Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0381

Experiment: L-Methionine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0379 and Echvi_0380 are separated by 71 nucleotidesEchvi_0380 and Echvi_0381 overlap by 1 nucleotidesEchvi_0381 and Echvi_0382 overlap by 4 nucleotides Echvi_0379: Echvi_0379 - FOG: Transposase and inactivated derivatives, at 404,855 to 406,087 _0379 Echvi_0380: Echvi_0380 - hypothetical protein, at 406,159 to 406,518 _0380 Echvi_0381: Echvi_0381 - Restriction endonuclease S subunits, at 406,518 to 407,846 _0381 Echvi_0382: Echvi_0382 - Type I restriction-modification system methyltransferase subunit, at 407,843 to 409,279 _0382 Position (kb) 406 407 408Strain fitness (log2 ratio) -2 -1 0 1 2 3at 406.200 kb on + strand, within Echvi_0380at 406.215 kb on + strand, within Echvi_0380at 406.220 kb on + strand, within Echvi_0380at 406.262 kb on + strand, within Echvi_0380at 406.263 kb on - strand, within Echvi_0380at 406.277 kb on + strand, within Echvi_0380at 406.278 kb on - strand, within Echvi_0380at 406.289 kb on - strand, within Echvi_0380at 406.295 kb on - strand, within Echvi_0380at 406.368 kb on + strand, within Echvi_0380at 406.393 kb on - strand, within Echvi_0380at 406.415 kb on - strand, within Echvi_0380at 406.417 kb on - strand, within Echvi_0380at 406.427 kb on + strand, within Echvi_0380at 406.428 kb on - strand, within Echvi_0380at 406.428 kb on - strand, within Echvi_0380at 406.472 kb on + strand, within Echvi_0380at 406.479 kb on + strand, within Echvi_0380at 406.481 kb on + strand, within Echvi_0380at 406.481 kb on + strand, within Echvi_0380at 406.481 kb on + strand, within Echvi_0380at 406.604 kb on + strandat 406.604 kb on + strandat 406.605 kb on - strandat 406.627 kb on + strandat 406.641 kb on - strandat 406.645 kb on - strandat 406.645 kb on - strandat 406.695 kb on + strand, within Echvi_0381at 406.695 kb on + strand, within Echvi_0381at 406.695 kb on + strand, within Echvi_0381at 406.695 kb on + strand, within Echvi_0381at 406.696 kb on - strand, within Echvi_0381at 406.696 kb on - strand, within Echvi_0381at 406.696 kb on - strand, within Echvi_0381at 406.696 kb on - strand, within Echvi_0381at 406.860 kb on + strand, within Echvi_0381at 406.860 kb on + strand, within Echvi_0381at 406.860 kb on + strand, within Echvi_0381at 406.860 kb on + strand, within Echvi_0381at 406.860 kb on + strand, within Echvi_0381at 406.904 kb on + strand, within Echvi_0381at 406.905 kb on - strand, within Echvi_0381at 406.916 kb on + strand, within Echvi_0381at 406.916 kb on + strand, within Echvi_0381at 406.916 kb on + strand, within Echvi_0381at 406.962 kb on + strand, within Echvi_0381at 406.963 kb on - strand, within Echvi_0381at 406.986 kb on - strand, within Echvi_0381at 406.989 kb on + strand, within Echvi_0381at 406.990 kb on - strand, within Echvi_0381at 406.990 kb on - strand, within Echvi_0381at 406.993 kb on - strand, within Echvi_0381at 407.074 kb on + strand, within Echvi_0381at 407.082 kb on - strand, within Echvi_0381at 407.103 