Experiment: 4-Hydroxyphenylpropionic (C) 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_04622 and PFR28_04623 are separated by 63 nucleotides PFR28_04623 and PFR28_04624 are separated by 74 nucleotides PFR28_04624 and PFR28_04625 are separated by 371 nucleotides
PFR28_04622: PFR28_04622 - Homoserine kinase, at 5,277,357 to 5,278,307
_04622
PFR28_04623: PFR28_04623 - hypothetical protein, at 5,278,371 to 5,278,658
_04623
PFR28_04624: PFR28_04624 - DNA polymerase I, at 5,278,733 to 5,281,501
_04624
PFR28_04625: PFR28_04625 - putative GTP-binding protein EngB, at 5,281,873 to 5,282,514
_04625
Position (kb) 5278
5279
5280
5281
5282 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2
3
4
5 at 5278.312 kb on - strand at 5278.325 kb on - strand at 5278.465 kb on + strand, within PFR28_04623 at 5278.465 kb on + strand, within PFR28_04623 at 5278.465 kb on + strand, within PFR28_04623 at 5278.465 kb on + strand, within PFR28_04623 at 5278.466 kb on - strand, within PFR28_04623 at 5278.501 kb on + strand, within PFR28_04623 at 5278.501 kb on + strand, within PFR28_04623 at 5278.647 kb on + strand at 5278.647 kb on + strand at 5278.647 kb on + strand at 5278.647 kb on + strand at 5278.647 kb on + strand at 5278.648 kb on - strand at 5278.648 kb on - strand at 5278.648 kb on - strand at 5278.648 kb on - strand at 5278.652 kb on + strand at 5278.652 kb on + strand at 5278.652 kb on + strand at 5278.652 kb on + strand at 5278.652 kb on + strand at 5278.652 kb on + strand at 5278.652 kb on + strand at 5278.652 kb on + strand at 5278.652 kb on + strand at 5278.653 kb on - strand at 5278.653 kb on - strand at 5278.653 kb on - strand at 5278.653 kb on - strand at 5278.653 kb on - strand at 5278.653 kb on - strand at 5278.662 kb on - strand at 5278.662 kb on - strand at 5278.698 kb on + strand at 5278.698 kb on + strand at 5279.561 kb on + strand, within PFR28_04624 at 5279.561 kb on + strand, within PFR28_04624 at 5279.561 kb on + strand, within PFR28_04624 at 5279.561 kb on + strand, within PFR28_04624 at 5279.562 kb on - strand, within PFR28_04624 at 5279.562 kb on - strand, within PFR28_04624 at 5279.562 kb on - strand, within PFR28_04624 at 5279.563 kb on + strand, within PFR28_04624 at 5279.563 kb on + strand, within PFR28_04624 at 5279.563 kb on + strand, within PFR28_04624 at 5279.563 kb on + strand, within PFR28_04624 at 5279.563 kb on + strand, within PFR28_04624 at 5279.675 kb on + strand, within PFR28_04624 at 5279.675 kb on + strand, within PFR28_04624 at 5279.676 kb on - strand, within PFR28_04624 at 5279.676 kb on - strand, within PFR28_04624 at 5279.831 kb on + strand, within PFR28_04624 at 5279.852 kb on + strand, within PFR28_04624 at 5279.852 kb on + strand, within PFR28_04624 at 5279.852 kb on + strand, within PFR28_04624 at 5279.852 kb on + strand, within PFR28_04624 