Experiment: NP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS13120 and ABIE41_RS13125 are separated by 22 nucleotides ABIE41_RS13125 and ABIE41_RS13130 are separated by 199 nucleotides ABIE41_RS13130 and ABIE41_RS13135 are separated by 245 nucleotides
ABIE41_RS13120: ABIE41_RS13120 - YfhO family protein, at 2,690,973 to 2,693,426
_RS13120
ABIE41_RS13125: ABIE41_RS13125 - heme-binding protein, at 2,693,449 to 2,693,877
_RS13125
ABIE41_RS13130: ABIE41_RS13130 - peptidoglycan-binding protein LysM, at 2,694,077 to 2,694,514
_RS13130
ABIE41_RS13135: ABIE41_RS13135 - TRAP transporter substrate-binding protein, at 2,694,760 to 2,695,812
_RS13135
Position (kb)
2694
2695 Strain fitness (log2 ratio)
-1
0
1 at 2693.639 kb on + strand, within ABIE41_RS13125 at 2693.640 kb on - strand, within ABIE41_RS13125 at 2694.150 kb on + strand, within ABIE41_RS13130 at 2694.150 kb on + strand, within ABIE41_RS13130 at 2694.151 kb on - strand, within ABIE41_RS13130 at 2694.350 kb on + strand, within ABIE41_RS13130 at 2694.350 kb on + strand, within ABIE41_RS13130 at 2694.351 kb on - strand, within ABIE41_RS13130 at 2694.351 kb on - strand, within ABIE41_RS13130 at 2694.422 kb on + strand, within ABIE41_RS13130 at 2694.422 kb on + strand, within ABIE41_RS13130 at 2694.422 kb on + strand, within ABIE41_RS13130 at 2694.422 kb on + strand, within ABIE41_RS13130 at 2694.423 kb on - strand, within ABIE41_RS13130 at 2694.423 kb on - strand, within ABIE41_RS13130 at 2694.682 kb on - strand at 2694.686 kb on + strand at 2694.686 kb on + strand at 2694.687 kb on - strand at 2694.687 kb on - strand at 2694.802 kb on - strand at 2695.154 kb on - strand, within ABIE41_RS13135 at 2695.480 kb on + strand, within ABIE41_RS13135 at 2695.481 kb on - strand, within ABIE41_RS13135
Per-strain Table
Position Strand Gene LocusTag Fraction NP remove 2,693,639 + ABIE41_RS13125 0.44 +0.3 2,693,640 - ABIE41_RS13125 0.45 +0.3 2,694,150 + ABIE41_RS13130 0.17 -0.1 2,694,150 + ABIE41_RS13130 0.17 +0.3 2,694,151 - ABIE41_RS13130 0.17 -0.1 2,694,350 + ABIE41_RS13130 0.62 -0.6 2,694,350 + ABIE41_RS13130 0.62 -0.1 2,694,351 - ABIE41_RS13130 0.63 +0.6 2,694,351 - ABIE41_RS13130 0.63 -0.2 2,694,422 + ABIE41_RS13130 0.79 +0.7 2,694,422 + ABIE41_RS13130 0.79 -0.9 2,694,422 + ABIE41_RS13130 0.79 +0.3 2,694,422 + ABIE41_RS13130 0.79 -0.4 2,694,423 - ABIE41_RS13130 0.79 -0.5 2,694,423 - ABIE41_RS13130 0.79 -0.1 2,694,682 - -0.5 2,694,686 + +1.5 2,694,686 + +0.1 2,694,687 - -0.5 2,694,687 - -0.5 2,694,802 - -0.5 2,695,154 - ABIE41_RS13135 0.37 -0.2 2,695,480 + ABIE41_RS13135 0.68 -0.7 2,695,481 - ABIE41_RS13135 0.68 -0.5
Or see this region's nucleotide sequence