kb on - strand, within Echvi_0381at 407.129 kb on + strand, within Echvi_0381at 407.165 kb on + strand, within Echvi_0381at 407.301 kb on - strand, within Echvi_0381at 407.301 kb on - strand, within Echvi_0381at 407.301 kb on - strand, within Echvi_0381at 407.391 kb on - strand, within Echvi_0381at 407.425 kb on - strand, within Echvi_0381at 407.481 kb on + strand, within Echvi_0381at 407.482 kb on - strand, within Echvi_0381at 407.510 kb on + strand, within Echvi_0381at 407.541 kb on + strand, within Echvi_0381at 407.542 kb on - strand, within Echvi_0381at 407.573 kb on + strand, within Echvi_0381at 407.574 kb on - strand, within Echvi_0381at 407.641 kb on - strand, within Echvi_0381at 407.693 kb on + strand, within Echvi_0381at 407.724 kb on - strandat 407.748 kb on + strandat 407.748 kb on + strandat 407.765 kb on + strandat 407.765 kb on + strandat 407.824 kb on - strandat 407.849 kb on + strandat 407.862 kb on - strandat 407.863 kb on + strandat 407.863 kb on + strandat 407.863 kb on + strandat 407.864 kb on - strandat 407.870 kb on + strandat 407.870 kb on + strandat 407.870 kb on + strandat 407.870 kb on + strandat 407.870 kb on + strandat 407.870 kb on + strandat 407.871 kb on - strandat 407.873 kb on + strandat 407.873 kb on + strandat 407.873 kb on + strandat 407.873 kb on + strandat 407.873 kb on + strandat 407.873 kb on + strandat 407.874 kb on - strandat 407.874 kb on - strandat 407.874 kb on - strandat 407.916 kb on - strandat 407.972 kb on + strandat 407.972 kb on + strandat 407.973 kb on - strandat 407.992 kb on + strand, within Echvi_0382at 407.992 kb on + strand, within Echvi_0382at 407.993 kb on - strand, within Echvi_0382at 408.074 kb on + strand, within Echvi_0382at 408.075 kb on - strand, within Echvi_0382at 408.094 kb on + strand, within Echvi_0382at 408.098 kb on - strand, within Echvi_0382at 408.099 kb on + strand, within Echvi_0382at 408.099 kb on + strand, within Echvi_0382at 408.100 kb on - strand, within Echvi_0382at 408.100 kb on - strand, within Echvi_0382at 408.132 kb on + strand, within Echvi_0382at 408.132 kb on + strand, within Echvi_0382at 408.133 kb on - strand, within Echvi_0382at 408.133 kb on - strand, within Echvi_0382at 408.133 kb on - strand, within Echvi_0382at 408.135 kb on + strand, within Echvi_0382at 408.135 kb on + strand, within Echvi_0382at 408.135 kb on + strand, within Echvi_0382at 408.136 kb on - strand, within Echvi_0382at 408.140 kb on + strand, within Echvi_0382at 408.140 kb on + strand, within Echvi_0382at 408.140 kb on + strand, within Echvi_0382at 408.141 kb on - strand, within Echvi_0382at 408.141 kb on - strand, within Echvi_0382at 408.193 kb on + strand, within Echvi_0382at 408.193 kb on + strand, within Echvi_0382at 408.198 kb on + strand, within Echvi_0382at 408.198 kb on + strand, within Echvi_0382at 408.245 kb on - strand, within Echvi_0382at 408.269 kb on + strand, within Echvi_0382at 408.270 kb on - strand, within Echvi_0382at 408.329 kb on - strand, within Echvi_0382at 408.329 kb on - strand, within Echvi_0382at 