Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0585 and Echvi_0586 are separated by 159 nucleotides Echvi_0586 and Echvi_0587 are separated by 59 nucleotides Echvi_0587 and Echvi_0588 overlap by 4 nucleotides Echvi_0588 and Echvi_0589 are separated by 76 nucleotides
Echvi_0585: Echvi_0585 - Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase., at 662,895 to 664,133
_0585
Echvi_0586: Echvi_0586 - DNA-binding ferritin-like protein (oxidative damage protectant), at 664,293 to 664,763
_0586
Echvi_0587: Echvi_0587 - ABC-type Na+ efflux pump, permease component, at 664,823 to 666,133
_0587
Echvi_0588: Echvi_0588 - ABC-type uncharacterized transport system, ATPase component, at 666,130 to 667,029
_0588
Echvi_0589: Echvi_0589 - hypothetical protein, at 667,106 to 667,942
_0589
Position (kb) 664
665
666
667 Strain fitness (log2 ratio) -2
-1
0
1
2 at 663.824 kb on + strand, within Echvi_0585 at 663.825 kb on - strand, within Echvi_0585 at 663.935 kb on + strand, within Echvi_0585 at 663.935 kb on + strand, within Echvi_0585 at 663.935 kb on + strand, within Echvi_0585 at 663.946 kb on + strand, within Echvi_0585 at 663.946 kb on + strand, within Echvi_0585 at 663.947 kb on - strand, within Echvi_0585 at 663.947 kb on - strand, within Echvi_0585 at 663.965 kb on - strand, within Echvi_0585 at 663.971 kb on + strand, within Echvi_0585 at 664.014 kb on - strand at 664.014 kb on - strand at 664.019 kb on + strand at 664.019 kb on + strand at 664.019 kb on + strand at 664.020 kb on - strand at 664.021 kb on + strand at 664.021 kb on + strand at 664.022 kb on - strand at 664.024 kb on + strand at 664.024 kb on + strand at 664.024 kb on + strand at 664.024 kb on + strand at 664.025 kb on - strand at 664.025 kb on - strand at 664.029 kb on - strand at 664.038 kb on - strand at 664.038 kb on - strand at 664.040 kb on + strand at 664.075 kb on - strand at 664.093 kb on + strand at 664.095 kb on + strand at 664.095 kb on + strand at 664.096 kb on - strand at 664.134 kb on + strand at 664.135 kb on - strand at 664.163 kb on - strand at 664.172 kb on + strand at 664.176 kb on + strand at 664.176 kb on + strand at 664.176 kb on + strand at 664.177 kb on - strand at 664.177 kb on - strand at 664.177 kb on - strand at 664.177 kb on - strand at 664.177 kb on - strand at 664.178 kb on + strand at 664.196 kb on - strand at 664.196 kb on - strand at 664.196 kb on - strand at 664.199 kb on + strand at 664.199 kb on + strand at 664.200 kb on - strand at 664.203 kb on - strand at 664.203 kb on - strand at 664.219 kb on - strand at 664.287 kb on + strand at 664.289 kb on + strand at 664.289 kb on + strand at 664.290 kb on - strand at 664.301 kb on + strand at 664.328 kb on + strand at 664.380 kb on + strand, within Echvi_0586 at 664.384 kb on - strand, within Echvi_0586 at 664.461 kb on + strand, within Echvi_0586 at 664.509 kb on - strand, within Echvi_0586 at 664.545 kb on + strand, within Echvi_0586 at 664.545 kb on + strand, within Echvi_0586 at 664.711 kb on - strand, within Echvi_0586 at 664.711 kb on - strand, within Echvi_0586 at 664.713 kb on - strand, within Echvi_0586 at 664.757 kb on + strand at 664.758 kb on - strand at 664.758 kb on - strand at 664.819 kb on + strand at 664.819 kb on + strand at 664.824 kb on + strand at 664.824 kb on + strand at 664.860 kb on + strand at 664.888 kb on + strand at 664.901 kb on + strand at 664.901 kb on + strand at 664.902 kb on - strand at 665.021 kb on - strand, within