Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2317

Experiment: m.b. 5-Hydroxymethylfurfural 8 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_2316 and B158DRAFT_2317 are separated by 28 nucleotidesB158DRAFT_2317 and B158DRAFT_2318 overlap by 11 nucleotidesB158DRAFT_2318 and B158DRAFT_2319 are separated by 18 nucleotides B158DRAFT_2316: B158DRAFT_2316 - Signal transduction histidine kinase, at 477,523 to 479,535 _2316 B158DRAFT_2317: B158DRAFT_2317 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 479,564 to 482,602 _2317 B158DRAFT_2318: B158DRAFT_2318 - 2-phosphoglycolate phosphatase, prokaryotic, at 482,592 to 483,257 _2318 B158DRAFT_2319: B158DRAFT_2319 - 3-demethylubiquinone-9 3-methyltransferase (EC 2.1.1.64), at 483,276 to 483,995 _2319 Position (kb) 479 480 481 482 483Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 478.570 kb on + strand, within B158DRAFT_2316at 478.578 kb on + strand, within B158DRAFT_2316at 478.578 kb on + strand, within B158DRAFT_2316at 478.586 kb on - strand, within B158DRAFT_2316at 478.605 kb on + strand, within B158DRAFT_2316at 478.638 kb on + strand, within B158DRAFT_2316at 478.643 kb on + strand, within B158DRAFT_2316at 478.812 kb on - strand, within B158DRAFT_2316at 478.825 kb on + strand, within B158DRAFT_2316at 478.838 kb on + strand, within B158DRAFT_2316at 478.838 kb on + strand, within B158DRAFT_2316at 478.838 kb on + strand, within B158DRAFT_2316at 478.838 kb on + strand, within B158DRAFT_2316at 478.838 kb on + strand, within B158DRAFT_2316at 478.838 kb on + strand, within B158DRAFT_2316at 478.838 kb on + strand, within B158DRAFT_2316at 478.838 kb on + strand, within B158DRAFT_2316at 478.846 kb on - strand, within B158DRAFT_2316at 478.856 kb on - strand, within B158DRAFT_2316at 478.894 kb on - strand, within B158DRAFT_2316at 478.989 kb on + strand, within B158DRAFT_2316at 478.989 kb on + strand, within B158DRAFT_2316at 478.989 kb on + strand, within B158DRAFT_2316at 478.997 kb on - strand, within B158DRAFT_2316at 478.997 kb on - strand, within B158DRAFT_2316at 478.997 kb on - strand, within B158DRAFT_2316at 478.997 kb on - strand, within B158DRAFT_2316at 478.997 kb on - strand, within B158DRAFT_2316at 478.999 kb on + strand, within B158DRAFT_2316at 478.999 kb on + strand, within B158DRAFT_2316at 478.999 kb on + strand, within B158DRAFT_2316at 478.999 kb on + strand, within B158DRAFT_2316at 478.999 kb on + strand, within B158DRAFT_2316at 478.999 kb on + strand, within B158DRAFT_2316at 478.999 kb on + strand, within B158DRAFT_2316at 479.007 kb on - strand, within B158DRAFT_2316at 479.007 kb on - strand, within B158DRAFT_2316at 479.007 kb on - strand, within B158DRAFT_2316at 479.007 kb on - strand, within B158DRAFT_2316at 479.007 kb on - strand, within B158DRAFT_2316at 479.007 kb on - strand, within B158DRAFT_2316at 479.007 kb on - strand, within B158DRAFT_2316at 479.050 kb on - strand, within B158DRAFT_2316at 479.115 kb on + strand, within B158DRAFT_2316at 479.162 kb on + strand, within B158DRAFT_2316at 479.201 kb on - strand, within B158DRAFT_2316at 479.287 kb on + strand, within B158DRAFT_2316at 479.324 kb on + strand, within B158DRAFT_2316at 479.378 kb on - strandat 479.410 kb on - strandat 479.416 kb on - strandat 479.530 kb