Strain Fitness in Pseudomonas sp. RS175 around PFR28_03330

Experiment: 4-Hydroxyphenylpropionic (C) 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxyphenylpropionic (C) 2.5 mM
3,836,298	-		PFR28_03329	0.34	-3.6
3,836,458	+		PFR28_03329	0.48	-0.0
3,836,509	+		PFR28_03329	0.52	+3.0
3,836,509	+		PFR28_03329	0.52	-2.9
3,836,510	-		PFR28_03329	0.52	-1.0
3,836,510	-		PFR28_03329	0.52	+2.0
3,836,521	+		PFR28_03329	0.53	-4.0
3,836,521	+		PFR28_03329	0.53	+0.8
3,836,521	+		PFR28_03329	0.53	-1.9
3,836,521	+		PFR28_03329	0.53	-1.5
3,836,521	+		PFR28_03329	0.53	-2.0
3,836,521	+		PFR28_03329	0.53	+0.2
3,836,522	-		PFR28_03329	0.53	-0.3
3,836,522	-		PFR28_03329	0.53	-2.1
3,836,522	-		PFR28_03329	0.53	+2.5
3,836,522	-		PFR28_03329	0.53	+0.2
3,836,522	-		PFR28_03329	0.53	+1.4
3,836,522	-		PFR28_03329	0.53	-0.6
3,836,522	-		PFR28_03329	0.53	+6.1
3,836,522	-		PFR28_03329	0.53	-1.8
3,836,522	-		PFR28_03329	0.53	-2.9
3,836,657	+		PFR28_03329	0.65	+1.9
3,836,658	-		PFR28_03329	0.65	+0.5
3,836,658	-		PFR28_03329	0.65	-2.4
3,836,658	-		PFR28_03329	0.65	-1.4
3,836,658	-		PFR28_03329	0.65	+1.8
3,836,779	+		PFR28_03329	0.76	-1.4
3,836,779	+		PFR28_03329	0.76	-1.6
3,836,779	+		PFR28_03329	0.76	-3.5
3,836,779	+		PFR28_03329	0.76	-1.6
3,836,779	+		PFR28_03329	0.76	+0.6
3,836,779	+		PFR28_03329	0.76	-1.6
3,836,779	+		PFR28_03329	0.76	-0.1
3,836,779	+		PFR28_03329	0.76	-2.6
3,836,779	+		PFR28_03329	0.76	-0.2
3,836,780	-		PFR28_03329	0.76	+1.3
3,836,780	-		PFR28_03329	0.76	+0.6
3,836,780	-		PFR28_03329	0.76	-2.6
3,836,780	-		PFR28_03329	0.76	+0.5
3,836,789	-		PFR28_03329	0.77	-0.7
3,836,789	-		PFR28_03329	0.77	-1.3
3,836,789	-		PFR28_03329	0.77	+0.9
3,836,789	-		PFR28_03329	0.77	-0.2
3,836,803	+		PFR28_03329	0.78	-2.7
3,836,803	+		PFR28_03329	0.78	+1.7
3,836,803	+		PFR28_03329	0.78	-2.5
3,836,804	-		PFR28_03329	0.78	+1.7
3,836,804	-		PFR28_03329	0.78	-4.6
3,836,804	-		PFR28_03329	0.78	-0.1
3,836,804	-		PFR28_03329	0.78	+0.1
3,836,804	-		PFR28_03329	0.78	+1.5
3,837,079	+				-0.1
3,837,254	+				-3.1
3,837,254	+				-0.8
3,837,254	+				+1.6
3,837,254	+				+0.9
3,837,254	+				+0.2
3,837,254	+				-0.9
3,837,254	+				-1.2
3,837,254	+				-0.5
3,837,255	-				-3.4
3,837,255	-				-2.8
3,837,255	-				-2.6
3,837,255	-				+3.3
3,837,255	-				-1.9
3,837,255	-				+0.1
3,837,255	-				-1.9
3,837,256	+				+1.3
3,837,257	-				-0.6
3,837,257	-				-2.4
3,837,257	-				+0.8
3,837,305	+				+1.7
3,837,305	+				-3.2
3,837,305	+				+0.9
3,837,305	+				-1.1
