Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0998

Experiment: m.b. syringaldehyde 1 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_0997 and B158DRAFT_0998 are separated by 153 nucleotidesB158DRAFT_0998 and B158DRAFT_0999 are separated by 182 nucleotidesB158DRAFT_0999 and B158DRAFT_1000 are separated by 29 nucleotides B158DRAFT_0997: B158DRAFT_0997 - adhesin-associated MmpL efflux pump (from data), at 1,031,672 to 1,034,020 _0997 B158DRAFT_0998: B158DRAFT_0998 - NAD-specific glutamate dehydrogenase, at 1,034,174 to 1,039,012 _0998 B158DRAFT_0999: B158DRAFT_0999 - hypothetical protein, at 1,039,195 to 1,039,437 _0999 B158DRAFT_1000: B158DRAFT_1000 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 1,039,467 to 1,040,225 _1000 Position (kb) 1034 1035 1036 1037 1038 1039 1040Strain fitness (log2 ratio) -3 -2 -1 0 1at 1033.189 kb on - strand, within B158DRAFT_0997at 1033.194 kb on - strand, within B158DRAFT_0997at 1033.245 kb on - strand, within B158DRAFT_0997at 1033.245 kb on - strand, within B158DRAFT_0997at 1033.306 kb on + strand, within B158DRAFT_0997at 1033.306 kb on + strand, within B158DRAFT_0997at 1033.314 kb on - strand, within B158DRAFT_0997at 1033.316 kb on + strand, within B158DRAFT_0997at 1033.353 kb on - strand, within B158DRAFT_0997at 1033.355 kb on + strand, within B158DRAFT_0997at 1033.358 kb on + strand, within B158DRAFT_0997at 1033.358 kb on + strand, within B158DRAFT_0997at 1033.368 kb on - strand, within B158DRAFT_0997at 1033.408 kb on + strand, within B158DRAFT_0997at 1033.435 kb on + strand, within B158DRAFT_0997at 1033.435 kb on + strand, within B158DRAFT_0997at 1033.445 kb on + strand, within B158DRAFT_0997at 1033.577 kb on - strand, within B158DRAFT_0997at 1033.616 kb on + strand, within B158DRAFT_0997at 1033.618 kb on + strand, within B158DRAFT_0997at 1033.684 kb on - strand, within B158DRAFT_0997at 1033.697 kb on + strand, within B158DRAFT_0997at 1033.697 kb on + strand, within B158DRAFT_0997at 1033.697 kb on + strand, within B158DRAFT_0997at 1033.697 kb on + strand, within B158DRAFT_0997at 1033.697 kb on + strand, within B158DRAFT_0997at 1033.697 kb on + strand, within B158DRAFT_0997at 1033.705 kb on - strand, within B158DRAFT_0997at 1033.705 kb on - strand, within B158DRAFT_0997at 1033.705 kb on - strand, within B158DRAFT_0997at 1033.800 kb on + strandat 1033.804 kb on + strandat 1033.814 kb on - strandat 1033.873 kb on - strandat 1033.873 kb on - strandat 1033.910 kb on + strandat 1033.910 kb on + strandat 1033.910 kb on + strandat 1033.945 kb on - strandat 1033.963 kb on + strandat 1034.013 kb on - strandat 1036.150 kb on - strand, within B158DRAFT_0998at 1036.612 kb on - strand, within B158DRAFT_0998at 1038.509 kb on + strand, within B158DRAFT_0998at 1038.559 kb on + strandat 1038.577 kb on + strandat 1038.577 kb on + strandat 1038.941 kb on - strandat 1038.941 kb on - strandat 1039.073 kb on + strandat 1039.073 kb on + strandat 1039.216 kb on + strandat 