Strain Fitness in Pseudomonas sp. RS175 around PFR28_04266

Experiment: 4-Hydroxyphenylpropionic (C) 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxyphenylpropionic (C) 2.5 mM
4,867,389	+		PFR28_04264	0.84	+0.6
4,867,403	+		PFR28_04264	0.86	+0.5
4,867,403	+		PFR28_04264	0.86	-0.1
4,867,404	-		PFR28_04264	0.86	+1.6
4,867,404	-		PFR28_04264	0.86	-1.6
4,867,407	+		PFR28_04264	0.87	+3.7
4,867,407	+		PFR28_04264	0.87	-0.3
4,867,407	+		PFR28_04264	0.87	-2.5
4,867,407	+		PFR28_04264	0.87	-0.9
4,867,407	+		PFR28_04264	0.87	+0.7
4,867,407	+		PFR28_04264	0.87	-3.1
4,867,407	+		PFR28_04264	0.87	-0.5
4,867,407	+		PFR28_04264	0.87	+1.0
4,867,407	+		PFR28_04264	0.87	+1.1
4,867,407	+		PFR28_04264	0.87	+5.2
4,867,407	+		PFR28_04264	0.87	-3.4
4,867,407	+		PFR28_04264	0.87	+3.3
4,867,407	+		PFR28_04264	0.87	+1.2
4,867,407	+		PFR28_04264	0.87	+0.8
4,867,407	+		PFR28_04264	0.87	+1.8
4,867,407	+		PFR28_04264	0.87	-3.9
4,867,407	+		PFR28_04264	0.87	-3.8
4,867,407	+		PFR28_04264	0.87	-0.5
4,867,408	-		PFR28_04264	0.87	+2.1
4,867,408	-		PFR28_04264	0.87	-2.3
4,867,408	-		PFR28_04264	0.87	-3.1
4,867,408	-		PFR28_04264	0.87	+2.2
4,867,408	-		PFR28_04264	0.87	-1.1
4,867,408	-		PFR28_04264	0.87	+0.1
4,867,408	-		PFR28_04264	0.87	-1.4
4,867,408	-		PFR28_04264	0.87	+0.5
4,867,408	-		PFR28_04264	0.87	+0.1
4,867,408	-		PFR28_04264	0.87	-0.3
4,867,408	-		PFR28_04264	0.87	-2.3
4,867,408	-		PFR28_04264	0.87	-2.1
4,867,408	-		PFR28_04264	0.87	+2.4
4,867,419	-		PFR28_04264	0.88	-0.2
4,867,533	+				-0.9
4,867,533	+				-3.0
4,867,533	+				+0.9
4,867,533	+				-0.8
4,867,534	-				+0.8
4,867,534	-				+1.5
4,867,534	-				+0.0
4,867,559	-				+0.4
4,867,559	-				-1.7
4,867,559	-				-1.1
4,867,594	+				+2.2
4,867,594	+				-0.3
4,867,594	+				-2.6
4,867,594	+				+1.6
4,867,594	+				-2.5
4,867,594	+				+0.6
4,867,594	+				+0.9
4,867,594	+				+2.5
4,867,594	+				-1.4
4,867,594	+				+1.0
4,867,594	+				-1.9
4,867,594	+				+2.1
4,867,594	+				-0.5
4,867,595	-				+0.2
4,867,595	-				+0.8
4,867,595	-				+1.7
4,867,595	-				+1.4
4,867,595	-				-1.6
4,867,595	-				-4.7
4,867,595	-				-1.4
4,867,595	-				+0.3
4,867,595	-				-1.6
4,867,595	-				+1.4
4,867,595	-				-3.5
4,867,595	-				+1.5
4,867,595	-				+1.4
4,867,595	-				+1.2
4,867,595	-				-2.7
4,867,595	-				-0.5
4,867,595	-				+1.5
4,867,595	-				-0.3