at 5279.852 kb on + strand, within PFR28_04624 at 5279.852 kb on + strand, within PFR28_04624 at 5279.852 kb on + strand, within PFR28_04624 at 5279.852 kb on + strand, within PFR28_04624 at 5279.852 kb on + strand, within PFR28_04624 at 5279.852 kb on + strand, within PFR28_04624 at 5279.853 kb on - strand, within PFR28_04624 at 5279.853 kb on - strand, within PFR28_04624 at 5279.853 kb on - strand, within PFR28_04624 at 5279.853 kb on - strand, within PFR28_04624 at 5279.853 kb on - strand, within PFR28_04624 at 5279.853 kb on - strand, within PFR28_04624 at 5279.853 kb on - strand, within PFR28_04624 at 5280.050 kb on + strand, within PFR28_04624 at 5280.050 kb on + strand, within PFR28_04624 at 5280.050 kb on + strand, within PFR28_04624 at 5280.050 kb on + strand, within PFR28_04624 at 5280.050 kb on + strand, within PFR28_04624 at 5280.050 kb on + strand, within PFR28_04624 at 5280.050 kb on + strand, within PFR28_04624 at 5280.050 kb on + strand, within PFR28_04624 at 5280.050 kb on + strand, within PFR28_04624 at 5280.050 kb on + strand, within PFR28_04624 at 5280.050 kb on + strand, within PFR28_04624 at 5280.050 kb on + strand, within PFR28_04624 at 5280.051 kb on - strand, within PFR28_04624 at 5280.051 kb on - strand, within PFR28_04624 at 5280.051 kb on - strand, within PFR28_04624 at 5280.105 kb on - strand, within PFR28_04624 at 5280.575 kb on + strand, within PFR28_04624 at 5280.613 kb on + strand, within PFR28_04624 at 5280.621 kb on + strand, within PFR28_04624 at 5280.621 kb on + strand, within PFR28_04624 at 5280.621 kb on + strand, within PFR28_04624 at 5280.621 kb on + strand, within PFR28_04624 at 5280.632 kb on + strand, within PFR28_04624 at 5280.632 kb on + strand, within PFR28_04624 at 5280.632 kb on + strand, within PFR28_04624 at 5280.632 kb on + strand, within PFR28_04624 at 5280.632 kb on + strand, within PFR28_04624 at 5280.632 kb on + strand, within PFR28_04624 at 5280.633 kb on - strand, within PFR28_04624 at 5280.633 kb on - strand, within PFR28_04624 at 5280.633 kb on - strand, within PFR28_04624 at 5280.682 kb on + strand, within PFR28_04624 at 5280.689 kb on + strand, within PFR28_04624 at 5280.689 kb on + strand, within PFR28_04624 at 5280.690 kb on - strand, within PFR28_04624 at 5280.690 kb on - strand, within PFR28_04624 at 5280.809 kb on + strand, within PFR28_04624 at 5280.809 kb on + strand, within PFR28_04624 at 5280.809 kb on + strand, within PFR28_04624 at 5280.810 kb on - strand, within PFR28_04624 at 5280.810 kb on - strand, within PFR28_04624 at 5280.810 kb on - strand, within PFR28_04624 at 5280.830 kb on + strand, within PFR28_04624 at 5280.831 kb on - strand, within PFR28_04624 at 5280.831 kb on - strand, within PFR28_04624 at 5281.073 kb on + strand, within PFR28_04624 at 5281.107 kb on + strand, within PFR28_04624 