Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2268

Experiment: m.b. 5-Hydroxymethylfurfural 8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2266 and B158DRAFT_2267 are separated by 97 nucleotidesB158DRAFT_2267 and B158DRAFT_2268 are separated by 92 nucleotidesB158DRAFT_2268 and B158DRAFT_2269 are separated by 29 nucleotidesB158DRAFT_2269 and B158DRAFT_2270 are separated by 191 nucleotides B158DRAFT_2266: B158DRAFT_2266 - Protein-disulfide isomerase, at 428,734 to 429,492 _2266 B158DRAFT_2267: B158DRAFT_2267 - Uncharacterized conserved protein, at 429,590 to 429,958 _2267 B158DRAFT_2268: B158DRAFT_2268 - single-stranded-DNA-specific exonuclease RecJ, at 430,051 to 431,778 _2268 B158DRAFT_2269: B158DRAFT_2269 - hypothetical protein, at 431,808 to 432,227 _2269 B158DRAFT_2270: B158DRAFT_2270 - Small-conductance mechanosensitive channel, at 432,419 to 433,258 _2270 Position (kb) 430 431 432Strain fitness (log2 ratio) -2 -1 0 1at 429.070 kb on + strand, within B158DRAFT_2266at 429.234 kb on - strand, within B158DRAFT_2266at 429.252 kb on + strand, within B158DRAFT_2266at 429.267 kb on - strand, within B158DRAFT_2266at 429.352 kb on + strand, within B158DRAFT_2266at 429.469 kb on - strandat 429.479 kb on - strandat 429.505 kb on - strandat 429.516 kb on - strandat 429.535 kb on + strandat 429.538 kb on - strandat 429.594 kb on + strandat 429.594 kb on + strandat 429.596 kb on + strandat 429.597 kb on - strandat 429.600 kb on + strandat 429.602 kb on - strandat 429.607 kb on - strandat 429.613 kb on - strandat 429.618 kb on - strandat 429.639 kb on + strand, within B158DRAFT_2267at 429.663 kb on - strand, within B158DRAFT_2267at 429.671 kb on - strand, within B158DRAFT_2267at 429.700 kb on - strand, within B158DRAFT_2267at 429.733 kb on + strand, within B158DRAFT_2267at 429.784 kb on + strand, within B158DRAFT_2267at 429.784 kb on - strand, within B158DRAFT_2267at 429.834 kb on + strand, within B158DRAFT_2267at 429.924 kb on - strandat 429.935 kb on + strandat 429.936 kb on + strandat 429.936 kb on + strandat 429.944 kb on - strandat 429.944 kb on - strandat 429.944 kb on - strandat 429.944 kb on - strandat 429.974 kb on + strandat 429.974 kb on + strandat 429.974 kb on + strandat 429.982 kb on - strandat 429.982 kb on - strandat 429.982 kb on - strandat 429.982 kb on - strandat 429.982 kb on - strandat 429.982 kb on - strandat 430.099 kb on + strandat 430.103 kb on + strandat 430.133 kb on - strandat 430.133 kb on - strandat 430.133 kb on - strandat 430.142 kb on + strandat 430.142 kb on + strandat 430.142 kb on + strandat 430.150 kb on - strandat 430.150 kb on - strandat 430.150 kb on - strandat 430.159 kb on + strandat 430.219 kb on + strandat 430.389 kb on - strand, within B158DRAFT_2268at 430.395 kb on - strand, within B158DRAFT_2268at 430.422 kb on + strand, within B158DRAFT_2268at 430.476 kb on + strand, within B158DRAFT_2268at 