Strain Fitness in Pseudomonas sp. RS175 around PFR28_02755

Experiment: 4-Hydroxyphenylpropionic (C) 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	4-Hydroxyphenylpropionic (C) 2.5 mM
3,223,653	+				-2.2
3,223,653	+				+0.1
3,223,653	+				-3.1
3,223,654	-				+1.3
3,223,654	-				-1.5
3,223,654	-				-0.6
3,223,654	-				+0.5
3,223,654	-				+1.2
3,223,850	-		PFR28_02754	0.20	+0.3
3,223,870	+		PFR28_02754	0.23	+1.0
3,223,870	+		PFR28_02754	0.23	-2.8
3,223,912	+		PFR28_02754	0.28	-2.4
3,223,912	+		PFR28_02754	0.28	-2.0
3,223,912	+		PFR28_02754	0.28	-2.4
3,223,913	-		PFR28_02754	0.28	+1.2
3,223,913	-		PFR28_02754	0.28	+1.4
3,223,913	-		PFR28_02754	0.28	+2.0
3,223,956	+		PFR28_02754	0.33	+1.9
3,223,956	+		PFR28_02754	0.33	-0.6
3,223,957	-		PFR28_02754	0.34	-0.0
3,224,277	+		PFR28_02754	0.73	-2.9
3,224,277	+		PFR28_02754	0.73	+1.7
3,224,277	+		PFR28_02754	0.73	+1.4
3,224,435	-				+0.9
3,224,585	+				+1.5
3,224,607	+				-1.3
3,224,608	-				-2.1
3,224,608	-				-2.4
3,224,755	+				-1.1
3,224,755	+				-1.5
3,224,755	+				+1.9
3,224,756	-				+1.1
3,224,758	+				+3.6
3,224,758	+				+1.6
3,224,759	-				-1.5
3,224,759	-				-1.3
3,225,109	+		PFR28_02755	0.35	+1.2
3,225,110	-		PFR28_02755	0.35	-1.2
3,225,110	-		PFR28_02755	0.35	-3.1
3,225,110	-		PFR28_02755	0.35	+0.4
3,225,110	-		PFR28_02755	0.35	-1.6
3,225,110	-		PFR28_02755	0.35	-2.9
3,225,110	-		PFR28_02755	0.35	+0.7
3,225,110	-		PFR28_02755	0.35	-0.9
3,225,129	+		PFR28_02755	0.36	+0.1
3,225,183	+		PFR28_02755	0.40	-3.1
3,225,183	+		PFR28_02755	0.40	+1.1
3,225,183	+		PFR28_02755	0.40	+0.4
3,225,184	-		PFR28_02755	0.40	+1.2
3,225,184	-		PFR28_02755	0.40	+2.1
3,225,184	-		PFR28_02755	0.40	+0.1
3,225,184	-		PFR28_02755	0.40	+0.9
3,225,184	-		PFR28_02755	0.40	+0.7
3,225,184	-		PFR28_02755	0.40	-0.9
3,225,184	-		PFR28_02755	0.40	-1.6
3,225,184	-		PFR28_02755	0.40	+1.7
3,225,184	-		PFR28_02755	0.40	+0.1
3,225,184	-		PFR28_02755	0.40	-3.0
3,225,184	-		PFR28_02755	0.40	-0.6
3,225,189	+		PFR28_02755	0.41	+0.9
3,225,189	+		PFR28_02755	0.41	-0.9
3,225,189	+		PFR28_02755	0.41	+0.5
3,225,189	+		PFR28_02755	0.41	-0.4
3,225,189	+		PFR28_02755	0.41	+1.7
3,225,189	+		PFR28_02755	0.41	+0.1
3,225,189	+		PFR28_02755	0.41	+0.1
3,225,189	+		PFR28_02755	0.41	-3.6
3,225,189	+		PFR28_02755	0.41	-3.9
3,225,189	+		PFR28_02755	0.41	-2.1
3,225,189	+		PFR28_02755	0.41	-1.5
3,225,189	+		PFR28_02755	0.41	+0.8
3,225,189	+		PFR28_02755	0.41	+0.0
3,225,189	+		PFR28_02755	0.41	+0.6
3,225,189	+		PFR28_02755	0.41	+1.8
3,225,189	+		PFR28_02755	0.41	+1.2
3,225,189	+		PFR28_02755	0.41	+0.7
3,225,189	+		PFR28_02755	0.41	-1.0
3,225,189	+		PFR28_02755	0.41	-1.3
3,225,189	+		PFR28_02755	0.41	-3.2
3,225,189	+		PFR28_02755	0.41	+2.0
3,225,189	+		PFR28_02755	0.41	+0.1
3,225,189	+		PFR28_02755	0.41	+1.5
3,225,189	+		PFR28_02755	0.41	+0.6
3,225,189	+		PFR28_02755	0.41	+0.9
3,225,189	+		PFR28_02755	0.41	+1.7
3,225,189	+		PFR28_02755	0.41	-2.0
3,225,189	+		PFR28_02755	0.41	+0.1
3,225,189	+		PFR28_02755	0.41	+0.3
3,225,189	+		PFR28_02755	0.41	-1.6
3,225,189	+		PFR28_02755	0.41	-2.1
3,225,189	+		PFR28_02755	0.41	-0.9
3,225,189	+		PFR28_02755	0.41	-4.3
3,225,190	-		PFR28_02755	0.41	-2.1
3,225,190	-		PFR28_02755	0.41	+0.6
3,225,190	-		PFR28_02755	0.41	+0.5
