Experiment: L-Methionine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0177 and Echvi_0178 are separated by 2 nucleotides Echvi_0178 and Echvi_0179 are separated by 465 nucleotides Echvi_0179 and Echvi_0180 are separated by 50 nucleotides
Echvi_0177: Echvi_0177 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 193,524 to 195,848
_0177
Echvi_0178: Echvi_0178 - Bacteroidetes-specific putative membrane protein, at 195,851 to 196,819
_0178
Echvi_0179: Echvi_0179 - Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases, at 197,285 to 197,680
_0179
Echvi_0180: Echvi_0180 - transcription elongation factor GreA, at 197,731 to 198,204
_0180
Position (kb) 195
196
197 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 194.870 kb on + strand, within Echvi_0177 at 194.875 kb on + strand, within Echvi_0177 at 194.875 kb on + strand, within Echvi_0177 at 194.887 kb on + strand, within Echvi_0177 at 194.888 kb on - strand, within Echvi_0177 at 194.888 kb on - strand, within Echvi_0177 at 194.932 kb on + strand, within Echvi_0177 at 194.932 kb on + strand, within Echvi_0177 at 194.959 kb on + strand, within Echvi_0177 at 195.002 kb on - strand, within Echvi_0177 at 195.008 kb on - strand, within Echvi_0177 at 195.013 kb on + strand, within Echvi_0177 at 195.013 kb on + strand, within Echvi_0177 at 195.036 kb on - strand, within Echvi_0177 at 195.036 kb on - strand, within Echvi_0177 at 195.036 kb on - strand, within Echvi_0177 at 195.046 kb on + strand, within Echvi_0177 at 195.049 kb on + strand, within Echvi_0177 at 195.050 kb on - strand, within Echvi_0177 at 195.145 kb on - strand, within Echvi_0177 at 195.170 kb on + strand, within Echvi_0177 at 195.171 kb on - strand, within Echvi_0177 at 195.200 kb on + strand, within Echvi_0177 at 195.201 kb on - strand, within Echvi_0177 at 195.215 kb on + strand, within Echvi_0177 at 195.226 kb on + strand, within Echvi_0177 at 195.234 kb on + strand, within Echvi_0177 at 195.238 kb on + strand, within Echvi_0177 at 195.239 kb on - strand, within Echvi_0177 at 195.259 kb on + strand, within Echvi_0177 at 195.260 kb on - strand, within Echvi_0177 at 195.275 kb on - strand, within Echvi_0177 at 195.300 kb on + strand, within Echvi_0177 at 195.309 kb on + strand, within Echvi_0177 at 195.310 kb on - strand, within Echvi_0177 at 195.352 kb on + strand, within Echvi_0177 at 195.357 kb on - strand, within Echvi_0177 at 195.383 kb on + strand, within Echvi_0177 at 195.384 kb on - strand, within Echvi_0177 at 195.384 kb on - strand, within Echvi_0177 at 195.410 kb on + strand, within Echvi_0177 at 195.411 kb on - strand, within Echvi_0177 at 195.459 kb on - strand, within Echvi_0177 at 195.464 kb on + strand, within Echvi_0177 at 195.464 kb on + strand, within Echvi_0177 at 195.464 kb on + strand, within Echvi_0177 at 195.464 kb on + strand, within Echvi_0177 at 195.464 kb on + strand, within Echvi_0177 at 195.464 kb on + strand, within Echvi_0177 at 195.465 kb on - strand, within Echvi_0177 at 195.465 kb on - strand, within Echvi_0177 at 195.465 kb on - strand, within Echvi_0177 at 195.466 kb on + strand, within Echvi_0177 at 195.466 kb on + strand, within Echvi_0177 