3,837,305	+				+1.0
3,837,305	+				-0.8
3,837,305	+				-3.5
3,837,306	-				+2.2
3,837,306	-				-0.9
3,837,306	-				-3.9
3,837,306	-				-3.6
3,837,306	-				-2.6
3,837,306	-				+2.1
3,837,306	-				-2.1
3,837,350	+				-3.0
3,837,350	+				-0.3
3,837,351	-				-2.2
3,837,351	-				-1.3
3,837,351	-				-1.9
3,837,488	+		PFR28_03330	0.14	-1.1
3,837,488	+		PFR28_03330	0.14	-0.8
3,837,488	+		PFR28_03330	0.14	+2.9
3,837,488	+		PFR28_03330	0.14	-1.6
3,837,488	+		PFR28_03330	0.14	+1.6
3,837,489	-		PFR28_03330	0.14	+0.8
3,837,489	-		PFR28_03330	0.14	-0.6
3,837,489	-		PFR28_03330	0.14	-2.9
3,837,489	-		PFR28_03330	0.14	+0.0
3,837,489	-		PFR28_03330	0.14	-2.0
3,837,489	-		PFR28_03330	0.14	-2.0
3,837,489	-		PFR28_03330	0.14	-1.2
3,837,489	-		PFR28_03330	0.14	+0.1
3,837,501	-		PFR28_03330	0.14	-2.4
3,837,536	+		PFR28_03330	0.15	-2.6
3,837,536	+		PFR28_03330	0.15	+4.0
3,837,537	-		PFR28_03330	0.15	+0.6
3,837,698	+		PFR28_03330	0.21	-1.0
3,837,698	+		PFR28_03330	0.21	-0.0
3,837,698	+		PFR28_03330	0.21	+1.6
3,837,698	+		PFR28_03330	0.21	-3.9
3,837,698	+		PFR28_03330	0.21	+0.4
3,837,699	-		PFR28_03330	0.21	-1.2
3,837,699	-		PFR28_03330	0.21	-0.1
3,837,699	-		PFR28_03330	0.21	+1.6
3,837,699	-		PFR28_03330	0.21	-0.5
3,837,737	+		PFR28_03330	0.22	+1.4
3,837,737	+		PFR28_03330	0.22	-2.0
3,837,737	+		PFR28_03330	0.22	-2.9
3,837,738	-		PFR28_03330	0.22	+4.6
3,837,872	+		PFR28_03330	0.26	-0.5
3,837,873	-		PFR28_03330	0.26	+2.1
3,837,873	-		PFR28_03330	0.26	-0.8
3,837,873	-		PFR28_03330	0.26	+0.9
3,837,911	+		PFR28_03330	0.28	+1.0
3,837,912	-		PFR28_03330	0.28	+1.8
3,837,966	+		PFR28_03330	0.30	-3.4
3,838,306	+		PFR28_03330	0.41	-2.1
3,838,307	-		PFR28_03330	0.41	-0.5
3,838,403	+		PFR28_03330	0.44	+0.5
3,838,403	+		PFR28_03330	0.44	+0.1
3,838,403	+		PFR28_03330	0.44	+1.5
3,838,403	+		PFR28_03330	0.44	-2.9
3,838,404	-		PFR28_03330	0.44	-4.9
3,838,656	+		PFR28_03330	0.52	+1.8
3,838,657	-		PFR28_03330	0.52	+0.2
3,838,671	+		PFR28_03330	0.53	-0.0
3,838,671	+		PFR28_03330	0.53	-2.1
3,838,671	+		PFR28_03330	0.53	-1.7
3,838,672	-		PFR28_03330	0.53	+2.2
3,838,672	-		PFR28_03330	0.53	+0.1
3,838,672	-		PFR28_03330	0.53	+2.0
3,838,672	-		PFR28_03330	0.53	-3.4
3,838,784	+		PFR28_03330	0.57	-1.8
3,838,785	-		PFR28_03330	0.57	+1.7
3,838,797	-		PFR28_03330	0.57	+1.4
3,838,838	+		PFR28_03330	0.58	-0.8
3,838,838	+		PFR28_03330	0.58	+1.5
3,838,838	+		PFR28_03330	0.58	-3.7
3,838,839	-		PFR28_03330	0.58	+1.8
3,838,839	-		PFR28_03330	0.58	-2.3