at 5281.107 kb on + strand, within PFR28_04624 at 5281.108 kb on - strand, within PFR28_04624 at 5281.115 kb on + strand, within PFR28_04624 at 5281.115 kb on + strand, within PFR28_04624 at 5281.184 kb on + strand, within PFR28_04624 at 5281.368 kb on + strand at 5281.368 kb on + strand at 5281.369 kb on - strand at 5281.449 kb on + strand at 5281.450 kb on - strand at 5281.450 kb on - strand at 5281.625 kb on + strand at 5281.625 kb on + strand at 5281.626 kb on - strand at 5281.677 kb on + strand at 5281.678 kb on - strand at 5281.699 kb on + strand at 5281.700 kb on - strand at 5281.716 kb on - strand at 5281.758 kb on + strand at 5281.758 kb on + strand at 5281.758 kb on + strand at 5281.758 kb on + strand at 5281.758 kb on + strand at 5281.758 kb on + strand at 5281.758 kb on + strand at 5281.758 kb on + strand at 5281.759 kb on - strand at 5281.759 kb on - strand at 5281.759 kb on - strand at 5281.759 kb on - strand at 5281.759 kb on - strand at 5281.759 kb on - strand at 5281.759 kb on - strand at 5281.759 kb on - strand at 5281.768 kb on + strand at 5281.768 kb on + strand at 5281.768 kb on + strand at 5281.769 kb on - strand at 5281.769 kb on - strand at 5281.769 kb on - strand at 5281.782 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxyphenylpropionic (C) 2.5 mM remove 5,278,312 - +1.1 5,278,325 - +0.8 5,278,465 + PFR28_04623 0.33 +1.0 5,278,465 + PFR28_04623 0.33 +0.7 5,278,465 + PFR28_04623 0.33 +0.5 5,278,465 + PFR28_04623 0.33 +0.4 5,278,466 - PFR28_04623 0.33 +2.4 5,278,501 + PFR28_04623 0.45 -0.6 5,278,501 + PFR28_04623 0.45 +0.3 5,278,647 + +2.0 5,278,647 + +0.4 5,278,647 + +2.1 5,278,647 + +0.9 5,278,647 + -2.2 5,278,648 - +1.8 5,278,648 - +2.5 5,278,648 - +1.7 5,278,648 - -3.2 5,278,652 + +4.9 5,278,652 + +1.7 5,278,652 + -3.5 5,278,652 + -2.5 5,278,652 + -1.0 5,278,652 + -0.7 5,278,652 + +2.5 5,278,652 + +1.7 5,278,652 + -2.1 5,278,653 - +2.1 5,278,653 - +0.1 5,278,653 - +4.8 5,278,653 - -2.2 5,278,653 - +1.5 5,278,653 - +2.7 5,278,662 - +0.8 5,278,662 - -0.2 5,278,698 + +2.6 5,278,698 + -0.9 5,279,561 + PFR28_04624 0.30 -0.2 5,279,561 + PFR28_04624 0.30 -0.5 5,279,561 + PFR28_04624 0.30 -1.1 5,279,561 + PFR28_04624 0.30 +0.8 5,279,562 - PFR28_04624 0.30 +0.5 5,279,562 - PFR28_04624 0.30 +2.1 5,279,562 - PFR28_04624 0.30 -1.5 5,279,563 + PFR28_04624 0.30 -1.2 5,279,563 + PFR28_04624 0.30 -2.3 5,279,563 + PFR28_04624 0.30 +1.2 5,279,563 + PFR28_04624 0.30 -0.7 5,279,563 + PFR28_04624 0.30 -0.9 5,279,675 + PFR28_04624 0.34 -1.1 5,279,675 + PFR28_04624 0.34 -1.5 5,279,676 - PFR28_04624 0.34 -3.6 5,279,676 - PFR28_04624 0.34 -3.5 5,279,831 + PFR28_04624 0.40 -1.7 5,279,852 + PFR28_04624 0.40 -2.8 5,279,852 + PFR28_04624 0.40 -2.7 5,279,852 + PFR28_04624 0.40 -3.2 5,279,852 + PFR28_04624 0.40 -2.6 5,279,852 + PFR28_04624 0.40 +0.1 5,279,852 + PFR28_04624 