Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2316

Experiment: m.b. syringaldehyde 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2314 and B158DRAFT_2315 are separated by 105 nucleotidesB158DRAFT_2315 and B158DRAFT_2316 overlap by 1 nucleotidesB158DRAFT_2316 and B158DRAFT_2317 are separated by 28 nucleotides B158DRAFT_2314: B158DRAFT_2314 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 475,976 to 476,725 _2314 B158DRAFT_2315: B158DRAFT_2315 - proteobacterial dedicated sortase system response regulator, at 476,831 to 477,523 _2315 B158DRAFT_2316: B158DRAFT_2316 - Signal transduction histidine kinase, at 477,523 to 479,535 _2316 B158DRAFT_2317: B158DRAFT_2317 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 479,564 to 482,602 _2317 Position (kb) 477 478 479 480Strain fitness (log2 ratio) -7 -6 -5 -4 -3 -2 -1 0 1at 476.644 kb on - strand, within B158DRAFT_2314at 476.755 kb on - strandat 476.806 kb on - strandat 476.819 kb on + strandat 476.913 kb on + strand, within B158DRAFT_2315at 476.928 kb on - strand, within B158DRAFT_2315at 476.951 kb on + strand, within B158DRAFT_2315at 476.972 kb on + strand, within B158DRAFT_2315at 476.998 kb on + strand, within B158DRAFT_2315at 477.080 kb on + strand, within B158DRAFT_2315at 477.080 kb on + strand, within B158DRAFT_2315at 477.080 kb on + strand, within B158DRAFT_2315at 477.080 kb on + strand, within B158DRAFT_2315at 477.080 kb on + strand, within B158DRAFT_2315at 477.080 kb on + strand, within B158DRAFT_2315at 477.086 kb on + strand, within B158DRAFT_2315at 477.088 kb on - strand, within B158DRAFT_2315at 477.088 kb on - strand, within B158DRAFT_2315at 477.088 kb on - strand, within B158DRAFT_2315at 477.088 kb on - strand, within B158DRAFT_2315at 477.088 kb on - strand, within B158DRAFT_2315at 477.177 kb on - strand, within B158DRAFT_2315at 477.185 kb on - strand, within B158DRAFT_2315at 477.269 kb on + strand, within B158DRAFT_2315at 477.270 kb on + strand, within B158DRAFT_2315at 477.278 kb on - strand, within B158DRAFT_2315at 477.298 kb on - strand, within B158DRAFT_2315at 477.298 kb on - strand, within B158DRAFT_2315at 477.303 kb on + strand, within B158DRAFT_2315at 477.303 kb on + strand, within B158DRAFT_2315at 477.311 kb on - strand, within B158DRAFT_2315at 477.401 kb on + strand, within B158DRAFT_2315at 477.630 kb on + strandat 477.630 kb on - strandat 477.642 kb on + strandat 477.650 kb on + strandat 477.658 kb on - strandat 477.718 kb on - strandat 477.750 kb on + strand, within B158DRAFT_2316at 477.758 kb on - strand, within B158DRAFT_2316at 477.758 kb on - strand, within B158DRAFT_2316at 477.794 kb on + strand, within B158DRAFT_2316at 477.803 kb on + strand, within B158DRAFT_2316at 477.813 kb on + strand, within B158DRAFT_2316at 477.938 kb on + strand, within B158DRAFT_2316at 477.946 kb on - strand, within B158DRAFT_2316at 477.946 kb on - strand, within B158DRAFT_2316at 478.063 kb on - strand, within B158DRAFT_2316at 478.079 kb on - strand, within