1039.298 kb on - strand, within B158DRAFT_0999at 1039.336 kb on - strand, within B158DRAFT_0999at 1039.472 kb on - strandat 1039.543 kb on + strand, within B158DRAFT_1000at 1039.553 kb on + strand, within B158DRAFT_1000at 1039.554 kb on + strand, within B158DRAFT_1000at 1039.554 kb on + strand, within B158DRAFT_1000at 1039.554 kb on + strand, within B158DRAFT_1000at 1039.562 kb on - strand, within B158DRAFT_1000at 1039.562 kb on - strand, within B158DRAFT_1000at 1039.562 kb on - strand, within B158DRAFT_1000at 1039.579 kb on + strand, within B158DRAFT_1000at 1039.579 kb on + strand, within B158DRAFT_1000at 1039.579 kb on + strand, within B158DRAFT_1000at 1039.579 kb on + strand, within B158DRAFT_1000at 1039.579 kb on + strand, within B158DRAFT_1000at 1039.579 kb on + strand, within B158DRAFT_1000at 1039.579 kb on + strand, within B158DRAFT_1000at 1039.579 kb on + strand, within B158DRAFT_1000at 1039.579 kb on + strand, within B158DRAFT_1000at 1039.579 kb on + strand, within B158DRAFT_1000at 1039.579 kb on + strand, within B158DRAFT_1000at 1039.579 kb on + strand, within B158DRAFT_1000at 1039.579 kb on + strand, within B158DRAFT_1000at 1039.579 kb on + strand, within B158DRAFT_1000at 1039.587 kb on - strand, within B158DRAFT_1000at 1039.587 kb on - strand, within B158DRAFT_1000at 1039.587 kb on - strand, within B158DRAFT_1000at 1039.587 kb on - strand, within B158DRAFT_1000at 1039.587 kb on - strand, within B158DRAFT_1000at 1039.587 kb on - strand, within B158DRAFT_1000at 1039.587 kb on - strand, within B158DRAFT_1000at 1039.652 kb on + strand, within B158DRAFT_1000at 1039.652 kb on + strand, within B158DRAFT_1000at 1039.652 kb on + strand, within B158DRAFT_1000at 1039.660 kb on - strand, within B158DRAFT_1000at 1039.687 kb on - strand, within B158DRAFT_1000at 1039.691 kb on - strand, within B158DRAFT_1000at 1039.713 kb on - strand, within B158DRAFT_1000at 1039.752 kb on - strand, within B158DRAFT_1000at 1039.761 kb on + strand, within B158DRAFT_1000at 1039.774 kb on - strand, within B158DRAFT_1000at 1039.860 kb on + strand, within B158DRAFT_1000at 1039.868 kb on - strand, within B158DRAFT_1000at 1039.868 kb on - strand, within B158DRAFT_1000at 1039.868 kb on - strand, within B158DRAFT_1000at 1039.881 kb on - strand, within B158DRAFT_1000at 1039.928 kb on + strand, within B158DRAFT_1000at 1039.940 kb on + strand, within B158DRAFT_1000at 1039.949 kb on - strand, within B158DRAFT_1000

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. syringaldehyde 1 mM
remove
1,033,189 - B158DRAFT_0997 0.65 -0.1
1,033,194 - B158DRAFT_0997 0.65 -0.8
1,033,245 - B158DRAFT_0997 0.67 +0.2
1,033,245 - B158DRAFT_0997 0.67 +0.1
1,033,306 + B158DRAFT_0997 0.70 -0.6
1,033,306 + B158DRAFT_0997 0.70 -0.1
1,033,314 - B158DRAFT_0997 0.70 +0.4
1,033,316 + B158DRAFT_0997 0.70 -0.3
1,033,353 - B158DRAFT_0997 0.72 +0.1
1,033,355 + B158DRAFT_0997 0.72 -0.1
1,033,358 + B158DRAFT_0997 0.72 -0.1
1,033,358 + B158DRAFT_0997 0.72 -0.2
