 kb on + strand at 960.195 kb on + strand at 960.232 kb on + strand at 960.232 kb on + strand at 960.233 kb on - strand at 960.242 kb on - strand at 960.276 kb on + strand at 960.277 kb on - strand at 960.277 kb on - strand at 960.303 kb on + strand at 960.304 kb on - strand at 960.309 kb on + strand at 960.318 kb on - strand at 960.378 kb on + strand at 960.379 kb on - strand at 960.423 kb on + strand at 960.424 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 958,139 - Echvi_0838 0.89 +0.2 958,219 + +1.0 958,220 - -0.1 958,242 + +0.6 958,263 - -0.7 958,263 - -1.0 958,274 - +0.3 958,294 - -0.2 958,325 + -1.1 958,436 + +0.2 958,436 + -0.1 958,436 + -3.0 958,436 + +0.0 958,437 - -0.2 958,437 - -1.5 958,487 - -0.7 958,489 + -0.2 958,492 + -1.9 958,492 + -0.8 958,493 - +1.6 958,493 - +1.1 958,493 - +0.7 958,493 - +0.6 958,504 - -0.0 958,708 + -1.3 958,708 + +0.1 958,708 + +0.0 958,817 + -0.1 958,860 + -0.5 958,915 - +2.9 958,915 - +0.1 958,976 + +0.9 958,989 + +1.2 958,993 + +1.2 958,993 + -0.0 958,994 - -0.4 958,997 + -2.1 958,997 + +0.3 958,997 + +0.3 958,998 - -2.3 958,998 - -0.7 958,998 - +1.5 959,054 + -1.6 959,055 - +1.4 959,055 - -0.3 959,060 - -1.0 959,129 + +0.4 959,140 + -0.0 959,140 + -0.8 959,140 + +0.2 959,140 + -0.1 959,140 + -0.9 959,141 - +0.5 959,141 - -1.0 959,141 - -0.4 959,141 - +0.3 959,146 + -1.0 959,147 - -0.2 959,150 + -0.3 959,150 + +0.9 959,210 - Echvi_0839 0.14 +0.1 959,210 - Echvi_0839 0.14 +0.7 959,210 - Echvi_0839 0.14 +0.2 959,210 - Echvi_0839 0.14 +1.5 959,210 - Echvi_0839 0.14 +1.7 959,211 + Echvi_0839 0.14 +0.1 959,211 + Echvi_0839 0.14 -0.2 959,211 + Echvi_0839 0.14 +0.4 959,212 - Echvi_0839 0.14 -0.4 959,212 - Echvi_0839 0.14 +0.3 959,212 - Echvi_0839 0.14 +0.1 959,232 - Echvi_0839 0.17 +0.3 959,232 - Echvi_0839 0.17 +0.6 959,232 - Echvi_0839 0.17 -1.1 959,232 - Echvi_0839 0.17 -0.3 959,268 - Echvi_0839 0.22 +1.1 959,393 + Echvi_0839 0.40 +0.8 959,398 + Echvi_0839 0.41 +0.1 959,398 + Echvi_0839 0.41 -1.3 959,399 - Echvi_0839 0.41 -0.4 959,399 - Echvi_0839 0.41 -1.9 959,399 - Echvi_0839 0.41 -2.0 959,399 - Echvi_0839 0.41 -0.7 959,400 + Echvi_0839 0.41 +0.5 959,400 + Echvi_0839 0.41 -2.0 959,400 + Echvi_0839 0.41 -0.0 959,401 - Echvi_0839 0.41 -0.6 959,401 - Echvi_0839 0.41 +0.2 959,401 - Echvi_0839 0.41 -0.6 959,401 - Echvi_0839 0.41 +0.5 959,401 - Echvi_0839 0.41 +0.1 959,474 - Echvi_0839 0.52 -1.2 959,488 + Echvi_0839 0.54 +0.0 959,507 + Echvi_0839 0.56 +0.8 959,510 - Echvi_0839 0.57 +1.5 959,510 - Echvi_0839 0.57 +1.7 959,560 + Echvi_0839 0.64 +1.1 959,620 - Echvi_0839 0.73 +0.7 959,620 - Echvi_0839 0.73 -1.5 959,631 + Echvi_0839 0.74 -1.6 959,631 + Echvi_0839 0.74 -1.1 959,632 - Echvi_0839 0.74 -0.2 959,632 - Echvi_0839 0.74 -1.1 959,633 + Echvi_0839 0.74 +0.2 959,639 + Echvi_0839 0.75 +1.3 959,639 + Echvi_0839 0.75 +0.3 959,639 + Echvi_0839 0.75 -0.2 959,639 + Echvi_0839 0.75 -1.7 959,640 - Echvi_0839 0.75 -0.8 959,640 - Echvi_0839 0.75 -0.2 959,640 - Echvi_0839 0.75 -0.1 959,640 - Echvi_0839 0.75 -0.1 959,640 - Echvi_0839 0.75 -1.6 959,640 - Echvi_0839 0.75 +0.7 959,643 + Echvi_0839 0.76 -2.0 959,646 - Echvi_0839 0.76 +0.0 959,646 - Echvi_0839 0.76 +1.8 959,676 + Echvi_0839 0.81 -2.6 959,676 + Echvi_0839 0.81 -1.6 959,677 - Echvi_0839 0.81 +1.2 959,708 + Echvi_0839 0.85 -1.9 959,708 + Echvi_0839 0.85 -0.4 959,823 + +0.1 959,848 + +0.9 959,848 + -1.6 959,848 + +2.1 959,848 + -0.6 959,848 + +0.4 959,848 + -0.3 959,849 - -0.2 959,849 - +1.0 959,861 + -0.0 959,861 + -0.3 959,927 + Echvi_0840 0.28 -1.1 959,928 - Echvi_0840 0.28 -0.2 959,928 - Echvi_0840 0.28 +0.2 959,938 - Echvi_0840 0.35 -2.1 959,938 - Echvi_0840 0.35 +1.2 959,962 - Echvi_0840 0.50 -0.5 960,011 + Echvi_0840 0.81 -0.7 960,011 + Echvi_0840 0.81 -0.7 960,011 + Echvi_0840 0.81 -1.3 960,011 + Echvi_0840 0.81 -1.0 960,013 + Echvi_0840 0.83 +1.1 960,100 - -0.7 960,111 + -1.3 960,180 - -0.8 960,195 + -0.3 960,195 + -0.2 960,232 + -0.2 960,232 + -0.4 960,233 - -0.2 960,242 - +1.0 960,276 + -0.9 960,277 - +0.2 960,277 - +0.4 960,303 + -1.0 960,304 - +0.3 960,309 + -2.2 960,318 - -0.4 960,378 + +2.9 960,379 - +0.7 960,423 + -2.4 960,424 - +0.3
Or see this region's nucleotide sequence