B158DRAFT_2316at 478.079 kb on - strand, within B158DRAFT_2316at 478.094 kb on + strand, within B158DRAFT_2316at 478.094 kb on + strand, within B158DRAFT_2316at 478.166 kb on + strand, within B158DRAFT_2316at 478.198 kb on + strand, within B158DRAFT_2316at 478.206 kb on - strand, within B158DRAFT_2316at 478.232 kb on + strand, within B158DRAFT_2316at 478.240 kb on - strand, within B158DRAFT_2316at 478.240 kb on - strand, within B158DRAFT_2316at 478.250 kb on - strand, within B158DRAFT_2316at 478.254 kb on + strand, within B158DRAFT_2316at 478.275 kb on + strand, within B158DRAFT_2316at 478.285 kb on + strand, within B158DRAFT_2316at 478.375 kb on + strand, within B158DRAFT_2316at 478.464 kb on - strand, within B158DRAFT_2316at 478.464 kb on - strand, within B158DRAFT_2316at 478.472 kb on + strand, within B158DRAFT_2316at 478.472 kb on + strand, within B158DRAFT_2316at 478.472 kb on + strand, within B158DRAFT_2316at 478.472 kb on + strand, within B158DRAFT_2316at 478.480 kb on - strand, within B158DRAFT_2316at 478.480 kb on - strand, within B158DRAFT_2316at 478.491 kb on + strand, within B158DRAFT_2316at 478.499 kb on + strand, within B158DRAFT_2316at 478.499 kb on - strand, within B158DRAFT_2316at 478.499 kb on - strand, within B158DRAFT_2316at 478.507 kb on - strand, within B158DRAFT_2316at 478.544 kb on + strand, within B158DRAFT_2316at 478.570 kb on + strand, within B158DRAFT_2316at 478.578 kb on + strand, within B158DRAFT_2316at 478.578 kb on + strand, within B158DRAFT_2316at 478.586 kb on - strand, within B158DRAFT_2316at 478.605 kb on + strand, within B158DRAFT_2316at 478.638 kb on + strand, within B158DRAFT_2316at 478.643 kb on + strand, within B158DRAFT_2316at 478.812 kb on - strand, within B158DRAFT_2316at 478.825 kb on + strand, within B158DRAFT_2316at 478.838 kb on + strand, within B158DRAFT_2316at 478.838 kb on + strand, within B158DRAFT_2316at 478.838 kb on + strand, within B158DRAFT_2316at 478.838 kb on + strand, within B158DRAFT_2316at 478.838 kb on + strand, within B158DRAFT_2316at 478.838 kb on + strand, within B158DRAFT_2316at 478.838 kb on + strand, within B158DRAFT_2316at 478.838 kb on + strand, within B158DRAFT_2316at 478.846 kb on - strand, within B158DRAFT_2316at 478.856 kb on - strand, within B158DRAFT_2316at 478.894 kb on - strand, within B158DRAFT_2316at 478.989 kb on + strand, within B158DRAFT_2316at 478.989 kb on + strand, within B158DRAFT_2316at 478.989 kb on + strand, within B158DRAFT_2316at 478.997 kb on - strand, within B158DRAFT_2316at 478.997 kb on - strand, within B158DRAFT_2316at 478.997 kb on - strand, within B158DRAFT_2316at 478.997 kb on - strand, within B158DRAFT_2316at 478.997 kb on - strand, within B158DRAFT_2316at 478.999 kb on + strand, within B158DRAFT_2316at 478.999 kb on + strand, within B158DRAFT_2316at 478.999 kb on + strand, within B158DRAFT_2316at 478.999 kb on + strand, within B158DRAFT_2316at 478.999 kb on + strand, within B158DRAFT_2316at 478.999 kb on + strand, within