3,838,841	+		PFR28_03330	0.58	-2.3
3,838,841	+		PFR28_03330	0.58	+4.0
3,838,841	+		PFR28_03330	0.58	+0.8
3,838,841	+		PFR28_03330	0.58	-1.6
3,838,842	-		PFR28_03330	0.58	-2.6
3,838,842	-		PFR28_03330	0.58	-2.9
3,838,842	-		PFR28_03330	0.58	-3.0
3,838,842	-		PFR28_03330	0.58	+0.8
3,838,842	-		PFR28_03330	0.58	+0.8
3,838,842	-		PFR28_03330	0.58	-1.9
3,838,842	-		PFR28_03330	0.58	+0.1
3,838,865	+		PFR28_03330	0.59	+1.4
3,838,866	-		PFR28_03330	0.59	+0.8
3,838,866	-		PFR28_03330	0.59	+1.2
3,838,866	-		PFR28_03330	0.59	-1.9
3,838,866	-		PFR28_03330	0.59	+0.4
3,839,070	-		PFR28_03330	0.66	-2.7
3,839,278	+		PFR28_03330	0.73	+0.5
3,839,297	+		PFR28_03330	0.73	-3.2
3,839,297	+		PFR28_03330	0.73	-0.3
3,839,297	+		PFR28_03330	0.73	-2.3
3,839,297	+		PFR28_03330	0.73	-2.4
3,839,297	+		PFR28_03330	0.73	+0.2
3,839,297	+		PFR28_03330	0.73	+0.9
3,839,297	+		PFR28_03330	0.73	+1.2
3,839,297	+		PFR28_03330	0.73	+0.8
3,839,298	-		PFR28_03330	0.73	+0.5
3,839,298	-		PFR28_03330	0.73	+4.3
3,839,298	-		PFR28_03330	0.73	-2.3
3,839,298	-		PFR28_03330	0.73	+0.3
3,839,298	-		PFR28_03330	0.73	-0.5
3,839,316	+		PFR28_03330	0.74	+0.4
3,839,316	+		PFR28_03330	0.74	+3.4
3,839,316	+		PFR28_03330	0.74	+0.9
3,839,357	+		PFR28_03330	0.75	-0.2
3,839,357	+		PFR28_03330	0.75	-0.3
3,839,357	+		PFR28_03330	0.75	-0.2
3,839,357	+		PFR28_03330	0.75	-3.3
3,839,358	-		PFR28_03330	0.75	-0.3
3,839,358	-		PFR28_03330	0.75	+2.0
3,839,358	-		PFR28_03330	0.75	+0.5
3,839,358	-		PFR28_03330	0.75	-2.2
3,839,360	+		PFR28_03330	0.76	+0.8
3,839,360	+		PFR28_03330	0.76	-0.7
3,839,360	+		PFR28_03330	0.76	-2.8
3,839,360	+		PFR28_03330	0.76	-2.2
3,839,360	+		PFR28_03330	0.76	+1.1
3,839,360	+		PFR28_03330	0.76	-1.5
3,839,360	+		PFR28_03330	0.76	+2.7
3,839,360	+		PFR28_03330	0.76	+0.3
3,839,360	+		PFR28_03330	0.76	+0.6
3,839,361	-		PFR28_03330	0.76	-4.0
3,839,361	-		PFR28_03330	0.76	-1.0
3,839,361	-		PFR28_03330	0.76	-2.4
3,839,361	-		PFR28_03330	0.76	+1.6
3,839,565	-		PFR28_03330	0.82	+0.9
3,839,565	-		PFR28_03330	0.82	+1.0
3,839,565	-		PFR28_03330	0.82	+0.7
3,839,649	+		PFR28_03330	0.85	-3.2
3,839,765	+		PFR28_03330	0.89	-0.6
3,839,765	+		PFR28_03330	0.89	+2.0
3,839,765	+		PFR28_03330	0.89	-1.0
3,839,765	+		PFR28_03330	0.89	-3.0
3,839,765	+		PFR28_03330	0.89	+0.7
3,839,765	+		PFR28_03330	0.89	-0.7
3,839,765	+		PFR28_03330	0.89	+0.4
3,839,765	+		PFR28_03330	0.89	-1.2
3,839,765	+		PFR28_03330	0.89	+1.5
3,839,765	+		PFR28_03330	0.89	+0.9
3,839,765	+		PFR28_03330	0.89	-1.5