4,867,595	-				-0.8
4,867,595	-				-2.7
4,867,595	-				-0.8
4,867,595	-				+0.5
4,867,595	-				+0.6
4,867,597	+				+5.1
4,867,597	+				-2.0
4,867,597	+				+2.8
4,867,598	-				-2.5
4,867,598	-				-1.4
4,867,598	-				-2.5
4,867,672	+		PFR28_04265	0.17	+1.6
4,867,672	+		PFR28_04265	0.17	-0.8
4,867,672	+		PFR28_04265	0.17	+0.1
4,867,672	+		PFR28_04265	0.17	-2.9
4,867,672	+		PFR28_04265	0.17	+1.2
4,867,672	+		PFR28_04265	0.17	+1.1
4,867,673	-		PFR28_04265	0.17	-3.0
4,867,834	+		PFR28_04265	0.41	+0.8
4,867,834	+		PFR28_04265	0.41	+1.0
4,867,834	+		PFR28_04265	0.41	-1.1
4,867,834	+		PFR28_04265	0.41	-2.2
4,867,834	+		PFR28_04265	0.41	-1.3
4,867,834	+		PFR28_04265	0.41	-0.8
4,867,834	+		PFR28_04265	0.41	+0.0
4,867,834	+		PFR28_04265	0.41	-0.8
4,867,834	+		PFR28_04265	0.41	+0.9
4,867,834	+		PFR28_04265	0.41	+1.3
4,867,834	+		PFR28_04265	0.41	+0.2
4,867,834	+		PFR28_04265	0.41	-2.8
4,867,834	+		PFR28_04265	0.41	-0.8
4,867,834	+		PFR28_04265	0.41	-2.0
4,867,835	-		PFR28_04265	0.41	+0.8
4,867,835	-		PFR28_04265	0.41	+0.4
4,867,835	-		PFR28_04265	0.41	+1.1
4,867,835	-		PFR28_04265	0.41	-2.5
4,867,835	-		PFR28_04265	0.41	+0.5
4,867,942	+		PFR28_04265	0.57	-1.4
4,867,942	+		PFR28_04265	0.57	+0.2
4,867,943	-		PFR28_04265	0.57	+0.2
4,867,975	+		PFR28_04265	0.62	+2.1
4,867,975	+		PFR28_04265	0.62	+0.8
4,867,975	+		PFR28_04265	0.62	-1.4
4,867,975	+		PFR28_04265	0.62	-2.9
4,867,976	-		PFR28_04265	0.62	+0.2
4,868,095	+		PFR28_04265	0.80	-0.5
4,868,095	+		PFR28_04265	0.80	-2.5
4,868,095	+		PFR28_04265	0.80	-0.1
4,868,096	-		PFR28_04265	0.80	-1.8
4,868,098	+		PFR28_04265	0.81	-1.1
4,868,098	+		PFR28_04265	0.81	-1.2
4,868,099	-		PFR28_04265	0.81	-0.3
4,868,099	-		PFR28_04265	0.81	+0.2
4,868,099	-		PFR28_04265	0.81	+0.9
4,868,099	-		PFR28_04265	0.81	+0.6
4,868,099	-		PFR28_04265	0.81	+1.2
4,868,099	-		PFR28_04265	0.81	+0.8
4,868,099	-		PFR28_04265	0.81	-2.4
4,868,135	+		PFR28_04265	0.86	+0.4
4,868,136	-		PFR28_04265	0.86	+0.0
4,868,240	+				+1.1
4,868,240	+				-1.0
4,868,240	+				-1.7
4,868,240	+				+1.7
4,868,240	+				-2.3
4,868,240	+				+0.3
4,868,241	-				+1.9
4,868,269	+				-3.3
4,868,269	+				-1.8
4,868,269	+				+1.2
4,868,269	+				-1.9
4,868,269	+				-3.5
4,868,269	+				-2.3
4,868,270	-				-3.2
4,868,270	-				+0.9
4,868,270	-				-3.3
4,868,270	-				-0.3
