Strain Fitness in Pseudomonas sp. RS175 around PFR28_04251

Experiment: 4-Hydroxyphenylpropionic (C) 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_04249 and PFR28_04250 are separated by 18 nucleotidesPFR28_04250 and PFR28_04251 are separated by 139 nucleotidesPFR28_04251 and PFR28_04252 are separated by 9 nucleotidesPFR28_04252 and PFR28_04253 are separated by 90 nucleotides PFR28_04249: PFR28_04249 - Heme chaperone HemW, at 4,852,757 to 4,853,956 _04249 PFR28_04250: PFR28_04250 - hypothetical protein, at 4,853,975 to 4,854,298 _04250 PFR28_04251: PFR28_04251 - tRNA (guanine-N(7)-)-methyltransferase, at 4,854,438 to 4,855,163 _04251 PFR28_04252: PFR28_04252 - Thiazole synthase, at 4,855,173 to 4,855,967 _04252 PFR28_04253: PFR28_04253 - hypothetical protein, at 4,856,058 to 4,856,273 _04253 Position (kb) 4854 4855 4856Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4853.461 kb on + strand, within PFR28_04249at 4853.514 kb on - strand, within PFR28_04249at 4853.514 kb on - strand, within PFR28_04249at 4853.523 kb on - strand, within PFR28_04249at 4853.537 kb on + strand, within PFR28_04249at 4853.577 kb on - strand, within PFR28_04249at 4853.577 kb on - strand, within PFR28_04249at 4853.577 kb on - strand, within PFR28_04249at 4853.685 kb on - strand, within PFR28_04249at 4853.685 kb on - strand, within PFR28_04249at 4853.985 kb on + strandat 4854.054 kb on + strand, within PFR28_04250at 4854.055 kb on - strand, within PFR28_04250at 4854.055 kb on - strand, within PFR28_04250at 4854.055 kb on - strand, within PFR28_04250at 4854.188 kb on + strand, within PFR28_04250at 4854.188 kb on + strand, within PFR28_04250at 4854.188 kb on + strand, within PFR28_04250at 4854.188 kb on + strand, within PFR28_04250at 4854.188 kb on + strand, within PFR28_04250at 4854.188 kb on + strand, within PFR28_04250at 4854.188 kb on + strand, within PFR28_04250at 4854.188 kb on + strand, within PFR28_04250at 4854.188 kb on + strand, within PFR28_04250at 4854.189 kb on - strand, within PFR28_04250at 4854.189 kb on - strand, within PFR28_04250at 4854.189 kb on - strand, within PFR28_04250at 4854.189 kb on - strand, within PFR28_04250at 4854.189 kb on - strand, within PFR28_04250at 4854.233 kb on + strand, within PFR28_04250at 4854.233 kb on + strand, within PFR28_04250at 4854.233 kb on + strand, within PFR28_04250at 4854.233 kb on + strand, within PFR28_04250at 4854.233 kb on + strand, within PFR28_04250at 4854.233 kb on + strand, within PFR28_04250at 4854.234 kb on - strand, within PFR28_04250at 4854.234 kb on - strand, within PFR28_04250at 4854.234 kb on - strand, within PFR28_04250at 4854.234 kb on - strand, within PFR28_04250at 4854.234 kb on - strand, within PFR28_04250at 4854.234 kb on - strand, within PFR28_04250at 4854.234 kb on - strand, within PFR28_04250at 4854.252 kb on + strand, within PFR28_04250at 4854.252 kb on + strand, within PFR28_04250at 4854.253 kb on - strand, within PFR28_04250at 4854.261 kb on + strand, within PFR28_04250at 4854.261 kb on + strand, within PFR28_04250at 4854.262 kb on - strand, within PFR28_04250at 4854.274 kb on - strandat 4854.279 kb on + strandat 4854.279 kb on + strandat 4854.538 kb on + strand, within PFR28_04251at 4854.538 kb on + strand, within PFR28_04251at 4854.538 kb on + strand, within PFR28_04251at 4854.539 kb on - strand, within PFR28_04251at 4854.539 kb on - strand, within PFR28_04251at 4854.539 kb on - strand, within PFR28_04251at 4854.561 kb on - strand, within PFR28_04251at 4854.598 kb on + strand, within PFR28_04251at 4854.598 kb on + strand, within PFR28_04251at 4854.598 kb on + strand, within PFR28_04251at 4854.598 kb on + strand, within PFR28_04251at 4854.598 kb on + strand, within PFR28_04251at 4854.599 kb on - strand, within PFR28_04251at 4854.599 kb on - strand, within PFR28_04251at 4854.599 kb on - strand, within PFR28_04251at 4854.599 kb on - strand, within PFR28_04251at 4854.599 kb on - strand, within PFR28_04251at 4854.599 kb on - strand, within PFR28_04251at 4854.608 kb on - strand, within PFR28_04251at 4854.805 kb on + strand, within PFR28_04251at 4854.805 kb on + strand, within PFR28_04251at 4854.805 kb on + strand, within PFR28_04251at 4854.805 kb on + strand, within PFR28_04251at 4854.806 kb on - strand, within PFR28_04251at 4855.101 kb on - strandat 4855.174 kb on + strandat 4855.174 kb on + strandat 4855.174 kb on + strandat 4855.174 kb on + strandat 4855.174 kb on + strandat 4855.174 kb on + strandat 4855.174 kb on + strandat 4855.174 kb on + strandat 4855.175 kb on - strandat 4855.175 kb on - strandat 4855.175 kb on - strandat 4855.175 kb on - strandat 4855.175 kb on - strandat 4855.175 kb on - strandat 4855.175 kb on - strandat 4855.214 kb on - strandat 4855.243 kb on + strandat 4855.244 kb on - strandat 4855.244 kb on - strandat 4855.441 kb on + strand, within PFR28_04252at 4855.441 kb on + strand, within PFR28_04252at 4855.441 kb on + strand, within PFR28_04252at 4855.441 kb on + strand, within PFR28_04252at 4855.441 kb on + strand, within PFR28_04252at 4855.441 kb on + strand, within PFR28_04252at 4855.441 kb on + strand, within PFR28_04252at 4855.441 kb on + strand, within PFR28_04252at 4855.442 kb on - strand, within PFR28_04252at 4855.442 kb on - strand, within PFR28_04252at 4855.442 kb on - strand, within PFR28_04252at 4855.442 kb on - strand, within PFR28_04252at 4855.442 kb on - strand, within PFR28_04252at 4855.442 kb on - strand, within PFR28_04252at 4855.442 kb on - strand, within PFR28_04252at 4855.549 kb on + strand, within PFR28_04252at 4855.549 kb on + strand, within PFR28_04252at 4855.549 kb on + strand, within PFR28_04252at 4855.550 kb on - strand, within PFR28_04252at 4855.550 kb on - strand, within PFR28_04252at 4855.550 kb on - strand, within PFR28_04252at 4855.550 kb on - strand, within PFR28_04252at 4855.751 kb on - strand, within PFR28_04252at 4855.751 kb on - strand, within PFR28_04252at 4855.885 kb on + strand, within PFR28_04252at 4855.918 kb on + strandat 4855.919 kb on - strandat 4855.919 kb on - strandat 4855.919 kb on - strandat 4855.922 kb on + strandat 4855.922 kb on + strandat 4855.923 kb on - strandat 4856.142 kb on - strand, within PFR28_04253

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Per-strain Table

Position Strand Gene LocusTag Fraction 4-Hydroxyphenylpropionic (C) 2.5 mM
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4,853,461 + PFR28_04249 0.59 +0.0
4,853,514 - PFR28_04249 0.63 -3.3
4,853,514 - PFR28_04249 0.63 -1.1
4,853,523 - PFR28_04249 0.64 -3.8
4,853,537 + PFR28_04249 0.65 -3.0
4,853,577 - PFR28_04249 0.68 -0.3
4,853,577 - PFR28_04249 0.68 -1.8
4,853,577 - PFR28_04249 0.68 +0.3
4,853,685 - PFR28_04249 0.77 +0.8
4,853,685 - PFR28_04249 0.77 +1.8
4,853,985 + +1.8
4,854,054 + PFR28_04250 0.24 +1.4
4,854,055 - PFR28_04250 0.25 +1.0
4,854,055 - PFR28_04250 0.25 +0.9