430.476 kb on + strand, within B158DRAFT_2268at 430.476 kb on + strand, within B158DRAFT_2268at 430.484 kb on - strand, within B158DRAFT_2268at 430.532 kb on - strand, within B158DRAFT_2268at 430.671 kb on - strand, within B158DRAFT_2268at 430.688 kb on + strand, within B158DRAFT_2268at 430.688 kb on + strand, within B158DRAFT_2268at 430.696 kb on - strand, within B158DRAFT_2268at 430.696 kb on - strand, within B158DRAFT_2268at 430.696 kb on - strand, within B158DRAFT_2268at 430.757 kb on + strand, within B158DRAFT_2268at 430.803 kb on + strand, within B158DRAFT_2268at 430.811 kb on - strand, within B158DRAFT_2268at 430.811 kb on - strand, within B158DRAFT_2268at 430.813 kb on + strand, within B158DRAFT_2268at 430.813 kb on + strand, within B158DRAFT_2268at 430.885 kb on + strand, within B158DRAFT_2268at 430.885 kb on + strand, within B158DRAFT_2268at 430.885 kb on + strand, within B158DRAFT_2268at 430.885 kb on + strand, within B158DRAFT_2268at 430.885 kb on + strand, within B158DRAFT_2268at 430.885 kb on + strand, within B158DRAFT_2268at 430.885 kb on + strand, within B158DRAFT_2268at 430.885 kb on + strand, within B158DRAFT_2268at 430.885 kb on + strand, within B158DRAFT_2268at 430.893 kb on - strand, within B158DRAFT_2268at 430.893 kb on - strand, within B158DRAFT_2268at 430.893 kb on - strand, within B158DRAFT_2268at 430.893 kb on - strand, within B158DRAFT_2268at 430.893 kb on - strand, within B158DRAFT_2268at 430.911 kb on + strand, within B158DRAFT_2268at 430.919 kb on - strand, within B158DRAFT_2268at 430.919 kb on - strand, within B158DRAFT_2268at 430.936 kb on + strand, within B158DRAFT_2268at 430.971 kb on + strand, within B158DRAFT_2268at 430.971 kb on + strand, within B158DRAFT_2268at 430.979 kb on - strand, within B158DRAFT_2268at 431.021 kb on - strand, within B158DRAFT_2268at 431.046 kb on - strand, within B158DRAFT_2268at 431.052 kb on + strand, within B158DRAFT_2268at 431.060 kb on - strand, within B158DRAFT_2268at 431.091 kb on - strand, within B158DRAFT_2268at 431.093 kb on + strand, within B158DRAFT_2268at 431.195 kb on + strand, within B158DRAFT_2268at 431.215 kb on + strand, within B158DRAFT_2268at 431.215 kb on + strand, within B158DRAFT_2268at 431.217 kb on + strand, within B158DRAFT_2268at 431.223 kb on - strand, within B158DRAFT_2268at 431.223 kb on - strand, within B158DRAFT_2268at 431.223 kb on - strand, within B158DRAFT_2268at 431.234 kb on - strand, within B158DRAFT_2268at 431.241 kb on - strand, within B158DRAFT_2268at 431.254 kb on + strand, within B158DRAFT_2268at 431.255 kb on - strand, within B158DRAFT_2268at 431.270 kb on - strand, within B158DRAFT_2268at 431.349 kb on - strand, within B158DRAFT_2268at 431.409 kb on + strand, within B158DRAFT_2268at 431.409 kb on + strand, within B158DRAFT_2268at 431.409 kb on + strand, within B158DRAFT_2268at 431.409 kb on + strand, within B158DRAFT_2268at 