408.344 kb on + strand, within Echvi_0382at 408.345 kb on - strand, within Echvi_0382at 408.421 kb on + strand, within Echvi_0382at 408.422 kb on - strand, within Echvi_0382at 408.486 kb on + strand, within Echvi_0382at 408.487 kb on - strand, within Echvi_0382at 408.541 kb on + strand, within Echvi_0382at 408.541 kb on + strand, within Echvi_0382at 408.541 kb on + strand, within Echvi_0382at 408.576 kb on + strand, within Echvi_0382at 408.591 kb on + strand, within Echvi_0382at 408.592 kb on - strand, within Echvi_0382at 408.617 kb on + strand, within Echvi_0382at 408.617 kb on + strand, within Echvi_0382at 408.619 kb on + strand, within Echvi_0382at 408.619 kb on + strand, within Echvi_0382at 408.620 kb on - strand, within Echvi_0382at 408.620 kb on - strand, within Echvi_0382at 408.620 kb on - strand, within Echvi_0382at 408.620 kb on - strand, within Echvi_0382at 408.635 kb on + strand, within Echvi_0382at 408.636 kb on - strand, within Echvi_0382at 408.641 kb on - strand, within Echvi_0382at 408.668 kb on - strand, within Echvi_0382at 408.681 kb on + strand, within Echvi_0382at 408.700 kb on + strand, within Echvi_0382at 408.700 kb on + strand, within Echvi_0382at 408.700 kb on + strand, within Echvi_0382at 408.700 kb on + strand, within Echvi_0382at 408.775 kb on - strand, within Echvi_0382

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Methionine (N)
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406,200 + Echvi_0380 0.11 -0.5
406,215 + Echvi_0380 0.16 +0.0
406,220 + Echvi_0380 0.17 +1.7
406,262 + Echvi_0380 0.29 +1.1
406,263 - Echvi_0380 0.29 -1.2
406,277 + Echvi_0380 0.33 +0.4
406,278 - Echvi_0380 0.33 +0.5
406,289 - Echvi_0380 0.36 -0.2
406,295 - Echvi_0380 0.38 +0.7
406,368 + Echvi_0380 0.58 -1.4
406,393 - Echvi_0380 0.65 -0.1
406,415 - Echvi_0380 0.71 +0.3
406,417 - Echvi_0380 0.72 -0.0
406,427 + Echvi_0380 0.74 +0.8
406,428 - Echvi_0380 0.75 -0.3
406,428 - Echvi_0380 0.75 -1.4
406,472 + Echvi_0380 0.87 -1.0
406,479 + Echvi_0380 0.89 +0.1
406,481 + Echvi_0380 0.89 -2.0
406,481 + Echvi_0380 0.89 +0.2
406,481 + Echvi_0380 0.89 -1.7
406,604 + +0.6
406,604 + -0.0
406,605 - +0.2
406,627 + -0.6
406,641 - +2.4
406,645 - +2.5
406,645 - -0.1
406,695 + Echvi_0381 0.13 -0.8
406,695 + Echvi_0381 0.13 +0.3
406,695 + Echvi_0381 0.13 -0.9
406,695 + Echvi_0381 0.13 +0.1
406,696 - Echvi_0381 0.13 +0.2
406,696 - Echvi_0381 0.13 -1.5
406,696 - Echvi_0381 0.13 +1.4
406,696 - Echvi_0381 0.13 +1.1
406,860 + Echvi_0381 0.26 -0.2
406,860 + Echvi_0381 0.26 +1.4
406,860 + Echvi_0381 0.26 -0.3
406,860 + Echvi_0381 0.26 +1.8
406,860 + Echvi_0381 0.26 -0.6
406,904 + Echvi_0381 0.29 +1.7
406,905 - Echvi_0381 0.29 +1.6
406,916 + Echvi_0381 0.30 +0.6
406,916 + Echvi_0381 0.30 -0.4
406,916 + Echvi_0381 0.30 -0.5
406,962 + Echvi_0381 0.33 +0.3
406,963 - Echvi_0381 0.33 -1.2
406,986 - Echvi_0381 0.35 -0.9
406,989 + Echvi_0381 0.35 +1.8
406,990 - Echvi_0381 0.36 -0.3
406,990 - Echvi_0381 0.36 +0.3
406,993 - Echvi_0381 0.36 -0.5
407,074 + Echvi_0381 0.42 -0.6
407,082 - Echvi_0381 0.42 -0.0