on + strandat 479.537 kb on - strandat 479.537 kb on - strandat 479.632 kb on + strandat 479.647 kb on + strandat 479.708 kb on + strandat 479.814 kb on - strandat 479.878 kb on - strand, within B158DRAFT_2317at 479.878 kb on - strand, within B158DRAFT_2317at 479.883 kb on - strand, within B158DRAFT_2317at 480.055 kb on + strand, within B158DRAFT_2317at 480.063 kb on - strand, within B158DRAFT_2317at 480.131 kb on - strand, within B158DRAFT_2317at 480.560 kb on + strand, within B158DRAFT_2317at 480.603 kb on + strand, within B158DRAFT_2317at 480.806 kb on - strand, within B158DRAFT_2317at 480.809 kb on + strand, within B158DRAFT_2317at 480.811 kb on - strand, within B158DRAFT_2317at 480.853 kb on + strand, within B158DRAFT_2317at 480.853 kb on + strand, within B158DRAFT_2317at 480.927 kb on + strand, within B158DRAFT_2317at 480.935 kb on - strand, within B158DRAFT_2317at 481.155 kb on + strand, within B158DRAFT_2317at 481.158 kb on - strand, within B158DRAFT_2317at 481.165 kb on - strand, within B158DRAFT_2317at 481.415 kb on + strand, within B158DRAFT_2317at 481.516 kb on + strand, within B158DRAFT_2317at 481.524 kb on - strand, within B158DRAFT_2317at 481.525 kb on + strand, within B158DRAFT_2317at 481.533 kb on - strand, within B158DRAFT_2317at 481.533 kb on - strand, within B158DRAFT_2317at 481.545 kb on - strand, within B158DRAFT_2317at 481.731 kb on - strand, within B158DRAFT_2317at 481.733 kb on + strand, within B158DRAFT_2317at 481.743 kb on - strand, within B158DRAFT_2317at 481.786 kb on + strand, within B158DRAFT_2317at 481.831 kb on - strand, within B158DRAFT_2317at 481.868 kb on - strand, within B158DRAFT_2317at 481.899 kb on + strand, within B158DRAFT_2317at 482.122 kb on + strand, within B158DRAFT_2317at 482.162 kb on - strand, within B158DRAFT_2317at 482.246 kb on - strand, within B158DRAFT_2317at 482.310 kb on - strandat 482.331 kb on + strandat 482.339 kb on - strandat 482.339 kb on - strandat 482.351 kb on - strandat 482.398 kb on + strandat 482.475 kb on + strandat 482.557 kb on - strandat 482.764 kb on - strand, within B158DRAFT_2318at 482.774 kb on + strand, within B158DRAFT_2318at 482.845 kb on + strand, within B158DRAFT_2318at 482.853 kb on - strand, within B158DRAFT_2318at 482.894 kb on + strand, within B158DRAFT_2318at 482.934 kb on - strand, within B158DRAFT_2318at 482.959 kb on + strand, within B158DRAFT_2318at 482.993 kb on - strand, within B158DRAFT_2318at 482.998 kb on - strand, within B158DRAFT_2318at 483.080 kb on + strand, within B158DRAFT_2318at 483.153 kb on + strand, within B158DRAFT_2318at 483.182 kb on - strand, within B158DRAFT_2318at 483.187 kb on + strand, within B158DRAFT_2318at 483.274 kb on + strandat 483.288 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 5-Hydroxymethylfurfural 8 mM
remove
478,570 + B158DRAFT_2316 0.52 -2.7
478,578 + B158DRAFT_2316 0.52 -1.9
478,578 + B158DRAFT_2316 0.52 -3.7
478,586 - B158DRAFT_2316 0.53 -2.9
478,605 + B158DRAFT_2316 0.54 -3.1
478,638 + B158DRAFT_2316 0.55 -1.7
478,643 + B158DRAFT_2316 0.56 -5.0
478,812 - B158DRAFT_2316 0.64 -1.7
478,825 + B158DRAFT_2316 0.65 -4.0
478,838 + B158DRAFT_2316 0.65 -2.6
478,838 + B158DRAFT_2316 0.65 -2.3
478,838 + B158DRAFT_2316 0.65 -3.4
478,838 + B158DRAFT_2316 0.65 -2.2