431.417 kb on - strand, within B158DRAFT_2268at 431.417 kb on - strand, within B158DRAFT_2268at 431.417 kb on - strand, within B158DRAFT_2268at 431.420 kb on + strand, within B158DRAFT_2268at 431.431 kb on - strand, within B158DRAFT_2268at 431.454 kb on + strand, within B158DRAFT_2268at 431.454 kb on + strand, within B158DRAFT_2268at 431.459 kb on + strand, within B158DRAFT_2268at 431.481 kb on - strand, within B158DRAFT_2268at 431.481 kb on - strand, within B158DRAFT_2268at 431.483 kb on + strand, within B158DRAFT_2268at 431.483 kb on + strand, within B158DRAFT_2268at 431.483 kb on + strand, within B158DRAFT_2268at 431.483 kb on + strand, within B158DRAFT_2268at 431.491 kb on - strand, within B158DRAFT_2268at 431.491 kb on - strand, within B158DRAFT_2268at 431.544 kb on - strand, within B158DRAFT_2268at 431.609 kb on + strandat 431.617 kb on - strandat 431.634 kb on + strandat 431.642 kb on - strandat 431.642 kb on - strandat 431.656 kb on + strandat 431.688 kb on + strandat 431.688 kb on + strandat 431.696 kb on - strandat 431.696 kb on - strandat 431.731 kb on + strandat 431.767 kb on + strandat 431.775 kb on - strandat 431.798 kb on + strandat 431.798 kb on + strandat 431.798 kb on + strandat 431.798 kb on + strandat 431.806 kb on - strandat 431.843 kb on + strandat 431.849 kb on - strandat 431.888 kb on + strand, within B158DRAFT_2269at 431.901 kb on - strand, within B158DRAFT_2269at 431.903 kb on + strand, within B158DRAFT_2269at 431.939 kb on + strand, within B158DRAFT_2269at 431.992 kb on - strand, within B158DRAFT_2269at 432.032 kb on - strand, within B158DRAFT_2269at 432.034 kb on + strand, within B158DRAFT_2269at 432.034 kb on + strand, within B158DRAFT_2269at 432.034 kb on + strand, within B158DRAFT_2269at 432.039 kb on + strand, within B158DRAFT_2269at 432.042 kb on - strand, within B158DRAFT_2269at 432.042 kb on - strand, within B158DRAFT_2269at 432.047 kb on - strand, within B158DRAFT_2269at 432.047 kb on - strand, within B158DRAFT_2269at 432.076 kb on + strand, within B158DRAFT_2269at 432.076 kb on + strand, within B158DRAFT_2269at 432.084 kb on - strand, within B158DRAFT_2269at 432.084 kb on - strand, within B158DRAFT_2269at 432.084 kb on - strand, within B158DRAFT_2269at 432.154 kb on - strand, within B158DRAFT_2269at 432.182 kb on + strand, within B158DRAFT_2269at 432.182 kb on + strand, within B158DRAFT_2269at 432.190 kb on - strandat 432.190 kb on - strandat 432.191 kb on - strandat 432.233 kb on - strandat 432.647 kb on + strand, within B158DRAFT_2270at 432.706 kb on + strand, within B158DRAFT_2270at 432.706 kb on + strand, within B158DRAFT_2270at 432.742 kb on + strand, within B158DRAFT_2270at 432.742 kb on + strand, within B158DRAFT_2270at 432.742 kb on + strand, within B158DRAFT_2270at 432.750 kb on - strand, within B158DRAFT_2270at 432.750 kb on - strand, within B158DRAFT_2270at 432.750 kb on - strand, within B158DRAFT_2270at 432.750 kb on - strand, within B158DRAFT_2270at 432.752 kb on + strand, within B158DRAFT_2270