1,033,368 - B158DRAFT_0997 0.72 -0.4
1,033,408 + B158DRAFT_0997 0.74 -0.1
1,033,435 + B158DRAFT_0997 0.75 -0.6
1,033,435 + B158DRAFT_0997 0.75 -0.0
1,033,445 + B158DRAFT_0997 0.75 +0.5
1,033,577 - B158DRAFT_0997 0.81 +0.0
1,033,616 + B158DRAFT_0997 0.83 -0.6
1,033,618 + B158DRAFT_0997 0.83 -0.8
1,033,684 - B158DRAFT_0997 0.86 -0.0
1,033,697 + B158DRAFT_0997 0.86 +0.2
1,033,697 + B158DRAFT_0997 0.86 -0.1
1,033,697 + B158DRAFT_0997 0.86 -0.2
1,033,697 + B158DRAFT_0997 0.86 -0.2
1,033,697 + B158DRAFT_0997 0.86 +0.1
1,033,697 + B158DRAFT_0997 0.86 -0.0
1,033,705 - B158DRAFT_0997 0.87 -0.1
1,033,705 - B158DRAFT_0997 0.87 -0.1
1,033,705 - B158DRAFT_0997 0.87 +0.3
1,033,800 + +0.6
1,033,804 + +0.3
1,033,814 - -0.0
1,033,873 - -0.1
1,033,873 - -0.0
1,033,910 + +0.0
1,033,910 + -0.1
1,033,910 + +0.2
1,033,945 - +0.3
1,033,963 + +0.2
1,034,013 - +0.2
1,036,150 - B158DRAFT_0998 0.41 -2.4
1,036,612 - B158DRAFT_0998 0.50 -1.9
1,038,509 + B158DRAFT_0998 0.90 -2.9
1,038,559 + -1.0
1,038,577 + -0.8
1,038,577 + +0.3
1,038,941 - -2.2
1,038,941 - -1.7
1,039,073 + -0.3
1,039,073 + -0.1
1,039,216 + +0.1
1,039,298 - B158DRAFT_0999 0.42 -0.1
1,039,336 - B158DRAFT_0999 0.58 -0.1
1,039,472 - +0.1
1,039,543 + B158DRAFT_1000 0.10 -0.4
1,039,553 + B158DRAFT_1000 0.11 +0.3
1,039,554 + B158DRAFT_1000 0.11 -0.6
1,039,554 + B158DRAFT_1000 0.11 -0.7
1,039,554 + B158DRAFT_1000 0.11 -0.6
1,039,562 - B158DRAFT_1000 0.13 -1.0
1,039,562 - B158DRAFT_1000 0.13 -0.5
1,039,562 - B158DRAFT_1000 0.13 -0.6
1,039,579 + B158DRAFT_1000 0.15 -0.1
1,039,579 + B158DRAFT_1000 0.15 -0.4
1,039,579 + B158DRAFT_1000 0.15 -0.3
1,039,579 + B158DRAFT_1000 0.15 -0.3
1,039,579 + B158DRAFT_1000 0.15 -1.2
1,039,579 + B158DRAFT_1000 0.15 +0.2
1,039,579 + B158DRAFT_1000 0.15 -0.4
1,039,579 + B158DRAFT_1000 0.15 -0.4
1,039,579 + B158DRAFT_1000 0.15 +0.0
1,039,579 + B158DRAFT_1000 0.15 -0.5
1,039,579 + B158DRAFT_1000 0.15 +0.4
1,039,579 + B158DRAFT_1000 0.15 -0.2
1,039,579 + B158DRAFT_1000 0.15 +1.0
1,039,579 + B158DRAFT_1000 0.15 +0.2
1,039,587 - B158DRAFT_1000 0.16 -0.3
1,039,587 - B158DRAFT_1000 0.16 -0.2
1,039,587 - B158DRAFT_1000 0.16 -1.2
1,039,587 - B158DRAFT_1000 0.16 -1.5
1,039,587 - B158DRAFT_1000 0.16 -0.2
1,039,587 - B158DRAFT_1000 0.16 +0.4
1,039,587 - B158DRAFT_1000 0.16 -0.1
1,039,652 + B158DRAFT_1000 0.24 -0.1
1,039,652 + B158DRAFT_1000 0.24 -0.2
1,039,652 + B158DRAFT_1000 0.24 -0.2
1,039,660 - B158DRAFT_1000 0.25 -0.3
1,039,687 - B158DRAFT_1000 0.29 -0.5
1,039,691 - B158DRAFT_1000 0.30 -0.1
1,039,713 - B158DRAFT_1000 0.32 -0.6
1,039,752 - B158DRAFT_1000 0.38 -0.0
1,039,761 + B158DRAFT_1000 0.39 -0.5
1,039,774 - B158DRAFT_1000 0.40 -0.2
1,039,860 + B158DRAFT_1000 0.52 -0.4
1,039,868 - B158DRAFT_1000 0.53 -0.1
1,039,868 - B158DRAFT_1000 0.53 -0.3
1,039,868 - B158DRAFT_1000 0.53 -0.4
1,039,881 - B158DRAFT_1000 0.55 -0.1
1,039,928 + B158DRAFT_1000 0.61 +0.0
1,039,940 + B158DRAFT_1000 0.62 -0.3
1,039,949 - B158DRAFT_1000 0.64 -0.2

Or see this region's nucleotide sequence