Experiment: NP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS13135 and ABIE41_RS13140 overlap by 4 nucleotides ABIE41_RS13140 and ABIE41_RS13145 overlap by 4 nucleotides
ABIE41_RS13135: ABIE41_RS13135 - TRAP transporter substrate-binding protein, at 2,694,760 to 2,695,812
_RS13135
ABIE41_RS13140: ABIE41_RS13140 - TRAP transporter small permease, at 2,695,809 to 2,696,324
_RS13140
ABIE41_RS13145: ABIE41_RS13145 - TRAP transporter large permease, at 2,696,321 to 2,697,640
_RS13145
Position (kb)
2695
2696
2697 Strain fitness (log2 ratio)
-2
-1
0
1 at 2695.154 kb on - strand, within ABIE41_RS13135 at 2695.480 kb on + strand, within ABIE41_RS13135 at 2695.481 kb on - strand, within ABIE41_RS13135 at 2695.520 kb on - strand, within ABIE41_RS13135 at 2695.520 kb on - strand, within ABIE41_RS13135 at 2695.586 kb on + strand, within ABIE41_RS13135 at 2695.587 kb on - strand, within ABIE41_RS13135 at 2696.069 kb on + strand, within ABIE41_RS13140 at 2696.070 kb on - strand, within ABIE41_RS13140 at 2696.070 kb on - strand, within ABIE41_RS13140 at 2696.133 kb on + strand, within ABIE41_RS13140 at 2696.133 kb on + strand, within ABIE41_RS13140 at 2696.133 kb on + strand, within ABIE41_RS13140 at 2696.133 kb on + strand, within ABIE41_RS13140 at 2696.133 kb on + strand, within ABIE41_RS13140 at 2696.134 kb on - strand, within ABIE41_RS13140 at 2696.232 kb on + strand, within ABIE41_RS13140 at 2696.232 kb on + strand, within ABIE41_RS13140 at 2696.232 kb on + strand, within ABIE41_RS13140 at 2696.233 kb on - strand, within ABIE41_RS13140 at 2696.233 kb on - strand, within ABIE41_RS13140 at 2696.233 kb on - strand, within ABIE41_RS13140 at 2696.233 kb on - strand, within ABIE41_RS13140 at 2696.462 kb on + strand, within ABIE41_RS13145 at 2696.462 kb on + strand, within ABIE41_RS13145 at 2696.462 kb on + strand, within ABIE41_RS13145 at 2696.462 kb on + strand, within ABIE41_RS13145 at 2696.463 kb on - strand, within ABIE41_RS13145 at 2696.480 kb on + strand, within ABIE41_RS13145 at 2696.498 kb on + strand, within ABIE41_RS13145 at 2696.498 kb on + strand, within ABIE41_RS13145 at 2696.498 kb on + strand, within ABIE41_RS13145 at 2696.498 kb on + strand, within ABIE41_RS13145 at 2696.500 kb on + strand, within ABIE41_RS13145 at 2696.500 kb on + strand, within ABIE41_RS13145 at 2696.500 kb on + strand, within ABIE41_RS13145 at 2696.500 kb on + strand, within ABIE41_RS13145 at 2696.501 kb on - strand, within ABIE41_RS13145 at 2696.501 kb on - strand, within ABIE41_RS13145 at 2696.501 kb on - strand, within ABIE41_RS13145 at 2696.729 kb on + strand, within ABIE41_RS13145 at 2696.813 kb on + strand, within ABIE41_RS13145 at 2696.814 kb on - strand, within ABIE41_RS13145 at 2696.851 kb on + strand, within ABIE41_RS13145 at 2696.852 kb on - strand, within ABIE41_RS13145 at 2696.891 kb on + strand, within ABIE41_RS13145 at 2696.891 kb on + strand, within ABIE41_RS13145 at 2696.892 kb on - strand, within ABIE41_RS13145 at 2697.035 kb on + strand, within ABIE41_RS13145 at 2697.035 kb on + strand, within ABIE41_RS13145 at 2697.035 kb on + strand, within ABIE41_RS13145 at 2697.035 kb on + strand, within ABIE41_RS13145 