B158DRAFT_2316at 478.999 kb on + strand, within B158DRAFT_2316at 479.007 kb on - strand, within B158DRAFT_2316at 479.007 kb on - strand, within B158DRAFT_2316at 479.007 kb on - strand, within B158DRAFT_2316at 479.007 kb on - strand, within B158DRAFT_2316at 479.007 kb on - strand, within B158DRAFT_2316at 479.007 kb on - strand, within B158DRAFT_2316at 479.007 kb on - strand, within B158DRAFT_2316at 479.050 kb on - strand, within B158DRAFT_2316at 479.115 kb on + strand, within B158DRAFT_2316at 479.162 kb on + strand, within B158DRAFT_2316at 479.201 kb on - strand, within B158DRAFT_2316at 479.287 kb on + strand, within B158DRAFT_2316at 479.324 kb on + strand, within B158DRAFT_2316at 479.378 kb on - strandat 479.410 kb on - strandat 479.416 kb on - strandat 479.530 kb on + strandat 479.537 kb on - strandat 479.537 kb on - strandat 479.632 kb on + strandat 479.647 kb on + strandat 479.708 kb on + strandat 479.814 kb on - strandat 479.878 kb on - strand, within B158DRAFT_2317at 479.878 kb on - strand, within B158DRAFT_2317at 479.883 kb on - strand, within B158DRAFT_2317at 480.055 kb on + strand, within B158DRAFT_2317at 480.063 kb on - strand, within B158DRAFT_2317at 480.131 kb on - strand, within B158DRAFT_2317

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. syringaldehyde 1 mM
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476,644 - B158DRAFT_2314 0.89 -0.6
476,755 - -2.4
476,806 - -1.8
476,819 + -0.0
476,913 + B158DRAFT_2315 0.12 -2.4
476,928 - B158DRAFT_2315 0.14 -1.2
476,951 + B158DRAFT_2315 0.17 -2.4
476,972 + B158DRAFT_2315 0.20 -4.0
476,998 + B158DRAFT_2315 0.24 -3.1
477,080 + B158DRAFT_2315 0.36 -3.2
477,080 + B158DRAFT_2315 0.36 -3.1
477,080 + B158DRAFT_2315 0.36 -2.7
477,080 + B158DRAFT_2315 0.36 -3.3
477,080 + B158DRAFT_2315 0.36 -2.4
477,080 + B158DRAFT_2315 0.36 -1.7
477,086 + B158DRAFT_2315 0.37 -2.4
477,088 - B158DRAFT_2315 0.37 -3.5
477,088 - B158DRAFT_2315 0.37 -3.7
477,088 - B158DRAFT_2315 0.37 -1.2
477,088 - B158DRAFT_2315 0.37 -3.9
477,088 - B158DRAFT_2315 0.37 -3.5
477,177 - B158DRAFT_2315 0.50 -2.8
477,185 - B158DRAFT_2315 0.51 -0.1
477,269 + B158DRAFT_2315 0.63 -1.2
477,270 + B158DRAFT_2315 0.63 -2.8
477,278 - B158DRAFT_2315 0.65 -4.8
477,298 - B158DRAFT_2315 0.67 -3.1
477,298 - B158DRAFT_2315 0.67 -2.2
477,303 + B158DRAFT_2315 0.68 -0.1
477,303 + B158DRAFT_2315 0.68 -4.1
477,311 - B158DRAFT_2315 0.69 -3.4
477,401 + B158DRAFT_2315 0.82 -2.0
477,630 + -2.2
477,630 - -1.6
477,642 + -0.9
477,650 + -0.9
477,658 - -4.0
477,718 - -1.1
477,750 + B158DRAFT_2316 0.11 -4.1
477,758 - B158DRAFT_2316 0.12 -3.3
477,758 - B158DRAFT_2316 0.12 -3.7
477,794 + B158DRAFT_2316 0.13 -3.8
477,803 + B158DRAFT_2316 0.14 -1.1
477,813 + B158DRAFT_2316 0.14 -4.8
477,938 + B158DRAFT_2316 0.21 -3.2
477,946 - B158DRAFT_2316 0.21 -3.9
477,946 - B158DRAFT_2316 0.21 -0.8
478,063 - B158DRAFT_2316 0.27 -2.9
478,079 - B158DRAFT_2316 0.28 -2.6
478,079 - B158DRAFT_2316 0.28 -2.0
478,094 + B158DRAFT_2316 0.28 -2.9