4,868,270	-				+0.5
4,868,270	-				-0.5
4,868,276	+				-0.4
4,868,276	+				+1.0
4,868,276	+				+0.1
4,868,276	+				-1.9
4,868,276	+				-0.2
4,868,276	+				-1.9
4,868,277	-				-1.3
4,868,277	-				-3.7
4,868,277	-				-0.9
4,868,277	-				+2.0
4,868,277	-				-2.2
4,868,333	+				-1.1
4,868,358	+				+0.5
4,868,358	+				+1.2
4,868,359	-				-0.2
4,868,361	+				+0.9
4,868,361	+				-0.1
4,868,361	+				+1.6
4,868,361	+				-0.3
4,868,361	+				+2.2
4,868,362	-				+0.8
4,868,362	-				+1.1
4,868,362	-				-1.9
4,868,362	-				+1.2
4,868,362	-				-3.4
4,868,362	-				-0.8
4,868,395	+				+1.1
4,868,395	+				+0.8
4,868,396	-				+3.2
4,868,396	-				+2.2
4,868,396	-				-0.1
4,868,396	-				+1.3
4,868,461	+				-3.1
4,868,462	-				+3.6
4,868,462	-				+0.7
4,868,462	-				+2.1
4,868,639	-		PFR28_04266	0.18	-1.9
4,868,687	+		PFR28_04266	0.22	+0.5
4,868,688	-		PFR28_04266	0.22	+0.8
4,868,688	-		PFR28_04266	0.22	-0.9
4,868,688	-		PFR28_04266	0.22	-3.8
4,868,688	-		PFR28_04266	0.22	+1.0
4,868,688	-		PFR28_04266	0.22	+1.3
4,868,725	+		PFR28_04266	0.24	-0.5
4,868,725	+		PFR28_04266	0.24	+2.3
4,868,725	+		PFR28_04266	0.24	-2.3
4,868,726	-		PFR28_04266	0.24	-0.8
4,868,889	+		PFR28_04266	0.36	-0.3
4,868,995	-		PFR28_04266	0.43	-3.4
4,869,115	-		PFR28_04266	0.52	-2.3
4,869,115	-		PFR28_04266	0.52	-2.7
4,869,115	-		PFR28_04266	0.52	+2.6
4,869,115	-		PFR28_04266	0.52	+0.4
4,869,116	+		PFR28_04266	0.52	-1.1
4,869,116	+		PFR28_04266	0.52	+0.6
4,869,116	+		PFR28_04266	0.52	-1.9
4,869,116	+		PFR28_04266	0.52	+1.2
4,869,116	+		PFR28_04266	0.52	+0.5
4,869,116	+		PFR28_04266	0.52	-0.1
4,869,116	+		PFR28_04266	0.52	-1.2
4,869,116	+		PFR28_04266	0.52	-1.9
4,869,117	-		PFR28_04266	0.52	+0.9
4,869,117	-		PFR28_04266	0.52	-1.8
4,869,117	-		PFR28_04266	0.52	+0.2
4,869,117	-		PFR28_04266	0.52	+0.4
4,869,117	-		PFR28_04266	0.52	-1.6
4,869,117	-		PFR28_04266	0.52	-0.9
4,869,117	-		PFR28_04266	0.52	-1.0
4,869,117	-		PFR28_04266	0.52	-3.5
4,869,117	-		PFR28_04266	0.52	+3.6
4,869,166	+		PFR28_04266	0.55	-0.0
4,869,166	+		PFR28_04266	0.55	+0.1
4,869,166	+		PFR28_04266	0.55	-1.4
4,869,166	+		PFR28_04266	0.55	-2.4
4,869,166	+		PFR28_04266	0.55	-1.6
4,869,166	+		PFR28_04266	0.55	-0.6
4,869,167	-		PFR28_04266	0.55	-0.8
4,869,167	-		PFR28_04266	0.55	+1.5
4,869,167	-		PFR28_04266	0.55	-0.5
4,869,167	-		PFR28_04266	0.55	+0.5
