Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2035

Experiment: m.b. 5-Hydroxymethylfurfural 8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2034 and B158DRAFT_2035 are separated by 601 nucleotidesB158DRAFT_2035 and B158DRAFT_2036 overlap by 1 nucleotidesB158DRAFT_2036 and B158DRAFT_2037 are separated by 123 nucleotides B158DRAFT_2034: B158DRAFT_2034 - 6-phosphofructokinase, at 165,196 to 166,461 _2034 B158DRAFT_2035: B158DRAFT_2035 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase, at 167,063 to 168,415 _2035 B158DRAFT_2036: B158DRAFT_2036 - polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases, at 168,415 to 169,050 _2036 B158DRAFT_2037: B158DRAFT_2037 - ABC-type multidrug transport system, ATPase component, at 169,174 to 170,106 _2037 Position (kb) 167 168 169Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 166.486 kb on - strandat 166.526 kb on - strandat 166.642 kb on - strandat 166.671 kb on + strandat 166.671 kb on + strandat 166.671 kb on + strandat 166.679 kb on - strandat 166.714 kb on + strandat 166.741 kb on - strandat 166.794 kb on + strandat 166.794 kb on + strandat 166.794 kb on + strandat 166.811 kb on - strandat 166.814 kb on + strandat 166.814 kb on + strandat 166.814 kb on + strandat 166.817 kb on + strandat 166.822 kb on - strandat 166.822 kb on - strandat 166.827 kb on - strandat 166.849 kb on + strandat 167.022 kb on + strandat 167.106 kb on + strandat 167.106 kb on + strandat 167.114 kb on - strandat 167.114 kb on - strandat 167.114 kb on - strandat 167.114 kb on - strandat 167.207 kb on - strand, within B158DRAFT_2035at 167.243 kb on + strand, within B158DRAFT_2035at 167.253 kb on + strand, within B158DRAFT_2035at 167.253 kb on + strand, within B158DRAFT_2035at 167.261 kb on - strand, within B158DRAFT_2035at 167.298 kb on + strand, within B158DRAFT_2035at 167.322 kb on - strand, within B158DRAFT_2035at 167.336 kb on - strand, within B158DRAFT_2035at 167.341 kb on - strand, within B158DRAFT_2035at 167.378 kb on - strand, within B158DRAFT_2035at 167.404 kb on + strand, within B158DRAFT_2035at 167.423 kb on - strand, within B158DRAFT_2035at 167.513 kb on - strand, within B158DRAFT_2035at 167.771 kb on + strand, within B158DRAFT_2035at 167.821 kb on + strand, within B158DRAFT_2035at 167.829 kb on - strand, within B158DRAFT_2035at 167.856 kb on + strand, within B158DRAFT_2035at 167.864 kb on - strand, within B158DRAFT_2035at 167.891 kb on + strand, within B158DRAFT_2035at 167.899 kb on - strand, within B158DRAFT_2035at 168.024 kb on - strand, within B158DRAFT_2035at 168.118 kb on + strand, within B158DRAFT_2035at 168.134 kb on + strand, within B158DRAFT_2035at 168.142 kb on - strand, within B158DRAFT_2035at 168.198 kb on + strand, within B158DRAFT_2035at 168.198 kb on + strand, within B158DRAFT_2035at 168.198 kb on + strand, within B158DRAFT_2035at 168.206 kb on - strand, within B158DRAFT_2035at 168.254 kb on + strand, within B158DRAFT_2035at 169.037 kb on + strandat 169.092 kb on + strandat 169.100 kb on - strandat 169.100 kb on - strandat 169.122 kb on - strandat 169.124 kb on + strandat 169.124 kb on + strandat 169.132 kb on - strandat 169.132 kb on - strandat 169.132 kb on - strandat 169.134 kb on + strandat 169.134 kb on - strandat 169.142 kb on - strandat 169.249 kb on - strandat 169.249 kb on - strandat 169.289 kb on - strand, within B158DRAFT_2037at 169.313 kb on + strand, within B158DRAFT_2037at 169.321 kb on - strand, within B158DRAFT_2037at 169.344 kb on + strand, within B158DRAFT_2037at 169.364 kb on - strand, within B158DRAFT_2037at 169.372 kb on - strand, within B158DRAFT_2037at 169.385 kb on - strand, within B158DRAFT_2037at 169.400 kb on - strand, within B158DRAFT_2037

