Strain Fitness in Bosea sp. OAE506 around ABIE41_RS20510

Experiment: NP

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS20505 and ABIE41_RS20510 overlap by 4 nucleotidesABIE41_RS20510 and ABIE41_RS20515 are separated by 4 nucleotidesABIE41_RS20515 and ABIE41_RS20520 are separated by 102 nucleotides ABIE41_RS20505: ABIE41_RS20505 - ABC transporter ATP-binding protein, at 4,215,674 to 4,216,750 _RS20505 ABIE41_RS20510: ABIE41_RS20510 - sugar ABC transporter permease, at 4,216,747 to 4,217,637 _RS20510 ABIE41_RS20515: ABIE41_RS20515 - ABC transporter permease subunit, at 4,217,642 to 4,218,475 _RS20515 ABIE41_RS20520: ABIE41_RS20520 - extracellular solute-binding protein, at 4,218,578 to 4,219,768 _RS20520 Position (kb) 4216 4217 4218Strain fitness (log2 ratio) -2 -1 0 1 2at 4215.944 kb on + strand, within ABIE41_RS20505at 4215.944 kb on + strand, within ABIE41_RS20505at 4215.945 kb on - strand, within ABIE41_RS20505at 4215.945 kb on - strand, within ABIE41_RS20505at 4215.945 kb on - strand, within ABIE41_RS20505at 4215.945 kb on - strand, within ABIE41_RS20505at 4216.259 kb on + strand, within ABIE41_RS20505at 4216.260 kb on - strand, within ABIE41_RS20505at 4216.260 kb on - strand, within ABIE41_RS20505at 4216.260 kb on - strand, within ABIE41_RS20505at 4216.260 kb on - strand, within ABIE41_RS20505at 4216.260 kb on - strand, within ABIE41_RS20505at 4216.260 kb on - strand, within ABIE41_RS20505at 4216.653 kb on + strandat 4216.653 kb on + strandat 4216.653 kb on + strandat 4216.654 kb on - strandat 4216.861 kb on + strand, within ABIE41_RS20510at 4216.861 kb on + strand, within ABIE41_RS20510at 4216.861 kb on + strand, within ABIE41_RS20510at 4216.862 kb on - strand, within ABIE41_RS20510at 4216.862 kb on - strand, within ABIE41_RS20510at 4216.862 kb on - strand, within ABIE41_RS20510at 4216.891 kb on + strand, within ABIE41_RS20510at 4216.925 kb on - strand, within ABIE41_RS20510at 4216.925 kb on - strand, within ABIE41_RS20510at 4216.925 kb on - strand, within ABIE41_RS20510at 4216.954 kb on + strand, within ABIE41_RS20510at 4216.954 kb on + strand, within ABIE41_RS20510at 4217.088 kb on + strand, within ABIE41_RS20510at 4217.088 kb on + strand, within ABIE41_RS20510at 4217.212 kb on + strand, within ABIE41_RS20510at 4217.212 kb on + strand, within ABIE41_RS20510at 4217.213 kb on - strand, within ABIE41_RS20510at 4217.512 kb on + strand, within ABIE41_RS20510at 4217.513 kb on - strand, within ABIE41_RS20510at 4217.513 kb on - strand, within ABIE41_RS20510at 4217.518 kb on + strand, within ABIE41_RS20510at 4217.518 kb on + strand, within ABIE41_RS20510at 4217.605 kb on + strandat 4217.606 kb on - strandat 4217.606 kb on - strandat 4217.810 kb on + strand, within ABIE41_RS20515at 4217.810 kb on + strand, within ABIE41_RS20515at 4217.810 kb on + strand, within ABIE41_RS20515at 4217.810 kb on + strand, within ABIE41_RS20515at 4217.810 kb on + strand, within ABIE41_RS20515at 4217.810 kb on + strand, within ABIE41_RS20515at 4217.811 kb on - strand, within ABIE41_RS20515at 4217.813 kb on + strand, within ABIE41_RS20515at 4217.814 kb on - strand, within ABIE41_RS20515at 4217.814 kb on - strand, within ABIE41_RS20515at 4217.814 kb on - strand, within ABIE41_RS20515at 4217.847 kb on + strand, within ABIE41_RS20515at 4217.848 kb on - strand, within ABIE41_RS20515at 4217.918 kb on + strand, within ABIE41_RS20515at 4217.919 kb on - strand, within ABIE41_RS20515at 4217.919 kb on - strand, within ABIE41_RS20515at 4218.002 kb on + strand, within ABIE41_RS20515at 4218.002 kb on + strand, within ABIE41_RS20515at 4218.029 kb on + strand, within ABIE41_RS20515at 4218.029 kb on + strand, within ABIE41_RS20515at 4218.030 kb on - strand, within