Strain Fitness in Pseudomonas sp. RS175 around PFR28_03107

Experiment: 4-Hydroxyphenylpropionic (C) 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxyphenylpropionic (C) 2.5 mM
3,612,365	-				-0.4
3,612,393	+				-0.4
3,612,393	+				-3.5
3,612,393	+				-0.2
3,612,393	+				-1.2
3,612,393	+				-4.9
3,612,393	+				-4.3
3,612,393	+				+0.5
3,612,393	+				-0.4
3,612,394	-				-0.4
3,612,394	-				-5.5
3,612,394	-				-3.7
3,612,394	-				-2.4
3,612,394	-				-0.8
3,612,394	-				-2.1
3,612,397	+				-0.0
3,612,397	+				-2.0
3,612,397	+				-1.0
3,612,398	-				-1.2
3,612,398	-				-1.7
3,612,439	+				-0.5
3,612,439	+				-0.2
3,612,443	+				-3.6
3,612,443	+				-0.0
3,612,443	+				-4.7
3,612,444	-				-0.8
3,612,444	-				-3.1
3,612,444	-				-1.0
3,612,444	-				-0.9
3,612,623	+		PFR28_03106	0.24	-4.6
3,612,623	+		PFR28_03106	0.24	+0.2
3,612,623	+		PFR28_03106	0.24	-3.2
3,612,624	-		PFR28_03106	0.24	-0.4
3,612,624	-		PFR28_03106	0.24	-1.7
3,612,624	-		PFR28_03106	0.24	-0.5
3,612,624	-		PFR28_03106	0.24	+1.2
3,612,656	+		PFR28_03106	0.28	+0.4
3,612,657	-		PFR28_03106	0.28	-3.7
3,612,668	+		PFR28_03106	0.30	-0.9
3,612,668	+		PFR28_03106	0.30	-0.7
3,612,669	-		PFR28_03106	0.30	-1.3
3,612,716	+		PFR28_03106	0.36	-0.4
3,612,716	+		PFR28_03106	0.36	+1.7
3,612,716	+		PFR28_03106	0.36	-1.1
3,612,716	+		PFR28_03106	0.36	-1.6
3,612,716	+		PFR28_03106	0.36	-2.8
3,612,717	-		PFR28_03106	0.36	-5.7
3,612,717	-		PFR28_03106	0.36	-0.2
3,612,717	-		PFR28_03106	0.36	-1.9
3,612,717	-		PFR28_03106	0.36	-3.3
3,612,944	+		PFR28_03106	0.65	-4.2
3,612,944	+		PFR28_03106	0.65	-2.4
3,612,944	+		PFR28_03106	0.65	+0.2
3,612,944	+		PFR28_03106	0.65	-0.5
3,612,944	+		PFR28_03106	0.65	-0.0
3,612,944	+		PFR28_03106	0.65	-0.8
3,612,944	+		PFR28_03106	0.65	+1.1
3,612,945	-		PFR28_03106	0.65	-2.7
3,612,945	-		PFR28_03106	0.65	-0.8
3,612,945	-		PFR28_03106	0.65	-1.5
3,612,945	-		PFR28_03106	0.65	-0.6
3,612,945	-		PFR28_03106	0.65	-1.6
3,612,945	-		PFR28_03106	0.65	-1.9
3,612,945	-		PFR28_03106	0.65	-3.6
3,612,945	-		PFR28_03106	0.65	-0.9
3,612,965	+		PFR28_03106	0.67	-1.1
3,612,965	+		PFR28_03106	0.67	-0.1
3,612,965	+		PFR28_03106	0.67	-2.4
3,612,966	-		PFR28_03106	0.67	-1.2
3,612,966	-		PFR28_03106	0.67	+0.8
3,612,966	-		PFR28_03106	0.67	-3.4
3,612,966	-		PFR28_03106	0.67	-2.5
3,612,973	-		PFR28_03106	0.68	+0.0
3,613,006	+		PFR28_03106	0.72	-5.6
3,613,006	+		PFR28_03106	0.72	-0.7
3,613,007	-		PFR28_03106	0.73	-0.7
3,613,028	+		PFR28_03106	0.75	-4.3
3,613,028	+		PFR28_03106	0.75	-1.1
3,613,029	-		PFR28_03106	0.75	+0.8
3,613,029	-		PFR28_03106	0.75	+1.1
3,613,166	+				-2.3
3,613,167	-				+0.7
3,613,181	+				+0.2
3,613,181	+				-1.0
3,613,182	-				-5.8
3,613,182	-				-2.1
3,613,182	-				-1.5
3,613,182	-				-0.1
3,613,188	-				-1.8
3,613,188	-				-0.1
3,613,336	+				-2.1
3,613,336	+				-1.0
3,613,336	+				+0.6
3,613,336	+				+0.0
3,613,336	+				-0.0
3,613,337	-				-1.4
3,613,337	-				+0.6
3,613,337	-				-2.2
3,613,337	-				-2.7
3,613,337	-				-2.7
