Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1666

Experiment: L-Methionine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1665 and Echvi_1666 are separated by 107 nucleotidesEchvi_1666 and Echvi_1667 are separated by 191 nucleotides Echvi_1665: Echvi_1665 - hypothetical protein, at 1,936,556 to 1,937,695 _1665 Echvi_1666: Echvi_1666 - Sugar phosphate isomerases/epimerases, at 1,937,803 to 1,938,723 _1666 Echvi_1667: Echvi_1667 - hypothetical protein, at 1,938,915 to 1,941,662 _1667 Position (kb) 1937 1938 1939Strain fitness (log2 ratio) -2 -1 0 1 2at 1936.855 kb on + strand, within Echvi_1665at 1936.855 kb on + strand, within Echvi_1665at 1936.861 kb on - strand, within Echvi_1665at 1936.870 kb on + strand, within Echvi_1665at 1936.870 kb on + strand, within Echvi_1665at 1936.871 kb on - strand, within Echvi_1665at 1936.889 kb on + strand, within Echvi_1665at 1936.889 kb on + strand, within Echvi_1665at 1936.922 kb on + strand, within Echvi_1665at 1936.922 kb on + strand, within Echvi_1665at 1936.929 kb on + strand, within Echvi_1665at 1936.987 kb on + strand, within Echvi_1665at 1936.987 kb on + strand, within Echvi_1665at 1937.285 kb on + strand, within Echvi_1665at 1937.385 kb on - strand, within Echvi_1665at 1937.385 kb on - strand, within Echvi_1665at 1937.385 kb on - strand, within Echvi_1665at 1937.436 kb on + strand, within Echvi_1665at 1937.559 kb on + strand, within Echvi_1665at 1937.559 kb on + strand, within Echvi_1665at 1937.559 kb on + strand, within Echvi_1665at 1937.560 kb on - strand, within Echvi_1665at 1937.560 kb on - strand, within Echvi_1665at 1937.560 kb on - strand, within Echvi_1665at 1937.563 kb on + strand, within Echvi_1665at 1937.563 kb on + strand, within Echvi_1665at 1937.563 kb on + strand, within Echvi_1665at 1937.563 kb on + strand, within Echvi_1665at 1937.563 kb on + strand, within Echvi_1665at 1937.563 kb on + strand, within Echvi_1665at 1937.564 kb on - strand, within Echvi_1665at 1937.564 kb on - strand, within Echvi_1665at 1937.564 kb on - strand, within Echvi_1665at 1937.564 kb on - strand, within Echvi_1665at 1937.564 kb on - strand, within Echvi_1665at 1937.564 kb on - strand, within Echvi_1665at 1937.588 kb on + strandat 1937.693 kb on + strandat 1937.699 kb on + strandat 1937.811 kb on + strandat 1937.811 kb on + strandat 1937.811 kb on + strandat 1937.812 kb on - strandat 1937.812 kb on - strandat 1937.812 kb on - strandat 1937.820 kb on + strandat 1937.823 kb on + strandat 1937.824 kb on - strandat 1937.937 kb on + strand, within Echvi_1666at 1937.938 kb on - strand, within Echvi_1666at 1937.981 kb on + strand, within Echvi_1666at 1938.069 kb on + strand, within Echvi_1666at 1938.069 kb on + strand, within Echvi_1666at 1938.069 kb on + strand, within Echvi_1666at 1938.070 kb on - strand, within Echvi_1666at 1938.070 kb on - strand, within Echvi_1666at 1938.074 kb on + strand, within Echvi_1666at 1938.074 kb on + strand, within Echvi_1666at 1938.216 kb on - strand, within Echvi_1666at 1938.219 kb on + strand, within Echvi_1666at 1938.219 kb on + strand, within Echvi_1666at 1938.220 kb on - strand, within Echvi_1666at 1938.220 kb on - strand, within Echvi_1666at 1938.251 kb on - strand, within Echvi_1666at 1938.251 kb on - strand, within Echvi_1666at 1938.251 kb on - strand, within Echvi_1666at 1938.478 kb on - strand, within Echvi_1666at 1938.513 kb on + strand, within Echvi_1666at 1938.576 kb on + strand, within Echvi_1666at 1938.680 kb on - strandat 1938.724 kb on + strandat 1938.724 kb on + strandat 1938.725 kb on - strandat 1938.725 kb on - strandat 1938.725 kb on - strandat 1938.725 kb on - strandat 1938.725 kb on - strandat 1938.725 kb on - strandat 1938.726 kb on + strandat 1938.727 kb on - strandat 1938.727 kb on - strandat 1938.728 kb on + strandat 1938.728 kb on + strandat 1938.729 kb on - strandat 1938.729 kb on - strandat 1938.733 kb on + strandat 1938.734 kb on - strandat 1938.734 kb on - strandat 1938.743 kb on - strandat 1938.744 kb on + strandat 1938.745 kb on - strandat 1938.745 kb on - strandat 1938.745 kb on - strandat 1938.745 kb on - strandat 1938.756 kb on + strandat 1938.759 kb on + strandat 1938.772 kb on + strandat 1938.796 kb on + strandat 1938.797 kb on - strandat 1938.803 kb on + strandat 1938.810 kb on - strandat 1938.885 kb on + strandat 1938.925 kb on + strandat 1938.925 kb on + strandat 1938.925 kb on + strandat 1938.926 kb on - strandat 1938.941 kb on - strandat 1939.066 kb on - strandat 1939.250 kb on - strand, within Echvi_1667at 1939.278 kb on + strand, within Echvi_1667at 1939.278 kb on + strand, within Echvi_1667at 1939.279 kb on - strand, within Echvi_1667at 1939.279 kb on - strand, within Echvi_1667at 1939.422 kb on + strand, within Echvi_1667at 1939.422 kb on + strand, within Echvi_1667at 1939.422 kb on + strand, within Echvi_1667at 1939.422 kb on + strand, within Echvi_1667at 1939.436 kb on + strand, within Echvi_1667at 1939.436 kb on + strand, within Echvi_1667at 1939.480 kb on + strand, within Echvi_1667at 1939.486 kb on - strand, within Echvi_1667at 1939.524 kb on + strand, within Echvi_1667at 1939.525 kb on - strand, within Echvi_1667at 1939.684 kb on - strand, within Echvi_1667at 1939.685 kb on + strand, within Echvi_1667at 1939.719 kb on + strand, within Echvi_1667at 1939.720 kb on - strand, within Echvi_1667at 1939.720 kb on - strand, within Echvi_1667

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
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1,936,855 + Echvi_1665 0.26 +0.6
1,936,855 + Echvi_1665 0.26 -0.0
1,936,861 - Echvi_1665 0.27 -0.2
1,936,870 + Echvi_1665 0.28 -0.5
1,936,870 + Echvi_1665 0.28 -0.6
1,936,871 - Echvi_1665 0.28 -0.2
1,936,889 + Echvi_1665 0.29 -0.1
1,936,889 + Echvi_1665 0.29 -0.9
1,936,922 + Echvi_1665 0.32 +1.6
1,936,922 + Echvi_1665 0.32 -0.4
1,936,929 + Echvi_1665 0.33 -0.9
1,936,987 + Echvi_1665 0.38 +1.7
1,936,987 + Echvi_1665 0.38 -0.4
1,937,285 + Echvi_1665 0.64 -1.3