3,839,765	+		PFR28_03330	0.89	+0.9
3,839,766	-		PFR28_03330	0.89	+0.7
3,839,766	-		PFR28_03330	0.89	-1.5
3,839,766	-		PFR28_03330	0.89	-2.3
3,839,766	-		PFR28_03330	0.89	-0.2
3,839,766	-		PFR28_03330	0.89	+2.4
3,839,766	-		PFR28_03330	0.89	-2.5
3,839,766	-		PFR28_03330	0.89	-0.7
3,839,766	-		PFR28_03330	0.89	-0.5
3,839,766	-		PFR28_03330	0.89	-0.2
3,839,766	-		PFR28_03330	0.89	-3.8
3,839,775	+		PFR28_03330	0.89	+1.4
3,839,775	+		PFR28_03330	0.89	+0.2
3,839,776	-		PFR28_03330	0.89	-2.1
3,839,914	-				+0.8
3,839,914	-				-3.0
3,839,950	-				+0.8
3,840,051	+				+1.2
3,840,065	+				+3.2
3,840,065	+				+1.2
3,840,065	+				+1.1
3,840,066	-				-1.2
3,840,066	-				+0.1
3,840,066	-				-1.3
3,840,066	-				+2.9
3,840,066	-				-0.3
3,840,066	-				-2.6
3,840,066	-				+0.6
3,840,116	+				-0.8
3,840,117	-				-2.9
3,840,117	-				-0.1
3,840,361	+				+1.8
3,840,385	+				+0.5
3,840,420	-				-2.3
3,840,603	+		PFR28_03332	0.31	+1.3
3,840,603	+		PFR28_03332	0.31	-5.0
3,840,604	-		PFR28_03332	0.31	-0.5
3,840,605	+		PFR28_03332	0.31	-1.8
3,840,605	+		PFR28_03332	0.31	-2.0
3,840,605	+		PFR28_03332	0.31	-1.4
3,840,605	+		PFR28_03332	0.31	-3.1
3,840,605	+		PFR28_03332	0.31	+0.6
3,840,605	+		PFR28_03332	0.31	+1.4
3,840,606	-		PFR28_03332	0.32	-1.3
3,840,606	-		PFR28_03332	0.32	-2.1
3,840,606	-		PFR28_03332	0.32	+1.5
3,840,606	-		PFR28_03332	0.32	+1.1
3,840,606	-		PFR28_03332	0.32	-1.3
3,840,606	-		PFR28_03332	0.32	+0.2
3,840,606	-		PFR28_03332	0.32	+0.2
3,840,606	-		PFR28_03332	0.32	-3.6
3,840,606	-		PFR28_03332	0.32	+0.6
3,840,606	-		PFR28_03332	0.32	-2.3
3,840,606	-		PFR28_03332	0.32	-0.0
3,840,673	-		PFR28_03332	0.41	+2.6
3,840,719	+		PFR28_03332	0.47	-1.3
3,840,719	+		PFR28_03332	0.47	+0.2
3,840,720	-		PFR28_03332	0.48	-0.8
3,840,780	+		PFR28_03332	0.56	-1.6
3,840,780	+		PFR28_03332	0.56	+1.6
3,840,780	+		PFR28_03332	0.56	-1.0
3,840,780	+		PFR28_03332	0.56	+2.1
3,840,780	+		PFR28_03332	0.56	-3.1
3,840,874	+		PFR28_03332	0.69	-2.3
3,840,875	-		PFR28_03332	0.69	+0.5
3,840,912	-		PFR28_03332	0.75	+1.2
3,840,912	-		PFR28_03332	0.75	-3.5
3,840,912	-		PFR28_03332	0.75	-2.0
3,840,938	+		PFR28_03332	0.78	-0.7
3,840,943	+		PFR28_03332	0.79	+0.4
3,840,943	+		PFR28_03332	0.79	+1.5
3,840,943	+		PFR28_03332	0.79	-1.0
3,840,944	-		PFR28_03332	0.79	-0.0
3,840,944	-		PFR28_03332	0.79	+3.2
3,840,944	-		PFR28_03332	0.79	-0.8
3,840,944	-		PFR28_03332	0.79	-0.4
3,840,944	-		PFR28_03332	0.79	+1.6
3,841,069	+				-2.6
3,841,098	+				+0.8
3,841,099	-				-3.8