at 195.466 kb on + strand, within Echvi_0177 at 195.466 kb on + strand, within Echvi_0177 at 195.476 kb on + strand, within Echvi_0177 at 195.494 kb on + strand, within Echvi_0177 at 195.519 kb on + strand, within Echvi_0177 at 195.519 kb on + strand, within Echvi_0177 at 195.600 kb on + strand, within Echvi_0177 at 195.710 kb on + strand at 195.710 kb on + strand at 195.712 kb on + strand at 195.712 kb on + strand at 195.713 kb on - strand at 195.727 kb on - strand at 195.727 kb on - strand at 195.727 kb on - strand at 195.731 kb on + strand at 195.731 kb on + strand at 195.731 kb on + strand at 195.733 kb on + strand at 195.733 kb on + strand at 195.733 kb on + strand at 195.734 kb on - strand at 195.820 kb on - strand at 195.824 kb on + strand at 195.825 kb on - strand at 195.825 kb on - strand at 195.829 kb on - strand at 195.829 kb on - strand at 195.897 kb on + strand at 195.897 kb on + strand at 195.898 kb on - strand at 195.898 kb on - strand at 195.934 kb on + strand at 195.935 kb on - strand at 195.955 kb on + strand, within Echvi_0178 at 195.955 kb on + strand, within Echvi_0178 at 195.955 kb on + strand, within Echvi_0178 at 195.956 kb on - strand, within Echvi_0178 at 195.956 kb on - strand, within Echvi_0178 at 195.963 kb on + strand, within Echvi_0178 at 195.974 kb on + strand, within Echvi_0178 at 195.974 kb on + strand, within Echvi_0178 at 196.009 kb on + strand, within Echvi_0178 at 196.107 kb on + strand, within Echvi_0178 at 196.108 kb on - strand, within Echvi_0178 at 196.139 kb on - strand, within Echvi_0178 at 196.139 kb on - strand, within Echvi_0178 at 196.228 kb on - strand, within Echvi_0178 at 196.228 kb on - strand, within Echvi_0178 at 196.246 kb on - strand, within Echvi_0178 at 196.253 kb on + strand, within Echvi_0178 at 196.279 kb on + strand, within Echvi_0178 at 196.327 kb on + strand, within Echvi_0178 at 196.327 kb on + strand, within Echvi_0178 at 196.331 kb on - strand, within Echvi_0178 at 196.343 kb on + strand, within Echvi_0178 at 196.349 kb on + strand, within Echvi_0178 at 196.349 kb on + strand, within Echvi_0178 at 196.350 kb on - strand, within Echvi_0178 at 196.350 kb on - strand, within Echvi_0178 at 196.350 kb on - strand, within Echvi_0178 at 196.354 kb on + strand, within Echvi_0178 at 196.364 kb on + strand, within Echvi_0178 at 196.406 kb on + strand, within Echvi_0178 at 196.420 kb on + strand, within Echvi_0178 at 196.426 kb on - strand, within Echvi_0178 at 196.437 kb on + strand, within Echvi_0178 at 196.506 kb on + strand, within Echvi_0178 at 196.506 kb on + strand, within Echvi_0178 at 196.507 kb on - strand, within Echvi_0178 at 196.507 kb on - strand, within Echvi_0178 at 196.507 kb on - strand, within Echvi_0178 at 196.579 kb on + strand, within Echvi_0178 at 196.656 kb on + strand, within Echvi_0178 at 196.657 kb on - strand, within Echvi_0178 at 196.672 kb on - strand, within Echvi_0178 at 196.672 kb on - strand, within Echvi_0178 at 196.672 kb on - strand, within Echvi_0178 at 196.687 kb on - strand, within Echvi_0178 at 196.687 kb on - strand, within Echvi_0178 at 196.708 kb on + strand, within Echvi_0178 at 196.709 kb on - strand, within Echvi_0178 at 196.709 kb on - strand, within Echvi_0178 at 196.724 kb on + strand at 196.726 kb on + strand at 196.726 kb on + strand at 196.727 kb on - strand at 196.728 kb on + strand at 196.728 kb on + strand at 196.729 kb on - strand at 196.766 kb on + strand at 196.853 kb on + strand at 197.003 kb on + strand at 197.003 kb on + strand at 197.011 kb on + strand at 197.011 kb on + strand at 197.274 kb on - strand at 197.296 kb on + strand at 197.296 kb on + strand at 197.297 kb on - strand at 197.315 kb on + strand at 197.315 kb on + strand at 197.316 kb on - strand at 197.344 kb on + strand, within Echvi_0179 at 197.350 kb on + strand, within Echvi_0179 at 197.351 kb on - strand, within Echvi_0179 at 197.426 kb on + strand, within Echvi_0179 at 197.449 kb on + strand, within Echvi_0179 at 197.450 kb on - strand, within Echvi_0179 at 197.539 kb on - strand, within Echvi_0179 at 197.539 kb on - strand, within Echvi_0179 at 197.543 kb on + strand, within Echvi_0179 at 197.544 kb on - strand, within Echvi_0179 at 197.554 kb on + strand, within Echvi_0179 at 197.554 kb on + strand, within Echvi_0179 at 197.555 kb on - strand, within Echvi_0179 at 197.558 kb on + strand, within Echvi_0179 at 197.633 kb on - strand, within Echvi_0179 at 197.633 kb on - strand, within Echvi_0179 at 197.711 kb on - strand at 197.732 kb on + strand at 197.739 kb on + strand at 197.739 kb on + strand at 197.739 kb on + strand at 197.782 kb on + strand, within Echvi_0180
Per-strain Table
Position Strand Gene LocusTag Fraction L-Methionine (N) remove 194,870 + Echvi_0177 0.58 +0.2 194,875 + Echvi_0177 0.58 -0.2 194,875 + Echvi_0177 0.58 -0.6 194,887 + Echvi_0177 0.59 -1.7 194,888 - Echvi_0177 0.59 +0.5 194,888 - Echvi_0177 0.59 +2.3 194,932 + Echvi_0177 0.61 +0.8 194,932 + Echvi_0177 0.61 +1.1 194,959 + Echvi_0177 0.62 +0.3 195,002 - Echvi_0177 0.64 -0.2 195,008 - Echvi_0177 0.64 -1.2 195,013 + Echvi_0177 0.64 -0.1 195,013 + Echvi_0177 0.64 -0.2 195,036 - Echvi_0177 0.65 +1.6 195,036 - Echvi_0177 0.65 -0.6 195,036 - Echvi_0177 0.65 +0.3 195,046 + Echvi_0177 0.65 +0.2 195,049 + Echvi_0177 0.66 -0.5 195,050 - Echvi_0177 0.66 -0.3 195,145 - Echvi_0177 0.70 -0.0 195,170 + Echvi_0177 0.71 -1.4 195,171 - Echvi_0177 0.71 -0.7 195,200 + Echvi_0177 0.72 -0.1 195,201 - Echvi_0177 0.72 +0.5 195,215 + Echvi_0177 0.73 -0.5 195,226 + Echvi_0177 0.73 -2.1 195,234 + Echvi_0177 0.74 -0.1 195,238 + Echvi_0177 0.74 -1.5 195,239 - Echvi_0177 0.74 -1.4 195,259 + Echvi_0177 0.75 +0.5 195,260 - Echvi_0177 0.75 -0.2 195,275 - Echvi_0177 0.75 +0.8 195,300 + Echvi_0177 0.76 -0.3 195,309 + Echvi_0177 0.77 +0.2 195,310 - Echvi_0177 0.77 +1.4 195,352 + Echvi_0177 0.79 +1.0 195,357 - Echvi_0177 0.79 +1.2 195,383 + Echvi_0177 0.80 +0.4 195,384 - Echvi_0177 0.80 -1.0 195,384 - Echvi_0177 0.80 +0.4 195,410 + Echvi_0177 0.81 -0.1 195,411 - Echvi_0177 0.81 -0.1 195,459 - Echvi_0177 0.83 -2.1 195,464 + Echvi_0177 0.83 +0.4 195,464 + Echvi_0177 0.83 -1.2 195,464 + Echvi_0177 0.83 +0.2 195,464 + Echvi_0177 0.83 +0.2 195,464 + Echvi_0177 0.83 +4.1 195,464 + Echvi_0177 0.83 -0.5 195,465 - Echvi_0177 0.83 -0.8 195,465 - Echvi_0177 0.83 -0.6 195,465 - Echvi_0177 