Experiment: NP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS18695 and ABIE41_RS18700 are separated by 226 nucleotides ABIE41_RS18700 and ABIE41_RS18705 are separated by 165 nucleotides ABIE41_RS18705 and ABIE41_RS18710 are separated by 47 nucleotides
ABIE41_RS18695: ABIE41_RS18695 - flagellar biosynthesis protein FlgA, at 3,848,853 to 3,850,256
_RS18695
ABIE41_RS18700: ABIE41_RS18700 - hypothetical protein, at 3,850,483 to 3,850,836
_RS18700
ABIE41_RS18705: ABIE41_RS18705 - amidohydrolase family protein, at 3,851,002 to 3,851,283
_RS18705
ABIE41_RS18710: ABIE41_RS18710 - TRAP transporter substrate-binding protein, at 3,851,331 to 3,852,338
_RS18710
Position (kb)
3851
3852 Strain fitness (log2 ratio)
-1
0
1
2 at 3850.237 kb on + strand at 3850.237 kb on + strand at 3850.238 kb on - strand at 3850.332 kb on + strand at 3850.332 kb on + strand at 3850.333 kb on - strand at 3850.348 kb on + strand at 3850.348 kb on + strand at 3850.348 kb on + strand at 3850.348 kb on + strand at 3850.348 kb on + strand at 3850.349 kb on - strand at 3850.349 kb on - strand at 3850.482 kb on + strand at 3850.482 kb on + strand at 3850.482 kb on + strand at 3850.482 kb on + strand at 3850.483 kb on - strand at 3850.528 kb on + strand, within ABIE41_RS18700 at 3850.528 kb on + strand, within ABIE41_RS18700 at 3851.037 kb on + strand, within ABIE41_RS18705 at 3851.037 kb on + strand, within ABIE41_RS18705 at 3851.038 kb on - strand, within ABIE41_RS18705 at 3851.226 kb on + strand, within ABIE41_RS18705 at 3851.226 kb on + strand, within ABIE41_RS18705 at 3851.226 kb on + strand, within ABIE41_RS18705 at 3851.227 kb on - strand, within ABIE41_RS18705 at 3851.272 kb on + strand at 3851.272 kb on + strand at 3851.272 kb on + strand at 3851.273 kb on - strand at 3851.273 kb on - strand at 3851.281 kb on + strand at 3851.281 kb on + strand at 3851.282 kb on - strand at 3851.282 kb on - strand at 3851.282 kb on - strand at 3851.472 kb on + strand, within ABIE41_RS18710 at 3851.473 kb on - strand, within ABIE41_RS18710 at 3851.473 kb on - strand, within ABIE41_RS18710 at 3851.473 kb on - strand, within ABIE41_RS18710 at 3851.674 kb on - strand, within ABIE41_RS18710 at 3851.788 kb on - strand, within ABIE41_RS18710 at 3851.826 kb on + strand, within ABIE41_RS18710 at 3851.826 kb on + strand, within ABIE41_RS18710 at 3851.826 kb on + strand, within ABIE41_RS18710 at 3851.827 kb on - strand, within ABIE41_RS18710 at 3851.827 kb on - strand, within ABIE41_RS18710 at 3852.013 kb on - strand, within ABIE41_RS18710 at 3852.013 kb on - strand, within ABIE41_RS18710 at 3852.013 kb on - strand, within ABIE41_RS18710 at 3852.116 kb on + strand, within ABIE41_RS18710
Per-strain Table
Position Strand Gene LocusTag Fraction NP remove 3,850,237 + -1.2 3,850,237 + +0.3 3,850,238 - +0.7 3,850,332 + -0.1 3,850,332 + -0.2 3,850,333 - +0.3 3,850,348 + -1.1 3,850,348 + +0.3 3,850,348 + -0.1 3,850,348 + -0.7 3,850,348 + -1.4 3,850,349 - +0.4 3,850,349 - -0.7 3,850,482 + +0.4 3,850,482 + -1.4 3,850,482 + -1.0 3,850,482 + +0.2 3,850,483 - +0.1 3,850,528 + ABIE41_RS18700 0.13 -1.4 3,850,528 + ABIE41_RS18700 0.13 +0.8 3,851,037 + ABIE41_RS18705 0.12 +0.2 3,851,037 + ABIE41_RS18705 0.12 +0.3 3,851,038 - ABIE41_RS18705 0.13 +0.2 3,851,226 + ABIE41_RS18705 0.79 +1.5 3,851,226 + ABIE41_RS18705 0.79 +0.5 3,851,226 + ABIE41_RS18705 0.79 +0.0 3,851,227 - ABIE41_RS18705 0.80 +0.1 3,851,272 + -0.6 3,851,272 + +0.0 3,851,272 + +0.1 3,851,273 - -0.6 3,851,273 - +0.0 3,851,281 + -0.0 3,851,281 + +0.1 3,851,282 - -0.5 3,851,282 - +0.2 3,851,282 - +0.2 3,851,472 + ABIE41_RS18710 0.14 +0.1 3,851,473 - ABIE41_RS18710 0.14 -0.3 3,851,473 - ABIE41_RS18710 0.14 -0.0 3,851,473 - ABIE41_RS18710 0.14 -0.1 3,851,674 - ABIE41_RS18710 0.34 +0.1 3,851,788 - ABIE41_RS18710 0.45 +2.3 3,851,826 + ABIE41_RS18710 0.49 +0.3 3,851,826 + ABIE41_RS18710 0.49 -1.0 3,851,826 + ABIE41_RS18710 0.49 -0.1 3,851,827 - ABIE41_RS18710 0.49 +0.0 3,851,827 - ABIE41_RS18710 0.49 -0.2 3,852,013 - ABIE41_RS18710 0.68 +2.7 3,852,013 - ABIE41_RS18710 0.68 -0.3 3,852,013 - ABIE41_RS18710 0.68 +0.8 3,852,116 + ABIE41_RS18710 0.78 -0.1
Or see this region's nucleotide sequence