478,094 + B158DRAFT_2316 0.28 -3.1
478,166 + B158DRAFT_2316 0.32 -3.5
478,198 + B158DRAFT_2316 0.34 -1.6
478,206 - B158DRAFT_2316 0.34 -3.6
478,232 + B158DRAFT_2316 0.35 -6.4
478,240 - B158DRAFT_2316 0.36 -1.4
478,240 - B158DRAFT_2316 0.36 -3.2
478,250 - B158DRAFT_2316 0.36 -1.6
478,254 + B158DRAFT_2316 0.36 -3.1
478,275 + B158DRAFT_2316 0.37 -5.7
478,285 + B158DRAFT_2316 0.38 -3.3
478,375 + B158DRAFT_2316 0.42 -2.9
478,464 - B158DRAFT_2316 0.47 -2.6
478,464 - B158DRAFT_2316 0.47 -3.6
478,472 + B158DRAFT_2316 0.47 -7.1
478,472 + B158DRAFT_2316 0.47 -1.2
478,472 + B158DRAFT_2316 0.47 -3.2
478,472 + B158DRAFT_2316 0.47 -3.2
478,480 - B158DRAFT_2316 0.48 -5.8
478,480 - B158DRAFT_2316 0.48 -1.5
478,491 + B158DRAFT_2316 0.48 -3.1
478,499 + B158DRAFT_2316 0.48 -1.1
478,499 - B158DRAFT_2316 0.48 -2.2
478,499 - B158DRAFT_2316 0.48 -3.2
478,507 - B158DRAFT_2316 0.49 -0.2
478,544 + B158DRAFT_2316 0.51 -0.1
478,570 + B158DRAFT_2316 0.52 -2.9
478,578 + B158DRAFT_2316 0.52 -2.1
478,578 + B158DRAFT_2316 0.52 -3.9
478,586 - B158DRAFT_2316 0.53 -3.1
478,605 + B158DRAFT_2316 0.54 -3.3
478,638 + B158DRAFT_2316 0.55 -1.9
478,643 + B158DRAFT_2316 0.56 -6.5
478,812 - B158DRAFT_2316 0.64 -1.9
478,825 + B158DRAFT_2316 0.65 -3.2
478,838 + B158DRAFT_2316 0.65 -3.8
478,838 + B158DRAFT_2316 0.65 -3.5
478,838 + B158DRAFT_2316 0.65 -3.6
478,838 + B158DRAFT_2316 0.65 -2.4
478,838 + B158DRAFT_2316 0.65 -1.9
478,838 + B158DRAFT_2316 0.65 -5.3
478,838 + B158DRAFT_2316 0.65 -3.3
478,838 + B158DRAFT_2316 0.65 -4.2
478,846 - B158DRAFT_2316 0.66 -3.5
478,856 - B158DRAFT_2316 0.66 -3.2
478,894 - B158DRAFT_2316 0.68 -2.0
478,989 + B158DRAFT_2316 0.73 -2.0
478,989 + B158DRAFT_2316 0.73 +0.2
478,989 + B158DRAFT_2316 0.73 -3.0
478,997 - B158DRAFT_2316 0.73 -3.3
478,997 - B158DRAFT_2316 0.73 -3.9
478,997 - B158DRAFT_2316 0.73 -3.2
478,997 - B158DRAFT_2316 0.73 -2.8
478,997 - B158DRAFT_2316 0.73 -2.9
478,999 + B158DRAFT_2316 0.73 -2.8
478,999 + B158DRAFT_2316 0.73 -3.6
478,999 + B158DRAFT_2316 0.73 -0.4
478,999 + B158DRAFT_2316 0.73 -1.1
478,999 + B158DRAFT_2316 0.73 -4.6
478,999 + B158DRAFT_2316 0.73 -2.8
478,999 + B158DRAFT_2316 0.73 -1.4
479,007 - B158DRAFT_2316 0.74 -3.3
479,007 - B158DRAFT_2316 0.74 -2.2
479,007 - B158DRAFT_2316 0.74 -1.4
479,007 - B158DRAFT_2316 0.74 -1.1
479,007 - B158DRAFT_2316 0.74 -3.7
479,007 - B158DRAFT_2316 0.74 -2.4
479,007 - B158DRAFT_2316 0.74 -0.4
479,050 - B158DRAFT_2316 0.76 -2.9
479,115 + B158DRAFT_2316 0.79 -2.6
479,162 + B158DRAFT_2316 0.81 -2.8
479,201 - B158DRAFT_2316 0.83 -3.3
479,287 + B158DRAFT_2316 0.88 -3.7
479,324 + B158DRAFT_2316 0.89 -2.6
479,378 - -2.6
479,410 - -2.7
479,416 - -0.1
479,530 + +0.2
479,537 - +0.4
479,537 - +0.2
479,632 + +0.4
479,647 + -0.1
479,708 + +0.2
479,814 - +0.1
479,878 - B158DRAFT_2317 0.10 -0.2
479,878 - B158DRAFT_2317 0.10 +0.5
479,883 - B158DRAFT_2317 0.10 +0.0
480,055 + B158DRAFT_2317 0.16 -0.2
480,063 - B158DRAFT_2317 0.16 +0.3
480,131 - B158DRAFT_2317 0.19 -0.4

Or see this region's nucleotide sequence