Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3428

Experiment: L-Methionine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3425 and Echvi_3426 are separated by 89 nucleotidesEchvi_3426 and Echvi_3427 are separated by 24 nucleotidesEchvi_3427 and Echvi_3428 are separated by 109 nucleotidesEchvi_3428 and Echvi_3429 are separated by 419 nucleotidesEchvi_3429 and Echvi_3430 are separated by 38 nucleotidesEchvi_3430 and Echvi_3431 overlap by 15 nucleotides Echvi_3425: Echvi_3425 - threonyl-tRNA synthetase, at 4,057,564 to 4,059,513 _3425 Echvi_3426: Echvi_3426 - translation initiation factor IF-3, at 4,059,603 to 4,060,154 _3426 Echvi_3427: Echvi_3427 - ribosomal protein L35, at 4,060,179 to 4,060,373 _3427 Echvi_3428: Echvi_3428 - ribosomal protein L20, at 4,060,483 to 4,060,827 _3428 Echvi_3429: Echvi_3429 - Predicted endonuclease containing a URI domain, at 4,061,247 to 4,061,426 _3429 Echvi_3430: Echvi_3430 - hypothetical protein, at 4,061,465 to 4,061,659 _3430 Echvi_3431: Echvi_3431 - Predicted endonuclease containing a URI domain, at 4,061,645 to 4,061,911 _3431 Position (kb) 4060 4061Strain fitness (log2 ratio) -2 -1 0 1 2at 4060.145 kb on + strandat 4060.167 kb on + strandat 4060.911 kb on + strandat 4060.926 kb on + strandat 4060.928 kb on + strandat 4060.931 kb on + strandat 4060.931 kb on + strandat 4060.932 kb on - strandat 4061.014 kb on + strandat 4061.015 kb on - strandat 4061.081 kb on + strandat 4061.093 kb on - strandat 4061.093 kb on - strandat 4061.093 kb on - strandat 4061.143 kb on + strandat 4061.160 kb on - strandat 4061.161 kb on + strandat 4061.161 kb on + strandat 4061.162 kb on - strandat 4061.162 kb on - strandat 4061.162 kb on - strandat 4061.164 kb on + strandat 4061.165 kb on - strandat 4061.165 kb on - strandat 4061.259 kb on - strandat 4061.259 kb on - strandat 4061.585 kb on - strand, within Echvi_3430at 4061.585 kb on - strand, within Echvi_3430at 4061.590 kb on - strand, within Echvi_3430at 4061.656 kb on - strandat 4061.656 kb on - strandat 4061.656 kb on - strandat 4061.658 kb on - strandat 4061.658 kb on - strandat 4061.658 kb on - strandat 4061.658 kb on - strandat 4061.664 kb on - strandat 4061.664 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
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4,060,145 + -0.1
4,060,167 + +2.1
4,060,911 + -0.7
4,060,926 + +1.4
4,060,928 + +0.5
4,060,931 + +2.7
4,060,931 + +1.9
4,060,932 - -1.7
4,061,014 + +1.3
4,061,015 - -0.9
4,061,081 + +1.6
4,061,093 - +0.3
4,061,093 - -1.4
4,061,093 - -0.8
4,061,143 + +2.4
4,061,160 - -0.1
4,061,161 + +0.4
4,061,161 + +1.4
4,061,162 - +0.9
4,061,162 - -0.5
4,061,162 - -0.4
4,061,164 + +1.8
4,061,165 - -0.0
4,061,165 - -2.2
4,061,259 - -2.2
4,061,259 - -2.3
4,061,585 - Echvi_3430 0.62 -1.0
4,061,585 - Echvi_3430 0.62 -1.0
4,061,590 - Echvi_3430 0.64 -1.1
4,061,656 - -0.1
4,061,656 - -0.9
4,061,656 - -1.0
4,061,658 - -0.4
4,061,658 - -0.3
4,061,658 - -0.9
4,061,658 - -1.7
4,061,664 - -0.4
4,061,664 - -1.1

Or see this region's nucleotide sequence