Experiment: 4-Hydroxyphenylpropionic (C) 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00368 and PFR28_00369 are separated by 291 nucleotides PFR28_00369 and PFR28_00370 are separated by 91 nucleotides
PFR28_00368: PFR28_00368 - Phosphoenolpyruvate carboxylase, at 402,066 to 404,696
_00368
PFR28_00369: PFR28_00369 - Adenylate kinase, at 404,988 to 405,635
_00369
PFR28_00370: PFR28_00370 - tRNA threonylcarbamoyladenosine biosynthesis protein TsaB, at 405,727 to 406,404
_00370
Position (kb) 404
405
406 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 404.059 kb on - strand, within PFR28_00368 at 404.397 kb on + strand, within PFR28_00368 at 404.398 kb on - strand, within PFR28_00368 at 404.446 kb on + strand at 404.446 kb on + strand at 404.447 kb on - strand at 404.455 kb on + strand at 404.455 kb on + strand at 404.455 kb on + strand at 404.456 kb on - strand at 404.456 kb on - strand at 404.456 kb on - strand at 404.456 kb on - strand at 404.456 kb on - strand at 404.456 kb on - strand at 404.456 kb on - strand at 404.507 kb on - strand at 404.507 kb on - strand at 404.507 kb on - strand at 404.516 kb on + strand at 404.517 kb on - strand at 404.517 kb on - strand at 404.517 kb on - strand at 404.556 kb on + strand at 404.556 kb on + strand at 404.556 kb on + strand at 404.556 kb on + strand at 404.556 kb on + strand at 404.556 kb on + strand at 404.557 kb on - strand at 404.557 kb on - strand at 404.557 kb on - strand at 404.557 kb on - strand at 404.879 kb on + strand at 404.879 kb on + strand at 404.879 kb on + strand at 404.879 kb on + strand at 404.879 kb on + strand at 404.879 kb on + strand at 404.879 kb on + strand at 404.879 kb on + strand at 404.961 kb on + strand at 404.961 kb on + strand at 404.961 kb on + strand at 405.686 kb on + strand at 405.687 kb on - strand at 405.687 kb on - strand at 405.687 kb on - strand at 405.687 kb on - strand at 405.687 kb on - strand at 405.688 kb on + strand at 405.688 kb on + strand at 405.688 kb on + strand at 405.720 kb on + strand at 406.402 kb on + strand at 406.403 kb on - strand at 406.482 kb on - strand at 406.553 kb on + strand at 406.553 kb on + strand at 406.553 kb on + strand at 406.553 kb on + strand at 406.553 kb on + strand at 406.553 kb on + strand at 406.553 kb on + strand at 406.553 kb on + strand at 406.553 kb on + strand at 406.553 kb on + strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand at 406.554 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 4-Hydroxyphenylpropionic (C) 2.5 mM remove 404,059 - PFR28_00368 0.76 -2.0 404,397 + PFR28_00368 0.89 -1.8 404,398 - PFR28_00368 0.89 -1.8 404,446 + -2.5 404,446 + -1.8 404,447 - +1.9 404,455 + -2.0 404,455 + +1.4 404,455 + +0.8 404,456 - -3.6 404,456 - -1.9 404,456 - +1.0 404,456 - -0.7 404,456 - -1.9 404,456 - -0.0 404,456 - -3.6 404,507 - -1.5 404,507 - -3.8 404,507 - +0.4 404,516 + +0.4 404,517 - -3.9 404,517 - +1.4 404,517 - -0.1 404,556 + +1.5 404,556 + +0.9 404,556 + -2.4 404,556 + +1.0 404,556 + -1.0 404,556 + -0.0 404,557 - +1.9 404,557 - -4.0 404,557 - +0.1 404,557 - +0.3 404,879 + -2.9 404,879 + +2.2 404,879 + -0.7 404,879 + +0.9 404,879 + -0.7 404,879 + +2.1 404,879 + +1.0 404,879 + +0.7 404,961 + -1.3 404,961 + -0.6 404,961 + -2.0 405,686 + -0.0 405,687 - +0.5 405,687 - -2.8 405,687 - -1.3 405,687 - -0.8 405,687 - +0.7 405,688 + -1.1 405,688 + -0.1 405,688 + +0.3 405,720 + +0.1 406,402 + -1.6 406,403 - +0.1 406,482 - +0.4 406,553 + -0.5 406,553 + -1.7 406,553 + -3.3 406,553 + +4.8 406,553 + +0.7 406,553 + -3.3 406,553 + -0.3 406,553 + +2.5 406,553 + -3.6 406,553 + +0.8 406,554 - +1.0 406,554 - +0.5 406,554 - -1.8 406,554 - -2.3 406,554 - -3.6 406,554 - -0.3 406,554 - +2.1 406,554 - -2.5 406,554 - +1.0 406,554 - -0.7 406,554 - -0.4 406,554 - -0.7 406,554 - -3.1 406,554 - +1.3 406,554 - -2.1 406,554 - -2.8 406,554 - +0.1
Or see this region's nucleotide sequence