ABIE41_RS20515at 4218.030 kb on - strand, within ABIE41_RS20515at 4218.190 kb on + strand, within ABIE41_RS20515at 4218.326 kb on + strand, within ABIE41_RS20515at 4218.327 kb on - strand, within ABIE41_RS20515at 4218.327 kb on - strand, within ABIE41_RS20515at 4218.330 kb on - strand, within ABIE41_RS20515at 4218.330 kb on - strand, within ABIE41_RS20515at 4218.389 kb on + strand, within ABIE41_RS20515at 4218.389 kb on + strand, within ABIE41_RS20515at 4218.389 kb on + strand, within ABIE41_RS20515at 4218.390 kb on - strand, within ABIE41_RS20515at 4218.390 kb on - strand, within ABIE41_RS20515at 4218.390 kb on - strand, within ABIE41_RS20515at 4218.390 kb on - strand, within ABIE41_RS20515at 4218.390 kb on - strand, within ABIE41_RS20515at 4218.550 kb on + strandat 4218.550 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NP
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4,215,944 + ABIE41_RS20505 0.25 +0.4
4,215,944 + ABIE41_RS20505 0.25 +0.6
4,215,945 - ABIE41_RS20505 0.25 -0.1
4,215,945 - ABIE41_RS20505 0.25 +1.1
4,215,945 - ABIE41_RS20505 0.25 +0.1
4,215,945 - ABIE41_RS20505 0.25 +2.5
4,216,259 + ABIE41_RS20505 0.54 +1.5
4,216,260 - ABIE41_RS20505 0.54 -0.1
4,216,260 - ABIE41_RS20505 0.54 -0.2
4,216,260 - ABIE41_RS20505 0.54 -1.2
4,216,260 - ABIE41_RS20505 0.54 +0.4
4,216,260 - ABIE41_RS20505 0.54 -0.4
4,216,260 - ABIE41_RS20505 0.54 +0.7
4,216,653 + +0.3
4,216,653 + -0.0
4,216,653 + -0.2
4,216,654 - -0.4
4,216,861 + ABIE41_RS20510 0.13 -0.1
4,216,861 + ABIE41_RS20510 0.13 -0.0
4,216,861 + ABIE41_RS20510 0.13 +0.2
4,216,862 - ABIE41_RS20510 0.13 -0.2
4,216,862 - ABIE41_RS20510 0.13 -0.0
4,216,862 - ABIE41_RS20510 0.13 -0.1
4,216,891 + ABIE41_RS20510 0.16 -0.2
4,216,925 - ABIE41_RS20510 0.20 -1.0
4,216,925 - ABIE41_RS20510 0.20 +0.8
4,216,925 - ABIE41_RS20510 0.20 +0.6
4,216,954 + ABIE41_RS20510 0.23 +1.3
4,216,954 + ABIE41_RS20510 0.23 +0.2
4,217,088 + ABIE41_RS20510 0.38 -0.6
4,217,088 + ABIE41_RS20510 0.38 +0.3
4,217,212 + ABIE41_RS20510 0.52 +0.5
4,217,212 + ABIE41_RS20510 0.52 +0.7
4,217,213 - ABIE41_RS20510 0.52 -0.5
4,217,512 + ABIE41_RS20510 0.86 -0.1
4,217,513 - ABIE41_RS20510 0.86 -1.7
4,217,513 - ABIE41_RS20510 0.86 -0.0
4,217,518 + ABIE41_RS20510 0.87 -0.1
4,217,518 + ABIE41_RS20510 0.87 -1.1
4,217,605 + -0.2
4,217,606 - -0.5
4,217,606 - +1.7
4,217,810 + ABIE41_RS20515 0.20 +0.8
4,217,810 + ABIE41_RS20515 0.20 +0.7
4,217,810 + ABIE41_RS20515 0.20 -0.1
4,217,810 + ABIE41_RS20515 0.20 +0.7
4,217,810 + ABIE41_RS20515 0.20 +0.4
4,217,810 + ABIE41_RS20515 0.20 -0.1
4,217,811 - ABIE41_RS20515 0.20 -0.7
4,217,813 + ABIE41_RS20515 0.21 -2.0
4,217,814 - ABIE41_RS20515 0.21 -0.2
4,217,814 - ABIE41_RS20515 0.21 +1.1
4,217,814 - ABIE41_RS20515 0.21 +2.7
4,217,847 + ABIE41_RS20515 0.25 -0.6
4,217,848 - ABIE41_RS20515 0.25 -0.4
4,217,918 + ABIE41_RS20515 0.33 +2.1
4,217,919 - ABIE41_RS20515 0.33 -1.7
4,217,919 - ABIE41_RS20515 0.33 -2.1
4,218,002 + ABIE41_RS20515 0.43 +1.8
4,218,002 + ABIE41_RS20515 0.43 +0.1
4,218,029 + ABIE41_RS20515 0.46 -0.1
4,218,029 + ABIE41_RS20515 0.46 -0.4
4,218,030 - ABIE41_RS20515 0.47 +0.2
4,218,030 - ABIE41_RS20515 0.47 -0.0
4,218,190 + ABIE41_RS20515 0.66 +0.2
4,218,326 + ABIE41_RS20515 0.82 -1.6
4,218,327 - ABIE41_RS20515 0.82 -0.7
4,218,327 - ABIE41_RS20515 0.82 -0.9
4,218,330 - ABIE41_RS20515 0.82 -0.1
4,218,330 - ABIE41_RS20515 0.82 +0.3
4,218,389 + ABIE41_RS20515 0.90 +0.6
4,218,389 + ABIE41_RS20515 0.90 -0.7
4,218,389 + ABIE41_RS20515 0.90 -0.5
4,218,390 - ABIE41_RS20515 0.90 -0.2
4,218,390 - ABIE41_RS20515 0.90 +0.6
4,218,390 - ABIE41_RS20515 0.90 +0.0
4,218,390 - ABIE41_RS20515 0.90 -0.2
4,218,390 - ABIE41_RS20515 0.90 -0.5
4,218,550 + -0.0
4,218,550 + +0.1

Or see this region's nucleotide sequence