3,613,356	+				-1.2
3,613,459	+		PFR28_03107	0.11	-2.6
3,613,593	+		PFR28_03107	0.26	+0.4
3,613,593	+		PFR28_03107	0.26	+4.9
3,613,593	+		PFR28_03107	0.26	-0.4
3,613,593	+		PFR28_03107	0.26	+1.2
3,613,593	+		PFR28_03107	0.26	+0.2
3,613,593	+		PFR28_03107	0.26	+1.0
3,613,594	-		PFR28_03107	0.26	-2.9
3,613,594	-		PFR28_03107	0.26	-2.7
3,613,594	-		PFR28_03107	0.26	+0.9
3,613,594	-		PFR28_03107	0.26	-3.0
3,613,594	-		PFR28_03107	0.26	+2.5
3,613,594	-		PFR28_03107	0.26	+0.7
3,613,704	+		PFR28_03107	0.38	+2.6
3,613,704	+		PFR28_03107	0.38	+1.3
3,613,705	-		PFR28_03107	0.38	+0.0
3,613,980	+		PFR28_03107	0.68	+1.1
3,613,980	+		PFR28_03107	0.68	+1.8
3,613,981	-		PFR28_03107	0.68	-3.3
3,614,021	+		PFR28_03107	0.73	+0.1
3,614,022	-		PFR28_03107	0.73	+0.6
3,614,288	+				-1.9
3,614,288	+				+2.4
3,614,288	+				-2.4
3,614,289	-				-3.5
3,614,355	+				-2.2
3,614,355	+				+3.1
3,614,398	-				-1.7
3,614,530	+		PFR28_03108	0.26	+1.6
3,614,531	-		PFR28_03108	0.27	-0.7
3,614,531	-		PFR28_03108	0.27	-0.1
3,614,533	+		PFR28_03108	0.27	-0.5
3,614,533	+		PFR28_03108	0.27	-2.0
3,614,533	+		PFR28_03108	0.27	+2.1
3,614,533	+		PFR28_03108	0.27	+0.5
3,614,533	+		PFR28_03108	0.27	-1.8
3,614,533	+		PFR28_03108	0.27	+3.7
3,614,533	+		PFR28_03108	0.27	-0.8
3,614,533	+		PFR28_03108	0.27	-1.0
3,614,533	+		PFR28_03108	0.27	+0.3
3,614,534	-		PFR28_03108	0.27	+0.2
3,614,534	-		PFR28_03108	0.27	-0.0
3,614,534	-		PFR28_03108	0.27	-1.2
3,614,534	-		PFR28_03108	0.27	+1.2
3,614,534	-		PFR28_03108	0.27	+0.2
3,614,534	-		PFR28_03108	0.27	+0.8
3,614,534	-		PFR28_03108	0.27	+0.3
3,614,536	+		PFR28_03108	0.27	+1.8
3,614,536	+		PFR28_03108	0.27	-0.9
3,614,537	-		PFR28_03108	0.27	-2.4
3,614,537	-		PFR28_03108	0.27	+1.2
3,614,653	+		PFR28_03108	0.45	-3.3
3,614,653	+		PFR28_03108	0.45	-2.3
3,614,653	+		PFR28_03108	0.45	-1.7
3,614,654	-		PFR28_03108	0.46	+2.0
3,614,654	-		PFR28_03108	0.46	+0.3
3,614,654	-		PFR28_03108	0.46	-0.7
3,614,654	-		PFR28_03108	0.46	-0.7
3,614,654	-		PFR28_03108	0.46	-0.6
3,614,654	-		PFR28_03108	0.46	-0.2
3,614,881	+		PFR28_03108	0.81	-0.9
3,614,881	+		PFR28_03108	0.81	-3.4
3,614,882	-		PFR28_03108	0.81	+4.4
3,614,882	-		PFR28_03108	0.81	+0.7
3,614,944	+				+0.9
3,615,057	+				+1.3
3,615,058	-				-1.4
3,615,058	-				+0.6
3,615,064	+				+0.5
3,615,064	+				-0.7
3,615,064	+				+0.2
3,615,064	+				-1.1
3,615,064	+				-1.7
3,615,064	+				+0.2
3,615,064	+				-2.9
3,615,064	+				+0.8
3,615,064	+				-0.1
3,615,064	+				+0.8
3,615,064	+				+0.8
3,615,064	+				+1.5
3,615,064	+				+1.9
3,615,064	+				+0.6
3,615,064	+				-0.2
3,615,064	+				-0.3
3,615,065	-				-0.1
3,615,065	-				+0.7
3,615,065	-				-2.1
3,615,065	-				-0.0
3,615,065	-				-0.7
3,615,065	-				+0.7
3,615,065	-				+0.6
3,615,065	-				-0.1
3,615,065	-				-0.8
3,615,065	-				-1.0
3,615,065	-				+0.1
3,615,065	-				+2.1
3,615,065	-				+1.4
3,615,065	-				+0.2
3,615,065	-				-2.5
3,615,065	-				-0.6
3,615,065	-				+0.9
3,615,065	-				+0.7
3,615,065	-				-1.7
3,615,065	-				-0.5