3,225,190	-		PFR28_02755	0.41	+0.5
3,225,190	-		PFR28_02755	0.41	-0.8
3,225,190	-		PFR28_02755	0.41	+1.7
3,225,190	-		PFR28_02755	0.41	+0.8
3,225,190	-		PFR28_02755	0.41	+1.7
3,225,190	-		PFR28_02755	0.41	+1.4
3,225,190	-		PFR28_02755	0.41	-3.1
3,225,190	-		PFR28_02755	0.41	+0.6
3,225,190	-		PFR28_02755	0.41	-3.1
3,225,190	-		PFR28_02755	0.41	-3.4
3,225,190	-		PFR28_02755	0.41	+0.2
3,225,190	-		PFR28_02755	0.41	-2.2
3,225,190	-		PFR28_02755	0.41	+1.6
3,225,190	-		PFR28_02755	0.41	+2.1
3,225,190	-		PFR28_02755	0.41	-0.6
3,225,190	-		PFR28_02755	0.41	+1.2
3,225,190	-		PFR28_02755	0.41	-1.4
3,225,191	+		PFR28_02755	0.41	-4.0
3,225,192	-		PFR28_02755	0.41	-4.2
3,225,192	-		PFR28_02755	0.41	-1.3
3,225,218	+		PFR28_02755	0.43	+1.1
3,225,218	+		PFR28_02755	0.43	-2.8
3,225,219	-		PFR28_02755	0.43	+0.1
3,225,219	-		PFR28_02755	0.43	-2.0
3,225,219	-		PFR28_02755	0.43	-1.8
3,225,224	-		PFR28_02755	0.43	+0.8
3,225,256	+		PFR28_02755	0.46	+1.4
3,225,257	-		PFR28_02755	0.46	+1.7
3,225,257	-		PFR28_02755	0.46	-1.8
3,225,272	-		PFR28_02755	0.47	-3.7
3,225,285	-		PFR28_02755	0.48	-2.9
3,225,356	+		PFR28_02755	0.53	+2.7
3,225,356	+		PFR28_02755	0.53	+0.4
3,225,357	-		PFR28_02755	0.53	-1.1
3,225,357	-		PFR28_02755	0.53	+1.3
3,225,357	-		PFR28_02755	0.53	-1.3
3,225,357	-		PFR28_02755	0.53	+6.1
3,225,357	-		PFR28_02755	0.53	-0.9
3,225,357	-		PFR28_02755	0.53	-2.3
3,225,357	-		PFR28_02755	0.53	+3.5
3,225,444	-		PFR28_02755	0.60	-0.2
3,225,470	+		PFR28_02755	0.62	+1.2
3,225,470	+		PFR28_02755	0.62	+0.1
3,225,471	-		PFR28_02755	0.62	+5.3
3,225,471	-		PFR28_02755	0.62	-0.5
3,225,471	-		PFR28_02755	0.62	-3.4
3,225,734	+		PFR28_02755	0.82	+1.7
3,225,734	+		PFR28_02755	0.82	-2.1
3,225,734	+		PFR28_02755	0.82	-3.0
3,225,734	+		PFR28_02755	0.82	-3.8
3,225,734	+		PFR28_02755	0.82	+3.0
3,225,734	+		PFR28_02755	0.82	+0.4
3,225,734	+		PFR28_02755	0.82	+1.5
3,225,735	-		PFR28_02755	0.82	+1.0
3,225,735	-		PFR28_02755	0.82	-0.6
3,225,735	-		PFR28_02755	0.82	-2.5
3,225,735	-		PFR28_02755	0.82	-3.5
3,225,737	-		PFR28_02755	0.82	+2.3
3,225,866	+				+2.1
3,225,867	-				-1.1
3,225,867	-				+0.6
3,225,974	+				-1.2
3,225,975	-				-1.8
3,225,975	-				+0.4
3,225,975	-				+0.7
3,225,977	+				-0.9
3,225,978	-				+1.7
3,225,978	-				+0.1
3,226,209	+				-1.6
3,226,209	+				+2.9
3,226,209	+				+0.7
3,226,220	+				-4.1
3,226,255	+				+2.9
3,226,255	+				-3.2
3,226,255	+				-1.2
3,226,256	-				+0.4
3,226,256	-				-3.5
3,226,256	-				-1.5
3,226,256	-				+0.9
3,226,256	-				-3.0
3,226,300	+		PFR28_02756	0.11	+1.5
3,226,377	+		PFR28_02756	0.17	+0.6
3,226,377	+		PFR28_02756	0.17	-0.4
3,226,377	+		PFR28_02756	0.17	-1.8
3,226,377	+		PFR28_02756	0.17	-3.9
3,226,377	+		PFR28_02756	0.17	+0.5
3,226,377	+		PFR28_02756	0.17	-4.0
3,226,377	+		PFR28_02756	0.17	+2.7
3,226,377	+		PFR28_02756	0.17	-2.4
3,226,377	+		PFR28_02756	0.17	-1.1
3,226,377	+		PFR28_02756	0.17	+0.3
3,226,378	-		PFR28_02756	0.17	-2.7
3,226,378	-		PFR28_02756	0.17	+1.0
3,226,378	-		PFR28_02756	0.17	+1.1
3,226,914	+		PFR28_02756	0.60	-2.1
3,226,915	-		PFR28_02756	0.60	-1.9
3,226,915	-		PFR28_02756	0.60	-3.6
3,226,915	-		PFR28_02756	0.60	-1.0
3,226,915	-		PFR28_02756	0.60	+0.8
3,226,953	+		PFR28_02756	0.63	+0.1
3,226,954	-		PFR28_02756	0.63	-2.2