at 2697.035 kb on + strand, within ABIE41_RS13145 at 2697.035 kb on + strand, within ABIE41_RS13145 at 2697.035 kb on + strand, within ABIE41_RS13145 at 2697.036 kb on - strand, within ABIE41_RS13145 at 2697.036 kb on - strand, within ABIE41_RS13145 at 2697.036 kb on - strand, within ABIE41_RS13145 at 2697.280 kb on + strand, within ABIE41_RS13145 at 2697.281 kb on - strand, within ABIE41_RS13145 at 2697.308 kb on + strand, within ABIE41_RS13145 at 2697.308 kb on + strand, within ABIE41_RS13145 at 2697.309 kb on - strand, within ABIE41_RS13145 at 2697.309 kb on - strand, within ABIE41_RS13145 at 2697.309 kb on - strand, within ABIE41_RS13145
Per-strain Table
Position Strand Gene LocusTag Fraction NP remove 2,695,154 - ABIE41_RS13135 0.37 -0.2 2,695,480 + ABIE41_RS13135 0.68 -0.7 2,695,481 - ABIE41_RS13135 0.68 -0.5 2,695,520 - ABIE41_RS13135 0.72 -0.1 2,695,520 - ABIE41_RS13135 0.72 +0.1 2,695,586 + ABIE41_RS13135 0.78 -1.0 2,695,587 - ABIE41_RS13135 0.79 -1.5 2,696,069 + ABIE41_RS13140 0.50 -1.2 2,696,070 - ABIE41_RS13140 0.51 -0.4 2,696,070 - ABIE41_RS13140 0.51 -0.9 2,696,133 + ABIE41_RS13140 0.63 -0.4 2,696,133 + ABIE41_RS13140 0.63 -0.5 2,696,133 + ABIE41_RS13140 0.63 -0.2 2,696,133 + ABIE41_RS13140 0.63 -1.2 2,696,133 + ABIE41_RS13140 0.63 -0.6 2,696,134 - ABIE41_RS13140 0.63 -1.0 2,696,232 + ABIE41_RS13140 0.82 +0.3 2,696,232 + ABIE41_RS13140 0.82 +0.7 2,696,232 + ABIE41_RS13140 0.82 +0.8 2,696,233 - ABIE41_RS13140 0.82 -0.5 2,696,233 - ABIE41_RS13140 0.82 -1.8 2,696,233 - ABIE41_RS13140 0.82 -0.5 2,696,233 - ABIE41_RS13140 0.82 -1.1 2,696,462 + ABIE41_RS13145 0.11 +0.2 2,696,462 + ABIE41_RS13145 0.11 -0.2 2,696,462 + ABIE41_RS13145 0.11 -0.2 2,696,462 + ABIE41_RS13145 0.11 +1.1 2,696,463 - ABIE41_RS13145 0.11 -0.4 2,696,480 + ABIE41_RS13145 0.12 -0.1 2,696,498 + ABIE41_RS13145 0.13 -0.5 2,696,498 + ABIE41_RS13145 0.13 -0.5 2,696,498 + ABIE41_RS13145 0.13 -1.1 2,696,498 + ABIE41_RS13145 0.13 -0.4 2,696,500 + ABIE41_RS13145 0.14 -0.8 2,696,500 + ABIE41_RS13145 0.14 -0.3 2,696,500 + ABIE41_RS13145 0.14 -0.4 2,696,500 + ABIE41_RS13145 0.14 -0.3 2,696,501 - ABIE41_RS13145 0.14 -0.0 2,696,501 - ABIE41_RS13145 0.14 -0.6 2,696,501 - ABIE41_RS13145 0.14 -0.6 2,696,729 + ABIE41_RS13145 0.31 -0.4 2,696,813 + ABIE41_RS13145 0.37 +0.4 2,696,814 - ABIE41_RS13145 0.37 -2.1 2,696,851 + ABIE41_RS13145 0.40 -0.2 2,696,852 - ABIE41_RS13145 0.40 -0.3 2,696,891 + ABIE41_RS13145 0.43 -0.1 2,696,891 + ABIE41_RS13145 0.43 -0.9 2,696,892 - ABIE41_RS13145 0.43 -0.3 2,697,035 + ABIE41_RS13145 0.54 -0.6 2,697,035 + ABIE41_RS13145 0.54 -0.7 2,697,035 + ABIE41_RS13145 0.54 -0.4 2,697,035 + ABIE41_RS13145 0.54 -0.1 2,697,035 + ABIE41_RS13145 0.54 -1.7 2,697,035 + ABIE41_RS13145 0.54 +0.2 2,697,035 + ABIE41_RS13145 0.54 -1.1 2,697,036 - ABIE41_RS13145 0.54 +0.2 2,697,036 - ABIE41_RS13145 0.54 -0.7 2,697,036 - ABIE41_RS13145 0.54 +0.2 2,697,280 + ABIE41_RS13145 0.73 -1.1 2,697,281 - ABIE41_RS13145 0.73 -0.7 2,697,308 + ABIE41_RS13145 0.75 -0.1 2,697,308 + ABIE41_RS13145 0.75 -0.3 2,697,309 - ABIE41_RS13145 0.75 -1.0 2,697,309 - ABIE41_RS13145 0.75 -0.1 2,697,309 - ABIE41_RS13145 0.75 -0.3
Or see this region's nucleotide sequence