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 5-Hydroxymethylfurfural 8 mM
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429,070 + B158DRAFT_2266 0.44 -0.0
429,234 - B158DRAFT_2266 0.66 +0.5
429,252 + B158DRAFT_2266 0.68 +0.6
429,267 - B158DRAFT_2266 0.70 +0.6
429,352 + B158DRAFT_2266 0.81 +0.3
429,469 - +0.5
429,479 - +0.5
429,505 - +0.0
429,516 - -0.2
429,535 + -0.3
429,538 - +0.3
429,594 + -0.6
429,594 + -0.2
429,596 + +0.4
429,597 - -0.4
429,600 + +0.1
429,602 - -0.0
429,607 - +0.4
429,613 - +0.3
429,618 - +0.7
429,639 + B158DRAFT_2267 0.13 +0.2
429,663 - B158DRAFT_2267 0.20 +0.1
429,671 - B158DRAFT_2267 0.22 +0.4
429,700 - B158DRAFT_2267 0.30 +0.1
429,733 + B158DRAFT_2267 0.39 +0.4
429,784 + B158DRAFT_2267 0.53 +0.2
429,784 - B158DRAFT_2267 0.53 +0.0
429,834 + B158DRAFT_2267 0.66 +0.1
429,924 - -0.2
429,935 + +0.3
429,936 + -0.1
429,936 + +0.3
429,944 - -0.2
429,944 - -0.2
429,944 - -0.5
429,944 - -0.1
429,974 + +0.6
429,974 + -0.3
429,974 + +0.3
429,982 - +0.3
429,982 - -0.0
429,982 - +0.5
429,982 - +0.3
429,982 - +0.4
429,982 - -0.2
430,099 + -0.2
430,103 + -1.5
430,133 - -0.8
430,133 - -0.9
430,133 - -0.8
430,142 + -2.5
430,142 + +0.1
430,142 + -0.9
430,150 - -0.7
430,150 - -0.1
430,150 - -0.7
430,159 + -1.0
430,219 + -0.6
430,389 - B158DRAFT_2268 0.20 -0.8
430,395 - B158DRAFT_2268 0.20 -0.8
430,422 + B158DRAFT_2268 0.21 +0.3
430,476 + B158DRAFT_2268 0.25 -1.3
430,476 + B158DRAFT_2268 0.25 -0.7
430,476 + B158DRAFT_2268 0.25 -0.9
430,484 - B158DRAFT_2268 0.25 -0.5
430,532 - B158DRAFT_2268 0.28 -1.4
430,671 - B158DRAFT_2268 0.36 -0.1
430,688 + B158DRAFT_2268 0.37 -0.9
430,688 + B158DRAFT_2268 0.37 -0.6
430,696 - B158DRAFT_2268 0.37 -0.5
430,696 - B158DRAFT_2268 0.37 -1.2
430,696 - B158DRAFT_2268 0.37 -0.7
430,757 + B158DRAFT_2268 0.41 -1.0
430,803 + B158DRAFT_2268 0.44 -0.6
430,811 - B158DRAFT_2268 0.44 -0.6
430,811 - B158DRAFT_2268 0.44 -0.5
430,813 + B158DRAFT_2268 0.44 -1.5
430,813 + B158DRAFT_2268 0.44 -1.2
430,885 + B158DRAFT_2268 0.48 -0.5
430,885 + B158DRAFT_2268 0.48 -1.2
430,885 + B158DRAFT_2268 0.48 -0.4
430,885 + B158DRAFT_2268 0.48 -0.7
430,885 + B158DRAFT_2268 0.48 -0.9
430,885 + B158DRAFT_2268 0.48 -0.6
430,885 + B158DRAFT_2268 0.48 -0.6
430,885 + B158DRAFT_2268 0.48 -0.8
430,885 + B158DRAFT_2268 0.48 -0.2
430,893 - B158DRAFT_2268 0.49 -0.7
430,893 - B158DRAFT_2268 0.49 -0.4
430,893 - B158DRAFT_2268 0.49 -0.1
430,893 - B158DRAFT_2268 0.49 -0.4
430,893 - B158DRAFT_2268 0.49 -0.0
430,911 + B158DRAFT_2268 0.50 -0.1
430,919 - B158DRAFT_2268 0.50 -0.8
430,919 - B158DRAFT_2268 0.50 -0.0
430,936 + B158DRAFT_2268 0.51 -0.3
430,971 + B158DRAFT_2268 0.53 +0.1
430,971 + B158DRAFT_2268 0.53 -0.5
430,979 - B158DRAFT_2268 0.54 -0.3
431,021 - B158DRAFT_2268 0.56 -0.9
431,046 - B158DRAFT_2268 0.58 -1.6