1,937,385 - Echvi_1665 0.73 +1.6
1,937,385 - Echvi_1665 0.73 +1.0
1,937,385 - Echvi_1665 0.73 -0.7
1,937,436 + Echvi_1665 0.77 +0.1
1,937,559 + Echvi_1665 0.88 +0.4
1,937,559 + Echvi_1665 0.88 +0.3
1,937,559 + Echvi_1665 0.88 -0.2
1,937,560 - Echvi_1665 0.88 +0.1
1,937,560 - Echvi_1665 0.88 +0.4
1,937,560 - Echvi_1665 0.88 -2.6
1,937,563 + Echvi_1665 0.88 -1.1
1,937,563 + Echvi_1665 0.88 -2.1
1,937,563 + Echvi_1665 0.88 -0.1
1,937,563 + Echvi_1665 0.88 +1.8
1,937,563 + Echvi_1665 0.88 +0.4
1,937,563 + Echvi_1665 0.88 -1.1
1,937,564 - Echvi_1665 0.88 +0.9
1,937,564 - Echvi_1665 0.88 -0.1
1,937,564 - Echvi_1665 0.88 -0.2
1,937,564 - Echvi_1665 0.88 -1.3
1,937,564 - Echvi_1665 0.88 +0.1
1,937,564 - Echvi_1665 0.88 -2.4
1,937,588 + -0.2
1,937,693 + -2.0
1,937,699 + -0.5
1,937,811 + -1.1
1,937,811 + -1.2
1,937,811 + +0.8
1,937,812 - -1.1
1,937,812 - -0.4
1,937,812 - -0.7
1,937,820 + -0.2
1,937,823 + +0.1
1,937,824 - -0.6
1,937,937 + Echvi_1666 0.15 +0.2
1,937,938 - Echvi_1666 0.15 +0.5
1,937,981 + Echvi_1666 0.19 -1.4
1,938,069 + Echvi_1666 0.29 -0.3
1,938,069 + Echvi_1666 0.29 +0.5
1,938,069 + Echvi_1666 0.29 +0.1
1,938,070 - Echvi_1666 0.29 +0.4
1,938,070 - Echvi_1666 0.29 -0.8
1,938,074 + Echvi_1666 0.29 -0.3
1,938,074 + Echvi_1666 0.29 +1.0
1,938,216 - Echvi_1666 0.45 +1.0
1,938,219 + Echvi_1666 0.45 +0.4
1,938,219 + Echvi_1666 0.45 +0.8
1,938,220 - Echvi_1666 0.45 +0.0
1,938,220 - Echvi_1666 0.45 -0.5
1,938,251 - Echvi_1666 0.49 -0.2
1,938,251 - Echvi_1666 0.49 -0.1
1,938,251 - Echvi_1666 0.49 -0.6
1,938,478 - Echvi_1666 0.73 +1.5
1,938,513 + Echvi_1666 0.77 -0.2
1,938,576 + Echvi_1666 0.84 +1.0
1,938,680 - +0.8
1,938,724 + +0.9
1,938,724 + +0.3
1,938,725 - -0.7
1,938,725 - -0.4
1,938,725 - +0.2
1,938,725 - -1.5
1,938,725 - -0.1
1,938,725 - -0.4
1,938,726 + +0.8
1,938,727 - +2.1
1,938,727 - -1.0
1,938,728 + +2.1
1,938,728 + +0.9
1,938,729 - +0.8
1,938,729 - +0.5
1,938,733 + +0.4
1,938,734 - -0.4
1,938,734 - +1.5
1,938,743 - +0.5
1,938,744 + -1.6
1,938,745 - -0.7
1,938,745 - -1.1
1,938,745 - -0.4
1,938,745 - -1.1
1,938,756 + -0.0
1,938,759 + -0.2
1,938,772 + -0.3
1,938,796 + +0.1
1,938,797 - +1.6
1,938,803 + -1.6
1,938,810 - -0.1
1,938,885 + -0.1
1,938,925 + -1.6
1,938,925 + +0.3
1,938,925 + -0.1
1,938,926 - -0.4
1,938,941 - -0.9
1,939,066 - +0.6
1,939,250 - Echvi_1667 0.12 +2.4
1,939,278 + Echvi_1667 0.13 -0.7
1,939,278 + Echvi_1667 0.13 +0.5
1,939,279 - Echvi_1667 0.13 -0.2
1,939,279 - Echvi_1667 0.13 -0.7
1,939,422 + Echvi_1667 0.18 +0.1
1,939,422 + Echvi_1667 0.18 -0.4
1,939,422 + Echvi_1667 0.18 +2.1
1,939,422 + Echvi_1667 0.18 +0.8
1,939,436 + Echvi_1667 0.19 -0.5
1,939,436 + Echvi_1667 0.19 -0.7
1,939,480 + Echvi_1667 0.21 -0.4
1,939,486 - Echvi_1667 0.21 +0.5
1,939,524 + Echvi_1667 0.22 -0.9
1,939,525 - Echvi_1667 0.22 -0.9
1,939,684 - Echvi_1667 0.28 +1.2
1,939,685 + Echvi_1667 0.28 -0.6
1,939,719 + Echvi_1667 0.29 -1.2
1,939,720 - Echvi_1667 0.29 +0.7
1,939,720 - Echvi_1667 0.29 -1.7

Or see this region's nucleotide sequence