478,838 + B158DRAFT_2316 0.65 -1.7
478,838 + B158DRAFT_2316 0.65 -4.1
478,838 + B158DRAFT_2316 0.65 -3.1
478,838 + B158DRAFT_2316 0.65 -3.0
478,846 - B158DRAFT_2316 0.66 -3.3
478,856 - B158DRAFT_2316 0.66 -3.0
478,894 - B158DRAFT_2316 0.68 -1.8
478,989 + B158DRAFT_2316 0.73 -1.8
478,989 + B158DRAFT_2316 0.73 +0.4
478,989 + B158DRAFT_2316 0.73 -2.8
478,997 - B158DRAFT_2316 0.73 -3.1
478,997 - B158DRAFT_2316 0.73 -3.7
478,997 - B158DRAFT_2316 0.73 -3.0
478,997 - B158DRAFT_2316 0.73 -2.6
478,997 - B158DRAFT_2316 0.73 -2.7
478,999 + B158DRAFT_2316 0.73 -2.6
478,999 + B158DRAFT_2316 0.73 -3.3
478,999 + B158DRAFT_2316 0.73 -0.2
478,999 + B158DRAFT_2316 0.73 -0.9
478,999 + B158DRAFT_2316 0.73 -4.4
478,999 + B158DRAFT_2316 0.73 -2.6
478,999 + B158DRAFT_2316 0.73 -1.2
479,007 - B158DRAFT_2316 0.74 -4.1
479,007 - B158DRAFT_2316 0.74 -2.0
479,007 - B158DRAFT_2316 0.74 -0.2
479,007 - B158DRAFT_2316 0.74 -0.9
479,007 - B158DRAFT_2316 0.74 -3.5
479,007 - B158DRAFT_2316 0.74 -2.2
479,007 - B158DRAFT_2316 0.74 -0.2
479,050 - B158DRAFT_2316 0.76 -1.7
479,115 + B158DRAFT_2316 0.79 -2.4
479,162 + B158DRAFT_2316 0.81 -2.6
479,201 - B158DRAFT_2316 0.83 -1.1
479,287 + B158DRAFT_2316 0.88 -3.5
479,324 + B158DRAFT_2316 0.89 -2.4
479,378 - -2.4
479,410 - -2.5
479,416 - +0.1
479,530 + +0.2
479,537 - +0.0
479,537 - -0.2
479,632 + +0.0
479,647 + -0.2
479,708 + -0.9
479,814 - -0.4
479,878 - B158DRAFT_2317 0.10 -0.2
479,878 - B158DRAFT_2317 0.10 -0.2
479,883 - B158DRAFT_2317 0.10 -0.2
480,055 + B158DRAFT_2317 0.16 +0.1
480,063 - B158DRAFT_2317 0.16 -0.6
480,131 - B158DRAFT_2317 0.19 +0.0
480,560 + B158DRAFT_2317 0.33 +0.0
480,603 + B158DRAFT_2317 0.34 +0.1
480,806 - B158DRAFT_2317 0.41 -0.1
480,809 + B158DRAFT_2317 0.41 +0.3
480,811 - B158DRAFT_2317 0.41 +0.2
480,853 + B158DRAFT_2317 0.42 -0.2
480,853 + B158DRAFT_2317 0.42 +0.2
480,927 + B158DRAFT_2317 0.45 +0.0
480,935 - B158DRAFT_2317 0.45 +0.1
481,155 + B158DRAFT_2317 0.52 -0.3
481,158 - B158DRAFT_2317 0.52 -0.1
481,165 - B158DRAFT_2317 0.53 -0.5
481,415 + B158DRAFT_2317 0.61 +0.1
481,516 + B158DRAFT_2317 0.64 -0.6
481,524 - B158DRAFT_2317 0.64 -0.1
481,525 + B158DRAFT_2317 0.65 +0.0
481,533 - B158DRAFT_2317 0.65 -0.2
481,533 - B158DRAFT_2317 0.65 +0.0
481,545 - B158DRAFT_2317 0.65 +0.3
481,731 - B158DRAFT_2317 0.71 -0.2
481,733 + B158DRAFT_2317 0.71 +0.1
481,743 - B158DRAFT_2317 0.72 -0.3
481,786 + B158DRAFT_2317 0.73 -0.4
481,831 - B158DRAFT_2317 0.75 +0.2
481,868 - B158DRAFT_2317 0.76 -0.6
481,899 + B158DRAFT_2317 0.77 +0.3
482,122 + B158DRAFT_2317 0.84 -0.1
482,162 - B158DRAFT_2317 0.85 -0.4
482,246 - B158DRAFT_2317 0.88 +0.1
482,310 - +0.4
482,331 + -0.1
482,339 - +0.2
482,339 - +0.5
482,351 - -0.2
482,398 + +0.6
482,475 + -0.3
482,557 - -0.0
482,764 - B158DRAFT_2318 0.26 -0.2
482,774 + B158DRAFT_2318 0.27 +0.2
482,845 + B158DRAFT_2318 0.38 -0.3
482,853 - B158DRAFT_2318 0.39 +0.0
482,894 + B158DRAFT_2318 0.45 -0.4
482,934 - B158DRAFT_2318 0.51 -1.1
482,959 + B158DRAFT_2318 0.55 -0.2
482,993 - B158DRAFT_2318 0.60 +0.1
482,998 - B158DRAFT_2318 0.61 +0.4
483,080 + B158DRAFT_2318 0.73 -0.7
483,153 + B158DRAFT_2318 0.84 +0.5
483,182 - B158DRAFT_2318 0.89 +0.3
483,187 + B158DRAFT_2318 0.89 -0.4
483,274 + +1.0
483,288 + +0.0

Or see this region's nucleotide sequence