0.40 -1.5 5,279,852 + PFR28_04624 0.40 -1.8 5,279,852 + PFR28_04624 0.40 -1.3 5,279,852 + PFR28_04624 0.40 -1.2 5,279,852 + PFR28_04624 0.40 +0.1 5,279,853 - PFR28_04624 0.40 +1.1 5,279,853 - PFR28_04624 0.40 -1.2 5,279,853 - PFR28_04624 0.40 +1.1 5,279,853 - PFR28_04624 0.40 -2.2 5,279,853 - PFR28_04624 0.40 -2.1 5,279,853 - PFR28_04624 0.40 -1.4 5,279,853 - PFR28_04624 0.40 +0.1 5,280,050 + PFR28_04624 0.48 -1.8 5,280,050 + PFR28_04624 0.48 -2.5 5,280,050 + PFR28_04624 0.48 -3.3 5,280,050 + PFR28_04624 0.48 -2.2 5,280,050 + PFR28_04624 0.48 -0.7 5,280,050 + PFR28_04624 0.48 -2.9 5,280,050 + PFR28_04624 0.48 +1.0 5,280,050 + PFR28_04624 0.48 +0.6 5,280,050 + PFR28_04624 0.48 -0.2 5,280,050 + PFR28_04624 0.48 +1.0 5,280,050 + PFR28_04624 0.48 -0.8 5,280,050 + PFR28_04624 0.48 -1.6 5,280,051 - PFR28_04624 0.48 -2.9 5,280,051 - PFR28_04624 0.48 +0.5 5,280,051 - PFR28_04624 0.48 -2.7 5,280,105 - PFR28_04624 0.50 +1.1 5,280,575 + PFR28_04624 0.67 -3.2 5,280,613 + PFR28_04624 0.68 -1.5 5,280,621 + PFR28_04624 0.68 -0.9 5,280,621 + PFR28_04624 0.68 +1.1 5,280,621 + PFR28_04624 0.68 +1.1 5,280,621 + PFR28_04624 0.68 +4.3 5,280,632 + PFR28_04624 0.69 -3.2 5,280,632 + PFR28_04624 0.69 -2.6 5,280,632 + PFR28_04624 0.69 -3.0 5,280,632 + PFR28_04624 0.69 -2.4 5,280,632 + PFR28_04624 0.69 -0.3 5,280,632 + PFR28_04624 0.69 -2.3 5,280,633 - PFR28_04624 0.69 +1.8 5,280,633 - PFR28_04624 0.69 -0.5 5,280,633 - PFR28_04624 0.69 +2.6 5,280,682 + PFR28_04624 0.70 -2.0 5,280,689 + PFR28_04624 0.71 -2.1 5,280,689 + PFR28_04624 0.71 -2.3 5,280,690 - PFR28_04624 0.71 -1.3 5,280,690 - PFR28_04624 0.71 -0.5 5,280,809 + PFR28_04624 0.75 -1.5 5,280,809 + PFR28_04624 0.75 +1.4 5,280,809 + PFR28_04624 0.75 -2.1 5,280,810 - PFR28_04624 0.75 -0.7 5,280,810 - PFR28_04624 0.75 +2.0 5,280,810 - PFR28_04624 0.75 -1.2 5,280,830 + PFR28_04624 0.76 -0.9 5,280,831 - PFR28_04624 0.76 -1.1 5,280,831 - PFR28_04624 0.76 -2.5 5,281,073 + PFR28_04624 0.85 -1.5 5,281,107 + PFR28_04624 0.86 -1.2 5,281,107 + PFR28_04624 0.86 -2.3 5,281,108 - PFR28_04624 0.86 +2.1 5,281,115 + PFR28_04624 0.86 +0.1 5,281,115 + PFR28_04624 0.86 -1.2 5,281,184 + PFR28_04624 0.89 -1.9 5,281,368 + -0.2 5,281,368 + +2.1 5,281,369 - -2.0 5,281,449 + -2.9 5,281,450 - +2.2 5,281,450 - +2.3 5,281,625 + +1.6 5,281,625 + +1.0 5,281,626 - -0.5 5,281,677 + -0.3 5,281,678 - -0.6 5,281,699 + -0.1 5,281,700 - +2.1 5,281,716 - -0.7 5,281,758 + +1.5 5,281,758 + -4.4 5,281,758 + +0.5 5,281,758 + +0.5 5,281,758 + +0.6 5,281,758 + -0.7 5,281,758 + +1.1 5,281,758 + -3.9 5,281,759 - -2.0 5,281,759 - -3.3 5,281,759 - -1.8 5,281,759 - -7.5 5,281,759 - -2.6 5,281,759 - -2.8 5,281,759 - -2.7 5,281,759 - -1.8 5,281,768 + +1.1 5,281,768 + +1.3 5,281,768 + +1.5 5,281,769 - -2.5 5,281,769 - -1.4 5,281,769 - -6.4 5,281,782 + +0.3
Or see this region's nucleotide sequence