431,052 + B158DRAFT_2268 0.58 -1.2
431,060 - B158DRAFT_2268 0.58 +0.5
431,091 - B158DRAFT_2268 0.60 -0.8
431,093 + B158DRAFT_2268 0.60 -0.6
431,195 + B158DRAFT_2268 0.66 -0.7
431,215 + B158DRAFT_2268 0.67 -0.6
431,215 + B158DRAFT_2268 0.67 -0.4
431,217 + B158DRAFT_2268 0.67 -0.9
431,223 - B158DRAFT_2268 0.68 -0.2
431,223 - B158DRAFT_2268 0.68 -0.3
431,223 - B158DRAFT_2268 0.68 -0.6
431,234 - B158DRAFT_2268 0.68 -1.2
431,241 - B158DRAFT_2268 0.69 -0.7
431,254 + B158DRAFT_2268 0.70 -0.6
431,255 - B158DRAFT_2268 0.70 -1.8
431,270 - B158DRAFT_2268 0.71 -1.2
431,349 - B158DRAFT_2268 0.75 -0.9
431,409 + B158DRAFT_2268 0.79 -1.1
431,409 + B158DRAFT_2268 0.79 -0.8
431,409 + B158DRAFT_2268 0.79 -0.6
431,409 + B158DRAFT_2268 0.79 -0.7
431,417 - B158DRAFT_2268 0.79 -0.1
431,417 - B158DRAFT_2268 0.79 -0.8
431,417 - B158DRAFT_2268 0.79 -0.6
431,420 + B158DRAFT_2268 0.79 -0.5
431,431 - B158DRAFT_2268 0.80 -0.9
431,454 + B158DRAFT_2268 0.81 +0.4
431,454 + B158DRAFT_2268 0.81 -0.7
431,459 + B158DRAFT_2268 0.81 -0.4
431,481 - B158DRAFT_2268 0.83 -0.4
431,481 - B158DRAFT_2268 0.83 -0.6
431,483 + B158DRAFT_2268 0.83 -0.8
431,483 + B158DRAFT_2268 0.83 -0.7
431,483 + B158DRAFT_2268 0.83 +0.3
431,483 + B158DRAFT_2268 0.83 -1.4
431,491 - B158DRAFT_2268 0.83 -0.6
431,491 - B158DRAFT_2268 0.83 -0.2
431,544 - B158DRAFT_2268 0.86 -0.8
431,609 + -0.4
431,617 - -0.0
431,634 + -1.1
431,642 - -1.1
431,642 - -0.4
431,656 + -0.0
431,688 + -0.8
431,688 + -1.0
431,696 - -0.5
431,696 - +0.5
431,731 + -0.9
431,767 + +0.2
431,775 - +0.3
431,798 + -0.4
431,798 + -0.4
431,798 + +0.3
431,798 + -0.0
431,806 - +0.2
431,843 + -0.2
431,849 - -0.1
431,888 + B158DRAFT_2269 0.19 -0.3
431,901 - B158DRAFT_2269 0.22 +0.2
431,903 + B158DRAFT_2269 0.23 -0.3
431,939 + B158DRAFT_2269 0.31 +0.2
431,992 - B158DRAFT_2269 0.44 +0.0
432,032 - B158DRAFT_2269 0.53 -1.2
432,034 + B158DRAFT_2269 0.54 -0.1
432,034 + B158DRAFT_2269 0.54 -0.1
432,034 + B158DRAFT_2269 0.54 -0.4
432,039 + B158DRAFT_2269 0.55 -0.4
432,042 - B158DRAFT_2269 0.56 -0.3
432,042 - B158DRAFT_2269 0.56 +0.3
432,047 - B158DRAFT_2269 0.57 -0.3
432,047 - B158DRAFT_2269 0.57 -0.2
432,076 + B158DRAFT_2269 0.64 -0.2
432,076 + B158DRAFT_2269 0.64 +0.0
432,084 - B158DRAFT_2269 0.66 +0.3
432,084 - B158DRAFT_2269 0.66 +0.3
432,084 - B158DRAFT_2269 0.66 +0.2
432,154 - B158DRAFT_2269 0.82 +0.1
432,182 + B158DRAFT_2269 0.89 +0.2
432,182 + B158DRAFT_2269 0.89 +0.3
432,190 - +0.6
432,190 - +0.4
432,191 - +0.2
432,233 - +0.0
432,647 + B158DRAFT_2270 0.27 +0.1
432,706 + B158DRAFT_2270 0.34 -0.1
432,706 + B158DRAFT_2270 0.34 -0.3
432,742 + B158DRAFT_2270 0.38 -0.2
432,742 + B158DRAFT_2270 0.38 -0.1
432,742 + B158DRAFT_2270 0.38 +0.0
432,750 - B158DRAFT_2270 0.39 +0.2
432,750 - B158DRAFT_2270 0.39 -0.1
432,750 - B158DRAFT_2270 0.39 +0.3
432,750 - B158DRAFT_2270 0.39 -0.1
432,752 + B158DRAFT_2270 0.40 -0.1

Or see this region's nucleotide sequence