Echvi_0587 at 665.021 kb on - strand, within Echvi_0587 at 665.080 kb on + strand, within Echvi_0587 at 665.190 kb on + strand, within Echvi_0587 at 665.506 kb on + strand, within Echvi_0587 at 665.545 kb on + strand, within Echvi_0587 at 665.550 kb on + strand, within Echvi_0587 at 665.551 kb on - strand, within Echvi_0587 at 665.568 kb on + strand, within Echvi_0587 at 665.568 kb on + strand, within Echvi_0587 at 665.569 kb on - strand, within Echvi_0587 at 665.680 kb on + strand, within Echvi_0587 at 665.732 kb on + strand, within Echvi_0587 at 665.734 kb on + strand, within Echvi_0587 at 665.734 kb on + strand, within Echvi_0587 at 665.735 kb on - strand, within Echvi_0587 at 665.735 kb on - strand, within Echvi_0587 at 665.741 kb on - strand, within Echvi_0587 at 665.822 kb on + strand, within Echvi_0587 at 665.823 kb on - strand, within Echvi_0587 at 665.823 kb on - strand, within Echvi_0587 at 665.839 kb on + strand, within Echvi_0587 at 665.839 kb on + strand, within Echvi_0587 at 665.840 kb on - strand, within Echvi_0587 at 665.841 kb on + strand, within Echvi_0587 at 665.841 kb on + strand, within Echvi_0587 at 665.841 kb on + strand, within Echvi_0587 at 665.841 kb on + strand at 665.843 kb on + strand, within Echvi_0587 at 665.843 kb on + strand, within Echvi_0587 at 665.843 kb on + strand, within Echvi_0587 at 665.843 kb on + strand, within Echvi_0587 at 665.844 kb on - strand, within Echvi_0587 at 665.844 kb on - strand, within Echvi_0587 at 665.844 kb on - strand, within Echvi_0587 at 665.908 kb on - strand, within Echvi_0587 at 665.919 kb on + strand, within Echvi_0587 at 665.920 kb on - strand, within Echvi_0587 at 665.920 kb on - strand at 665.963 kb on + strand, within Echvi_0587 at 665.964 kb on - strand, within Echvi_0587 at 665.964 kb on - strand, within Echvi_0587 at 666.026 kb on + strand at 666.061 kb on + strand at 666.128 kb on - strand at 666.284 kb on + strand, within Echvi_0588 at 666.284 kb on + strand, within Echvi_0588 at 666.343 kb on + strand, within Echvi_0588 at 666.344 kb on - strand, within Echvi_0588 at 666.349 kb on - strand, within Echvi_0588 at 666.355 kb on - strand, within Echvi_0588 at 666.429 kb on + strand, within Echvi_0588 at 666.429 kb on + strand, within Echvi_0588 at 666.429 kb on + strand, within Echvi_0588 at 666.449 kb on - strand, within Echvi_0588 at 666.468 kb on + strand, within Echvi_0588 at 666.469 kb on - strand, within Echvi_0588 at 666.522 kb on + strand, within Echvi_0588 at 666.744 kb on - strand, within Echvi_0588 at 666.744 kb on - strand, within Echvi_0588 at 666.776 kb on + strand, within Echvi_0588 at 666.816 kb on + strand, within Echvi_0588 at 666.861 kb on + strand, within Echvi_0588 at 666.861 kb on + strand, within Echvi_0588 at 666.895 kb on + strand, within Echvi_0588 at 666.919 kb on - strand, within Echvi_0588 at 667.017 kb on + strand at 667.060 kb on + strand at 667.060 kb on + strand at 667.060 kb on + strand at 667.060 kb on + strand at 667.061 kb on - strand at 667.061 kb on - strand at 667.061 kb on - strand at 667.074 kb on - strand at 667.107 kb on + strand at 667.112 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 663,824 + Echvi_0585 0.75 -0.5 663,825 - Echvi_0585 0.75 -1.0 663,935 + Echvi_0585 0.84 -2.0 663,935 + Echvi_0585 0.84 +0.6 663,935 + Echvi_0585 0.84 +0.2 663,946 + Echvi_0585 0.85 +0.3 663,946 + Echvi_0585 0.85 +0.8 663,947 - Echvi_0585 0.85 -0.8 663,947 - Echvi_0585 0.85 +2.0 663,965 - Echvi_0585 0.86 -1.1 663,971 + Echvi_0585 0.87 -2.1 664,014 - +2.6 664,014 - +2.0 664,019 + -1.3 664,019 + -2.3 664,019 + -1.0 664,020 - -0.6 664,021 + -1.6 664,021 + +0.1 664,022 - +1.2 664,024 + -0.4 664,024 + +0.0 664,024 + -1.0 664,024 + -1.1 664,025 - -0.6 664,025 - +0.9 664,029 - -1.8 664,038 - -0.1 664,038 - -1.4 664,040 + +0.4 664,075 - +0.6 664,093 + -0.5 664,095 + +0.9 664,095 + -0.5 664,096 - -2.4 664,134 + -0.5 664,135 - -0.3 664,163 - -2.7 664,172 + -0.4 664,176 + +0.1 664,176 + -2.7 664,176 + +1.7 664,177 - -1.8 664,177 - +0.4 664,177 - +0.2 664,177 - +1.0 664,177 - +2.6 664,178 + -0.8 664,196 - -0.7 664,196 - -1.9 664,196 - +0.9 664,199 + -2.0 664,199 + +2.7 664,200 - -0.1 664,203 - -0.2 664,203 - +0.2 664,219 - -1.0 664,287 + -0.0 664,289 + +0.0 664,289 + +0.3 664,290 - -0.3 664,301 + +2.0 664,328 + -1.9 664,380 + Echvi_0586 0.18 -2.6 664,384 - Echvi_0586 0.19 +0.7 664,461 + Echvi_0586 0.36 -0.2 664,509 - Echvi_0586 0.46 -1.3 664,545 + Echvi_0586 0.54 +1.0 664,545 + Echvi_0586 0.54 +0.4 664,711 - Echvi_0586 0.89 +0.7 664,711 - Echvi_0586 0.89 -0.5 664,713 - Echvi_0586 0.89 +0.1 664,757 + +0.5 664,758 - +0.4 664,758 - -1.2 664,819 + -0.8 664,819 + -0.2 664,824 + -0.1 664,824 + -0.7 664,860 + -1.9 664,888 + +0.6 664,901 + +0.9 664,901 + -0.2 664,902 - +0.2 665,021 - Echvi_0587 0.15 +1.4 665,021 - Echvi_0587 0.15 +0.4 665,080 + Echvi_0587 0.20 +0.4 665,190 + Echvi_0587 0.28 +0.4 665,506 + Echvi_0587 0.52 -0.6 665,545 + Echvi_0587 0.55 -0.0 665,550 + Echvi_0587 0.55 -1.4 665,551 - Echvi_0587 0.56 +0.1 665,568 + Echvi_0587 0.57 +0.7 665,568 + Echvi_0587 0.57 +0.2 665,569 - Echvi_0587 0.57 +1.6 665,680 + Echvi_0587 0.65 +0.4 665,732 + Echvi_0587 0.69 -1.0 665,734 + Echvi_0587 0.69 +0.4 665,734 + Echvi_0587 0.69 +0.5 665,735 - Echvi_0587 0.70 +1.5 665,735 - Echvi_0587 0.70 +0.2 665,741 - Echvi_0587 0.70 -0.8 665,822 + Echvi_0587 0.76 +0.3 665,823 - Echvi_0587 0.76 +0.6 665,823 - Echvi_0587 0.76 +0.8 665,839 + Echvi_0587 0.77 -0.4 665,839 + Echvi_0587 0.77 -0.6 665,840 - Echvi_0587 0.78 +1.2 665,841 + Echvi_0587 0.78 +1.7 665,841 + Echvi_0587 0.78 +2.2 665,841 + Echvi_0587 0.78 +0.2 665,841 + +0.0 665,843 + Echvi_0587 0.78 +1.1 665,843 + Echvi_0587 0.78 -0.0 665,843 + Echvi_0587 0.78 +0.4 665,843 + Echvi_0587 0.78 -0.6 665,844 - Echvi_0587 0.78 +1.1 665,844 - Echvi_0587 0.78 -1.7 665,844 - Echvi_0587 0.78 +0.4 665,908 - Echvi_0587 0.83 +0.6 665,919 + Echvi_0587 0.84 +1.5 665,920 - Echvi_0587 0.84 +1.0 665,920 - +0.4 665,963 + Echvi_0587 0.87 +0.1 665,964 - Echvi_0587 0.87 -0.1 665,964 - Echvi_0587 0.87 +0.4 666,026 + +0.4 666,061 + -0.8 666,128 - -0.6 666,284 + Echvi_0588 0.17 -0.2 666,284 + Echvi_0588 0.17 +0.9 666,343 + Echvi_0588 0.24 +0.7 666,344 - Echvi_0588 0.24 +0.6 666,349 - Echvi_0588 0.24 -1.0 666,355 - Echvi_0588 0.25 -0.4 666,429 + Echvi_0588 0.33 +2.3 666,429 + Echvi_0588 0.33 -1.4 666,429 + Echvi_0588 0.33 -0.7 666,449 - Echvi_0588 0.35 -1.6 666,468 + Echvi_0588 0.38 +0.8 666,469 - Echvi_0588 0.38 -0.5 666,522 + Echvi_0588 0.44 -0.9 666,744 - Echvi_0588 0.68 +0.6 666,744 - Echvi_0588 0.68 -0.8 666,776 + Echvi_0588 0.72 +1.3 666,816 + Echvi_0588 0.76 +0.5 666,861 + Echvi_0588 0.81 -1.3 666,861 + Echvi_0588 0.81 +1.2 666,895 + Echvi_0588 0.85 +0.6 666,919 - Echvi_0588 0.88 -1.1 667,017 + +0.5 667,060 + -0.0 667,060 + -2.1 667,060 + +0.3 667,060 + -0.5 667,061 - -0.5 667,061 - -1.5 667,061 - +1.0 667,074 - +2.7 667,107 + +0.0 667,112 + -1.8
Or see this region's nucleotide sequence