407,103 - Echvi_0381 0.44 +0.0
407,129 + Echvi_0381 0.46 +0.7
407,165 + Echvi_0381 0.49 +0.2
407,301 - Echvi_0381 0.59 -0.4
407,301 - Echvi_0381 0.59 +0.9
407,301 - Echvi_0381 0.59 +0.1
407,391 - Echvi_0381 0.66 +1.1
407,425 - Echvi_0381 0.68 +0.4
407,481 + Echvi_0381 0.72 +0.4
407,482 - Echvi_0381 0.73 -0.6
407,510 + Echvi_0381 0.75 -0.8
407,541 + Echvi_0381 0.77 -2.0
407,542 - Echvi_0381 0.77 +0.3
407,573 + Echvi_0381 0.79 +0.2
407,574 - Echvi_0381 0.79 -2.5
407,641 - Echvi_0381 0.84 +0.6
407,693 + Echvi_0381 0.88 +1.7
407,724 - +0.7
407,748 + +1.4
407,748 + +0.0
407,765 + -0.4
407,765 + +1.1
407,824 - +0.4
407,849 + -0.1
407,862 - -0.1
407,863 + +0.2
407,863 + -0.4
407,863 + +0.0
407,864 - +0.1
407,870 + +0.8
407,870 + -0.7
407,870 + -0.5
407,870 + -0.6
407,870 + +0.2
407,870 + +0.7
407,871 - -1.5
407,873 + +1.1
407,873 + +1.2
407,873 + +1.0
407,873 + +0.3
407,873 + +0.7
407,873 + +0.8
407,874 - -0.3
407,874 - -1.1
407,874 - -0.2
407,916 - -1.7
407,972 + +0.0
407,972 + +0.5
407,973 - -0.2
407,992 + Echvi_0382 0.10 -1.7
407,992 + Echvi_0382 0.10 +3.4
407,993 - Echvi_0382 0.10 -0.9
408,074 + Echvi_0382 0.16 +0.3
408,075 - Echvi_0382 0.16 +0.3
408,094 + Echvi_0382 0.17 +1.1
408,098 - Echvi_0382 0.18 -1.0
408,099 + Echvi_0382 0.18 +0.1
408,099 + Echvi_0382 0.18 -1.2
408,100 - Echvi_0382 0.18 -0.7
408,100 - Echvi_0382 0.18 -0.6
408,132 + Echvi_0382 0.20 +2.4
408,132 + Echvi_0382 0.20 -1.0
408,133 - Echvi_0382 0.20 -0.5
408,133 - Echvi_0382 0.20 -1.0
408,133 - Echvi_0382 0.20 -0.6
408,135 + Echvi_0382 0.20 +0.1
408,135 + Echvi_0382 0.20 +1.3
408,135 + Echvi_0382 0.20 +1.0
408,136 - Echvi_0382 0.20 +0.4
408,140 + Echvi_0382 0.21 -0.3
408,140 + Echvi_0382 0.21 +1.8
408,140 + Echvi_0382 0.21 +0.5
408,141 - Echvi_0382 0.21 -0.2
408,141 - Echvi_0382 0.21 +0.0
408,193 + Echvi_0382 0.24 +1.0
408,193 + Echvi_0382 0.24 -0.2
408,198 + Echvi_0382 0.25 -0.0
408,198 + Echvi_0382 0.25 +0.8
408,245 - Echvi_0382 0.28 -0.6
408,269 + Echvi_0382 0.30 -1.3
408,270 - Echvi_0382 0.30 -1.0
408,329 - Echvi_0382 0.34 +0.4
408,329 - Echvi_0382 0.34 +0.5
408,344 + Echvi_0382 0.35 -0.1
408,345 - Echvi_0382 0.35 +0.0
408,421 + Echvi_0382 0.40 -0.5
408,422 - Echvi_0382 0.40 +0.5
408,486 + Echvi_0382 0.45 +0.1
408,487 - Echvi_0382 0.45 +0.3
408,541 + Echvi_0382 0.49 +1.5
408,541 + Echvi_0382 0.49 +0.6
408,541 + Echvi_0382 0.49 -0.1
408,576 + Echvi_0382 0.51 +0.2
408,591 + Echvi_0382 0.52 -0.3
408,592 - Echvi_0382 0.52 +2.1
408,617 + Echvi_0382 0.54 -0.4
408,617 + Echvi_0382 0.54 -0.2
408,619 + Echvi_0382 0.54 -1.2
408,619 + Echvi_0382 0.54 -0.0
408,620 - Echvi_0382 0.54 -0.2
408,620 - Echvi_0382 0.54 +0.3
408,620 - Echvi_0382 0.54 +0.5
408,620 - Echvi_0382 0.54 +0.6
408,635 + Echvi_0382 0.55 +0.1
408,636 - Echvi_0382 0.55 -1.2
408,641 - Echvi_0382 0.56 -0.6
408,668 - Echvi_0382 0.57 +2.1
408,681 + Echvi_0382 0.58 +3.4
408,700 + Echvi_0382 0.60 +1.5
408,700 + Echvi_0382 0.60 -0.2
408,700 + Echvi_0382 0.60 +0.8
408,700 + Echvi_0382 0.60 +0.2
408,775 - Echvi_0382 0.65 -1.5

Or see this region's nucleotide sequence