4,869,167	-		PFR28_04266	0.55	-0.8
4,869,167	-		PFR28_04266	0.55	+0.9
4,869,167	-		PFR28_04266	0.55	-1.4
4,869,167	-		PFR28_04266	0.55	+2.1
4,869,167	-		PFR28_04266	0.55	+1.1
4,869,167	-		PFR28_04266	0.55	+1.1
4,869,167	-		PFR28_04266	0.55	+1.0
4,869,170	+		PFR28_04266	0.55	-2.9
4,869,170	+		PFR28_04266	0.55	+3.2
4,869,170	+		PFR28_04266	0.55	-1.9
4,869,170	+		PFR28_04266	0.55	-0.3
4,869,171	-		PFR28_04266	0.55	-0.9
4,869,171	-		PFR28_04266	0.55	+0.4
4,869,171	-		PFR28_04266	0.55	+0.1
4,869,171	-		PFR28_04266	0.55	+2.7
4,869,171	-		PFR28_04266	0.55	+1.5
4,869,171	-		PFR28_04266	0.55	+3.4
4,869,171	-		PFR28_04266	0.55	-1.1
4,869,235	+		PFR28_04266	0.60	+2.8
4,869,235	+		PFR28_04266	0.60	+1.1
4,869,262	+		PFR28_04266	0.62	-2.3
4,869,262	+		PFR28_04266	0.62	-0.2
4,869,263	-		PFR28_04266	0.62	+0.5
4,869,263	-		PFR28_04266	0.62	+0.5
4,869,307	+		PFR28_04266	0.65	-2.5
4,869,308	-		PFR28_04266	0.65	-4.1
4,869,308	-		PFR28_04266	0.65	+1.9
4,869,384	+		PFR28_04266	0.70	-0.9
4,869,384	+		PFR28_04266	0.70	-3.9
4,869,463	+		PFR28_04266	0.76	-1.8
4,869,464	-		PFR28_04266	0.76	-0.1
4,869,464	-		PFR28_04266	0.76	+0.1
4,869,490	+		PFR28_04266	0.78	+1.1
4,869,490	+		PFR28_04266	0.78	-0.4
4,869,490	+		PFR28_04266	0.78	+1.5
4,869,490	+		PFR28_04266	0.78	-1.4
4,869,491	-		PFR28_04266	0.78	-0.9
4,869,491	-		PFR28_04266	0.78	-3.2
4,869,524	-		PFR28_04266	0.80	-2.3
4,869,526	+		PFR28_04266	0.80	-2.9
4,869,527	-		PFR28_04266	0.80	-0.0
4,869,667	+				-1.3
4,869,668	-				+2.3
4,869,751	+				-1.1
4,869,751	+				+1.5
4,869,751	+				-2.9
4,869,824	-				+0.7
4,869,854	+				-1.4
4,869,855	-				-1.9
4,870,148	+		PFR28_04267	0.59	-1.8
4,870,148	+		PFR28_04267	0.59	+1.4
4,870,148	+		PFR28_04267	0.59	+0.8
4,870,149	-		PFR28_04267	0.59	+0.9
4,870,149	-		PFR28_04267	0.59	-1.6
4,870,149	-		PFR28_04267	0.59	+0.9
4,870,485	+				-0.1
4,870,485	+				+0.9
4,870,485	+				-0.1
4,870,485	+				+2.2
4,870,486	-				-2.9
4,870,486	-				-0.4
4,870,486	-				+1.9
4,870,486	-				+1.3
4,870,486	-				-1.1
4,870,486	-				-0.2
4,870,593	+				-1.2
4,870,593	+				-0.3
4,870,594	-		PFR28_04268	0.10	+0.5
4,870,666	-		PFR28_04268	0.15	+0.2
4,870,666	-		PFR28_04268	0.15	-1.0
4,870,666	-		PFR28_04268	0.15	-0.3
4,870,666	-		PFR28_04268	0.15	+1.2
4,870,678	-		PFR28_04268	0.15	-3.4
4,870,678	-		PFR28_04268	0.15	+1.3