4,854,055 - PFR28_04250 0.25 -3.1
4,854,188 + PFR28_04250 0.66 +0.7
4,854,188 + PFR28_04250 0.66 +0.1
4,854,188 + PFR28_04250 0.66 -1.4
4,854,188 + PFR28_04250 0.66 -1.5
4,854,188 + PFR28_04250 0.66 +0.3
4,854,188 + PFR28_04250 0.66 +2.0
4,854,188 + PFR28_04250 0.66 +1.9
4,854,188 + PFR28_04250 0.66 -0.1
4,854,188 + PFR28_04250 0.66 -2.0
4,854,189 - PFR28_04250 0.66 +2.0
4,854,189 - PFR28_04250 0.66 +0.5
4,854,189 - PFR28_04250 0.66 +2.0
4,854,189 - PFR28_04250 0.66 +1.0
4,854,189 - PFR28_04250 0.66 +1.2
4,854,233 + PFR28_04250 0.80 -3.0
4,854,233 + PFR28_04250 0.80 -0.9
4,854,233 + PFR28_04250 0.80 -0.8
4,854,233 + PFR28_04250 0.80 -1.3
4,854,233 + PFR28_04250 0.80 +0.0
4,854,233 + PFR28_04250 0.80 -2.1
4,854,234 - PFR28_04250 0.80 +0.5
4,854,234 - PFR28_04250 0.80 +2.1
4,854,234 - PFR28_04250 0.80 -1.0
4,854,234 - PFR28_04250 0.80 -3.6
4,854,234 - PFR28_04250 0.80 +0.3
4,854,234 - PFR28_04250 0.80 +1.0
4,854,234 - PFR28_04250 0.80 +1.8
4,854,252 + PFR28_04250 0.85 +1.9
4,854,252 + PFR28_04250 0.85 -1.8
4,854,253 - PFR28_04250 0.86 -0.1
4,854,261 + PFR28_04250 0.88 +0.2
4,854,261 + PFR28_04250 0.88 +1.2
4,854,262 - PFR28_04250 0.89 +1.6
4,854,274 - +2.6
4,854,279 + +0.3
4,854,279 + -4.0
4,854,538 + PFR28_04251 0.14 +1.8
4,854,538 + PFR28_04251 0.14 -1.9
4,854,538 + PFR28_04251 0.14 +1.4
4,854,539 - PFR28_04251 0.14 +1.7
4,854,539 - PFR28_04251 0.14 +2.0
4,854,539 - PFR28_04251 0.14 +2.3
4,854,561 - PFR28_04251 0.17 +1.0
4,854,598 + PFR28_04251 0.22 -3.2
4,854,598 + PFR28_04251 0.22 -1.5
4,854,598 + PFR28_04251 0.22 +1.0
4,854,598 + PFR28_04251 0.22 -0.8
4,854,598 + PFR28_04251 0.22 -1.7
4,854,599 - PFR28_04251 0.22 +1.7
4,854,599 - PFR28_04251 0.22 -2.1
4,854,599 - PFR28_04251 0.22 +2.0
4,854,599 - PFR28_04251 0.22 +1.7
4,854,599 - PFR28_04251 0.22 -3.9
4,854,599 - PFR28_04251 0.22 -2.3
4,854,608 - PFR28_04251 0.23 +0.8
4,854,805 + PFR28_04251 0.51 -1.8
4,854,805 + PFR28_04251 0.51 +1.9
4,854,805 + PFR28_04251 0.51 +1.0
4,854,805 + PFR28_04251 0.51 -2.8
4,854,806 - PFR28_04251 0.51 -1.0
4,855,101 - +0.1
4,855,174 + +0.6
4,855,174 + -2.2
4,855,174 + -2.0
4,855,174 + +1.5
4,855,174 + -0.3
4,855,174 + +1.4
4,855,174 + -1.0
4,855,174 + +0.0
4,855,175 - +2.1
4,855,175 - +1.0
4,855,175 - +0.9
4,855,175 - -3.4
4,855,175 - +1.2
4,855,175 - +1.9
4,855,175 - +1.9
4,855,214 - -3.6
4,855,243 + +0.9
4,855,244 - -2.8
4,855,244 - -1.0
4,855,441 + PFR28_04252 0.34 -3.3
4,855,441 + PFR28_04252 0.34 -2.4
4,855,441 + PFR28_04252 0.34 +1.1
4,855,441 + PFR28_04252 0.34 +2.2
4,855,441 + PFR28_04252 0.34 -1.8
4,855,441 + PFR28_04252 0.34 +0.2
4,855,441 + PFR28_04252 0.34 -1.0
4,855,441 + PFR28_04252 0.34 +1.3
4,855,442 - PFR28_04252 0.34 -0.8
4,855,442 - PFR28_04252 0.34 +4.0
4,855,442 - PFR28_04252 0.34 -0.3
4,855,442 - PFR28_04252 0.34 -3.2
4,855,442 - PFR28_04252 0.34 -3.7
4,855,442 - PFR28_04252 0.34 -0.1
4,855,442 - PFR28_04252 0.34 -1.4
4,855,549 + PFR28_04252 0.47 +0.3
4,855,549 + PFR28_04252 0.47 +0.2
4,855,549 + PFR28_04252 0.47 -2.8
4,855,550 - PFR28_04252 0.47 -0.4
4,855,550 - PFR28_04252 0.47 +1.3
4,855,550 - PFR28_04252 0.47 -2.0
4,855,550 - PFR28_04252 0.47 +1.9
4,855,751 - PFR28_04252 0.73 +0.7
4,855,751 - PFR28_04252 0.73 +2.6
4,855,885 + PFR28_04252 0.90 +0.4
4,855,918 + -2.9
4,855,919 - -2.0
4,855,919 - +1.7
4,855,919 - +0.4
4,855,922 + -0.5
4,855,922 + +0.6
4,855,923 - +2.3
4,856,142 - PFR28_04253 0.39 -0.8

Or see this region's nucleotide sequence