Experiment: NP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS05220 and ABIE41_RS05225 are separated by 67 nucleotides ABIE41_RS05225 and ABIE41_RS05230 are separated by 126 nucleotides ABIE41_RS05230 and ABIE41_RS05235 are separated by 112 nucleotides
ABIE41_RS05220: ABIE41_RS05220 - ABC transporter ATP-binding protein, at 1,080,282 to 1,082,102
_RS05220
ABIE41_RS05225: ABIE41_RS05225 - phosphoribosyl-ATP diphosphatase, at 1,082,170 to 1,082,544
_RS05225
ABIE41_RS05230: ABIE41_RS05230 - tRNA-Arg, at 1,082,671 to 1,082,747
_RS05230
ABIE41_RS05235: ABIE41_RS05235 - LacI family DNA-binding transcriptional regulator, at 1,082,860 to 1,083,891
_RS05235
Position (kb)
1082
1083 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1082.371 kb on + strand, within ABIE41_RS05225 at 1082.371 kb on + strand, within ABIE41_RS05225 at 1082.371 kb on + strand, within ABIE41_RS05225 at 1082.372 kb on - strand, within ABIE41_RS05225 at 1082.453 kb on - strand, within ABIE41_RS05225 at 1082.453 kb on - strand, within ABIE41_RS05225 at 1082.760 kb on - strand at 1082.760 kb on - strand at 1082.958 kb on + strand at 1082.958 kb on + strand at 1082.958 kb on + strand at 1082.959 kb on - strand at 1082.959 kb on - strand at 1082.978 kb on + strand, within ABIE41_RS05235 at 1082.979 kb on - strand, within ABIE41_RS05235 at 1083.095 kb on + strand, within ABIE41_RS05235 at 1083.344 kb on - strand, within ABIE41_RS05235 at 1083.501 kb on - strand, within ABIE41_RS05235 at 1083.501 kb on - strand, within ABIE41_RS05235 at 1083.501 kb on - strand, within ABIE41_RS05235 at 1083.501 kb on - strand, within ABIE41_RS05235 at 1083.501 kb on - strand, within ABIE41_RS05235 at 1083.537 kb on - strand, within ABIE41_RS05235 at 1083.537 kb on - strand, within ABIE41_RS05235 at 1083.537 kb on - strand, within ABIE41_RS05235 at 1083.537 kb on - strand, within ABIE41_RS05235
Per-strain Table
Position Strand Gene LocusTag Fraction NP remove 1,082,371 + ABIE41_RS05225 0.54 +0.3 1,082,371 + ABIE41_RS05225 0.54 -1.5 1,082,371 + ABIE41_RS05225 0.54 -1.8 1,082,372 - ABIE41_RS05225 0.54 -0.5 1,082,453 - ABIE41_RS05225 0.75 +0.1 1,082,453 - ABIE41_RS05225 0.75 -2.0 1,082,760 - +0.1 1,082,760 - -0.1 1,082,958 + -0.1 1,082,958 + +1.0 1,082,958 + +0.1 1,082,959 - +0.1 1,082,959 - +2.2 1,082,978 + ABIE41_RS05235 0.11 +0.3 1,082,979 - ABIE41_RS05235 0.12 -0.4 1,083,095 + ABIE41_RS05235 0.23 -1.4 1,083,344 - ABIE41_RS05235 0.47 -0.7 1,083,501 - ABIE41_RS05235 0.62 +0.7 1,083,501 - ABIE41_RS05235 0.62 -0.6 1,083,501 - ABIE41_RS05235 0.62 -0.8 1,083,501 - ABIE41_RS05235 0.62 +0.1 1,083,501 - ABIE41_RS05235 0.62 -0.7 1,083,537 - ABIE41_RS05235 0.66 -0.0 1,083,537 - ABIE41_RS05235 0.66 -1.4 1,083,537 - ABIE41_RS05235 0.66 +0.1 1,083,537 - ABIE41_RS05235 0.66 +1.2
Or see this region's nucleotide sequence