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 5-Hydroxymethylfurfural 8 mM
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166,486 - -0.6
166,526 - -0.2
166,642 - +0.9
166,671 + +0.4
166,671 + +1.6
166,671 + -0.1
166,679 - -0.7
166,714 + +0.6
166,741 - -0.1
166,794 + -0.3
166,794 + +1.2
166,794 + -0.1
166,811 - -0.3
166,814 + +0.0
166,814 + +0.0
166,814 + +0.2
166,817 + -0.4
166,822 - -0.1
166,822 - -0.0
166,827 - +0.3
166,849 + +0.1
167,022 + -2.0
167,106 + -1.1
167,106 + -1.1
167,114 - +0.9
167,114 - -1.9
167,114 - +2.4
167,114 - -3.7
167,207 - B158DRAFT_2035 0.11 -2.9
167,243 + B158DRAFT_2035 0.13 -2.3
167,253 + B158DRAFT_2035 0.14 +0.1
167,253 + B158DRAFT_2035 0.14 -2.3
167,261 - B158DRAFT_2035 0.15 -0.4
167,298 + B158DRAFT_2035 0.17 -1.8
167,322 - B158DRAFT_2035 0.19 -1.7
167,336 - B158DRAFT_2035 0.20 -0.3
167,341 - B158DRAFT_2035 0.21 -3.4
167,378 - B158DRAFT_2035 0.23 -1.1
167,404 + B158DRAFT_2035 0.25 -0.4
167,423 - B158DRAFT_2035 0.27 -1.8
167,513 - B158DRAFT_2035 0.33 -3.0
167,771 + B158DRAFT_2035 0.52 -0.4
167,821 + B158DRAFT_2035 0.56 -1.3
167,829 - B158DRAFT_2035 0.57 +0.9
167,856 + B158DRAFT_2035 0.59 -2.6
167,864 - B158DRAFT_2035 0.59 -0.4
167,891 + B158DRAFT_2035 0.61 -0.1
167,899 - B158DRAFT_2035 0.62 -2.0
168,024 - B158DRAFT_2035 0.71 -1.1
168,118 + B158DRAFT_2035 0.78 +0.4
168,134 + B158DRAFT_2035 0.79 -0.1
168,142 - B158DRAFT_2035 0.80 -1.1
168,198 + B158DRAFT_2035 0.84 +0.1
168,198 + B158DRAFT_2035 0.84 +2.4
168,198 + B158DRAFT_2035 0.84 -1.7
168,206 - B158DRAFT_2035 0.84 +0.9
168,254 + B158DRAFT_2035 0.88 +2.4
169,037 + -0.1
169,092 + -0.5
169,100 - -0.6
169,100 - -1.3
169,122 - -1.4
169,124 + -0.3
169,124 + +0.7
169,132 - -1.2
169,132 - -1.8
169,132 - -1.0
169,134 + -0.3
169,134 - -1.2
169,142 - -1.8
169,249 - -1.7
169,249 - -1.4
169,289 - B158DRAFT_2037 0.12 -1.5
169,313 + B158DRAFT_2037 0.15 +0.2
169,321 - B158DRAFT_2037 0.16 -1.9
169,344 + B158DRAFT_2037 0.18 -2.6
169,364 - B158DRAFT_2037 0.20 -1.0
169,372 - B158DRAFT_2037 0.21 -2.3
169,385 - B158DRAFT_2037 0.23 -1.5
169,400 - B158DRAFT_2037 0.24 -0.8

Or see this region's nucleotide sequence