Experiment: NP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS14660 and ABIE41_RS14665 are separated by 113 nucleotides ABIE41_RS14665 and ABIE41_RS14670 are separated by 88 nucleotides ABIE41_RS14670 and ABIE41_RS14675 are separated by 114 nucleotides ABIE41_RS14675 and ABIE41_RS14680 are separated by 173 nucleotides
ABIE41_RS14660: ABIE41_RS14660 - 30S ribosomal protein S13, at 3,001,127 to 3,001,495
_RS14660
ABIE41_RS14665: ABIE41_RS14665 - 30S ribosomal protein S11, at 3,001,609 to 3,001,998
_RS14665
ABIE41_RS14670: ABIE41_RS14670 - DNA-directed RNA polymerase subunit alpha, at 3,002,087 to 3,003,103
_RS14670
ABIE41_RS14675: ABIE41_RS14675 - 50S ribosomal protein L17, at 3,003,218 to 3,003,634
_RS14675
ABIE41_RS14680: ABIE41_RS14680 - tripartite tricarboxylate transporter substrate-binding protein, at 3,003,808 to 3,004,773
_RS14680
Position (kb) 3002
3003
3004 Strain fitness (log2 ratio) -1
0
1 at 3003.098 kb on + strand at 3003.749 kb on + strand at 3003.749 kb on + strand at 3003.750 kb on - strand at 3003.750 kb on - strand at 3004.069 kb on + strand, within ABIE41_RS14680 at 3004.070 kb on - strand, within ABIE41_RS14680
Per-strain Table
Position Strand Gene LocusTag Fraction NP remove 3,003,098 + -0.1 3,003,749 + -0.6 3,003,749 + -0.2 3,003,750 - -0.2 3,003,750 - -1.2 3,004,069 + ABIE41_RS14680 0.27 -0.4 3,004,070 - ABIE41_RS14680 0.27 +0.3
Or see this region's nucleotide sequence