0.83 -0.6 195,466 + Echvi_0177 0.84 -0.9 195,466 + Echvi_0177 0.84 -1.8 195,466 + Echvi_0177 0.84 +0.6 195,466 + Echvi_0177 0.84 -0.4 195,476 + Echvi_0177 0.84 +0.1 195,494 + Echvi_0177 0.85 -0.2 195,519 + Echvi_0177 0.86 -0.7 195,519 + Echvi_0177 0.86 +0.1 195,600 + Echvi_0177 0.89 -0.1 195,710 + -0.6 195,710 + +0.2 195,712 + -1.4 195,712 + -1.6 195,713 - +0.3 195,727 - +0.8 195,727 - -0.9 195,727 - -0.9 195,731 + -0.1 195,731 + -0.1 195,731 + +0.8 195,733 + +0.6 195,733 + -1.0 195,733 + +1.5 195,734 - +1.1 195,820 - -0.1 195,824 + +1.8 195,825 - +0.3 195,825 - +0.3 195,829 - -0.5 195,829 - -1.9 195,897 + +0.8 195,897 + +1.2 195,898 - -1.9 195,898 - -1.1 195,934 + +2.7 195,935 - -0.4 195,955 + Echvi_0178 0.11 -0.2 195,955 + Echvi_0178 0.11 +0.2 195,955 + Echvi_0178 0.11 -1.3 195,956 - Echvi_0178 0.11 +0.2 195,956 - Echvi_0178 0.11 -0.3 195,963 + Echvi_0178 0.12 +1.4 195,974 + Echvi_0178 0.13 +1.9 195,974 + Echvi_0178 0.13 +0.3 196,009 + Echvi_0178 0.16 +0.4 196,107 + Echvi_0178 0.26 -1.6 196,108 - Echvi_0178 0.27 +0.1 196,139 - Echvi_0178 0.30 -1.7 196,139 - Echvi_0178 0.30 -0.2 196,228 - Echvi_0178 0.39 -2.4 196,228 - Echvi_0178 0.39 -0.3 196,246 - Echvi_0178 0.41 +1.1 196,253 + Echvi_0178 0.41 -2.9 196,279 + Echvi_0178 0.44 -0.4 196,327 + Echvi_0178 0.49 -1.7 196,327 + Echvi_0178 0.49 +1.4 196,331 - Echvi_0178 0.50 -0.8 196,343 + Echvi_0178 0.51 -0.7 196,349 + Echvi_0178 0.51 +0.3 196,349 + Echvi_0178 0.51 +0.3 196,350 - Echvi_0178 0.51 +0.5 196,350 - Echvi_0178 0.51 -0.2 196,350 - Echvi_0178 0.51 +0.1 196,354 + Echvi_0178 0.52 -0.1 196,364 + Echvi_0178 0.53 -0.6 196,406 + Echvi_0178 0.57 +0.2 196,420 + Echvi_0178 0.59 +0.8 196,426 - Echvi_0178 0.59 +0.2 196,437 + Echvi_0178 0.60 +0.5 196,506 + Echvi_0178 0.68 +0.2 196,506 + Echvi_0178 0.68 +0.5 196,507 - Echvi_0178 0.68 +0.3 196,507 - Echvi_0178 0.68 -0.8 196,507 - Echvi_0178 0.68 -0.2 196,579 + Echvi_0178 0.75 +0.3 196,656 + Echvi_0178 0.83 +0.5 196,657 - Echvi_0178 0.83 -0.0 196,672 - Echvi_0178 0.85 +0.4 196,672 - Echvi_0178 0.85 -0.7 196,672 - Echvi_0178 0.85 -1.1 196,687 - Echvi_0178 0.86 +0.9 196,687 - Echvi_0178 0.86 -0.1 196,708 + Echvi_0178 0.88 -0.4 196,709 - Echvi_0178 0.89 -0.1 196,709 - Echvi_0178 0.89 +0.9 196,724 + -0.8 196,726 + +0.8 196,726 + -0.1 196,727 - -0.7 196,728 + -0.1 196,728 + +1.0 196,729 - +0.4 196,766 + +0.1 196,853 + +0.1 197,003 + -0.5 197,003 + +0.7 197,011 + +0.6 197,011 + +0.8 197,274 - -1.6 197,296 + +0.2 197,296 + +0.6 197,297 - -2.4 197,315 + -1.1 197,315 + -1.1 197,316 - +0.5 197,344 + Echvi_0179 0.15 +1.0 197,350 + Echvi_0179 0.16 +0.5 197,351 - Echvi_0179 0.17 +0.5 197,426 + Echvi_0179 0.36 +1.8 197,449 + Echvi_0179 0.41 +1.6 197,450 - Echvi_0179 0.42 +0.5 197,539 - Echvi_0179 0.64 +2.1 197,539 - Echvi_0179 0.64 -0.8 197,543 + Echvi_0179 0.65 -0.3 197,544 - Echvi_0179 0.65 -1.1 197,554 + Echvi_0179 0.68 +1.1 197,554 + Echvi_0179 0.68 +0.4 197,555 - Echvi_0179 0.68 -0.4 197,558 + Echvi_0179 0.69 +0.3 197,633 - Echvi_0179 0.88 +0.4 197,633 - Echvi_0179 0.88 +0.2 197,711 - +2.1 197,732 + +0.4 197,739 + +3.1 197,739 + +1.1 197,739 + -0.1 197,782 + Echvi_0180 0.11 +3.9
Or see this region's nucleotide sequence