Experiment: NP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS11890 and ABIE41_RS11895 are separated by 99 nucleotides ABIE41_RS11895 and ABIE41_RS11900 overlap by 62 nucleotides ABIE41_RS11900 and ABIE41_RS11905 are separated by 97 nucleotides ABIE41_RS11905 and ABIE41_RS11910 are separated by 100 nucleotides
ABIE41_RS11890: ABIE41_RS11890 - mitochondrial fission ELM1 family protein, at 2,431,081 to 2,432,064
_RS11890
ABIE41_RS11895: ABIE41_RS11895 - Lrp/AsnC family transcriptional regulator, at 2,432,164 to 2,432,628
_RS11895
ABIE41_RS11900: ABIE41_RS11900 - GNAT family N-acetyltransferase, at 2,432,567 to 2,433,088
_RS11900
ABIE41_RS11905: ABIE41_RS11905 - transcription elongation factor GreA, at 2,433,186 to 2,433,662
_RS11905
ABIE41_RS11910: ABIE41_RS11910 - carbamoyl-phosphate synthase large subunit, at 2,433,763 to 2,437,125
_RS11910
Position (kb)
2432
2433
2434 Strain fitness (log2 ratio)
-1
0
1 at 2432.113 kb on - strand at 2432.132 kb on + strand at 2432.133 kb on - strand at 2432.687 kb on + strand, within ABIE41_RS11900 at 2432.688 kb on - strand, within ABIE41_RS11900 at 2432.898 kb on + strand, within ABIE41_RS11900 at 2432.898 kb on + strand, within ABIE41_RS11900 at 2432.898 kb on + strand, within ABIE41_RS11900 at 2432.899 kb on - strand, within ABIE41_RS11900 at 2432.967 kb on - strand, within ABIE41_RS11900 at 2433.018 kb on - strand, within ABIE41_RS11900 at 2433.018 kb on - strand, within ABIE41_RS11900 at 2433.127 kb on - strand at 2433.349 kb on + strand, within ABIE41_RS11905 at 2433.350 kb on - strand, within ABIE41_RS11905 at 2433.740 kb on - strand at 2433.740 kb on - strand at 2433.782 kb on + strand at 2433.782 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NP remove 2,432,113 - +0.9 2,432,132 + -1.7 2,432,133 - +0.0 2,432,687 + ABIE41_RS11900 0.23 +0.4 2,432,688 - ABIE41_RS11900 0.23 +0.8 2,432,898 + ABIE41_RS11900 0.63 -1.5 2,432,898 + ABIE41_RS11900 0.63 -0.1 2,432,898 + ABIE41_RS11900 0.63 +0.7 2,432,899 - ABIE41_RS11900 0.64 -0.0 2,432,967 - ABIE41_RS11900 0.77 -0.1 2,433,018 - ABIE41_RS11900 0.86 +0.2 2,433,018 - ABIE41_RS11900 0.86 +0.4 2,433,127 - +0.5 2,433,349 + ABIE41_RS11905 0.34 +0.7 2,433,350 - ABIE41_RS11905 0.34 +1.1 2,433,740 - -0.3 2,433,740 - +0.1 2,433,782 + -1.3 2,433,782 + +0.0
Or see this region's nucleotide sequence