Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0827

Experiment: m.b. 5-Hydroxymethylfurfural 8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0826 and B158DRAFT_0827 overlap by 14 nucleotidesB158DRAFT_0827 and B158DRAFT_0828 are separated by 254 nucleotidesB158DRAFT_0828 and B158DRAFT_0829 are separated by 3 nucleotides B158DRAFT_0826: B158DRAFT_0826 - drug resistance transporter, Bcr/CflA subfamily, at 837,950 to 839,134 _0826 B158DRAFT_0827: B158DRAFT_0827 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 839,121 to 839,726 _0827 B158DRAFT_0828: B158DRAFT_0828 - dihydroneopterin aldolase, at 839,981 to 840,334 _0828 B158DRAFT_0829: B158DRAFT_0829 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, at 840,338 to 840,835 _0829 Position (kb) 839 840Strain fitness (log2 ratio) -3 -2 -1 0 1at 838.179 kb on + strand, within B158DRAFT_0826at 838.199 kb on + strand, within B158DRAFT_0826at 838.205 kb on + strand, within B158DRAFT_0826at 838.213 kb on - strand, within B158DRAFT_0826at 838.223 kb on - strand, within B158DRAFT_0826at 838.232 kb on + strand, within B158DRAFT_0826at 838.240 kb on - strand, within B158DRAFT_0826at 838.249 kb on + strand, within B158DRAFT_0826at 838.249 kb on + strand, within B158DRAFT_0826at 838.249 kb on + strand, within B158DRAFT_0826at 838.249 kb on + strand, within B158DRAFT_0826at 838.257 kb on - strand, within B158DRAFT_0826at 838.257 kb on - strand, within B158DRAFT_0826at 838.257 kb on - strand, within B158DRAFT_0826at 838.257 kb on - strand, within B158DRAFT_0826at 838.263 kb on - strand, within B158DRAFT_0826at 838.464 kb on - strand, within B158DRAFT_0826at 838.466 kb on + strand, within B158DRAFT_0826at 838.479 kb on - strand, within B158DRAFT_0826at 838.493 kb on + strand, within B158DRAFT_0826at 838.501 kb on - strand, within B158DRAFT_0826at 838.509 kb on + strand, within B158DRAFT_0826at 838.558 kb on - strand, within B158DRAFT_0826at 838.661 kb on + strand, within B158DRAFT_0826at 838.727 kb on + strand, within B158DRAFT_0826at 838.727 kb on + strand, within B158DRAFT_0826at 838.727 kb on + strand, within B158DRAFT_0826at 838.730 kb on - strand, within B158DRAFT_0826at 838.733 kb on + strand, within B158DRAFT_0826at 838.735 kb on - strand, within B158DRAFT_0826at 838.735 kb on - strand, within B158DRAFT_0826at 838.735 kb on - strand, within B158DRAFT_0826at 838.741 kb on - strand, within B158DRAFT_0826at 838.760 kb on - strand, within B158DRAFT_0826at 838.799 kb on + strand, within B158DRAFT_0826at 838.799 kb on + strand, within B158DRAFT_0826at 838.807 kb on - strand, within B158DRAFT_0826at 838.813 kb on + strand, within B158DRAFT_0826at 838.813 kb on + strand, within B158DRAFT_0826at 838.857 kb on - strand, within B158DRAFT_0826at 838.913 kb on - strand, within B158DRAFT_0826at 838.913 kb on - strand, within B158DRAFT_0826at 839.000 kb on + strand, within B158DRAFT_0826at 839.000 kb on + strand, within B158DRAFT_0826at 839.005 kb on + strand, within B158DRAFT_0826at 839.005 kb on + strand, within B158DRAFT_0826at 839.005 kb on + strand, within B158DRAFT_0826at 839.005 kb on + strand, within B158DRAFT_0826at 839.013 kb on - strand, within B158DRAFT_0826at 839.020 kb on + strandat 839.020 kb on + strandat 839.028 kb on - strandat 839.043 kb on + strandat 839.043 kb on + strandat 839.043 kb on + strandat 839.051 kb on - strandat 839.060 kb on + strandat 839.076 kb on - strandat 839.076 kb on - strandat 839.087 kb on + strandat 839.088 kb on - strandat 839.299 kb on - strand, within B158DRAFT_0827at 839.334 kb on - strand, within B158DRAFT_0827at 839.356 kb on + strand, within B158DRAFT_0827at 839.383 kb on - strand, within B158DRAFT_0827at 839.408 kb on - strand, within B158DRAFT_0827at 839.437 kb on + strand, within B158DRAFT_0827at 839.437 kb on + strand, within B158DRAFT_0827at 839.437 kb on + strand, within B158DRAFT_0827at 839.437 kb on + strand, within B158DRAFT_0827at 839.437 kb on + strand, within B158DRAFT_0827at 839.445 kb on - strand, within B158DRAFT_0827at 839.445 kb on - strand, within B158DRAFT_0827at 839.445 kb on - strand, within B158DRAFT_0827at 839.445 kb on - strand, within B158DRAFT_0827at 839.499 kb on - strand, within B158DRAFT_0827at 839.560 kb on - strand, within B158DRAFT_0827at 839.586 kb on + strand, within B158DRAFT_0827at 839.608 kb on - strand, within B158DRAFT_0827at 839.608 kb on - strand, within B158DRAFT_0827at 839.686 kb on + strandat 839.686 kb on + strandat 839.694 kb on - strandat 839.733 kb on + strandat 839.733 kb on + strandat 839.733 kb on + strandat 839.740 kb on - strandat 839.741 kb on - strandat 839.767 kb on - strandat 839.769 kb on + strandat 839.777 kb on - strandat 839.781 kb on - strandat 839.781 kb on - strandat 839.792 kb on - strandat 839.812 kb on + strandat 839.885 kb on + strandat 839.885 kb on + strandat 839.938 kb on + strandat 840.383 kb on + strandat 840.496 kb on + strand, within B158DRAFT_0829at 840.504 kb on - strand, within B158DRAFT_0829at 840.544 kb on + strand, within B158DRAFT_0829at 840.653 kb on + strand, within B158DRAFT_0829at 840.672 kb on + strand, within B158DRAFT_0829at 840.683 kb on + strand, within B158DRAFT_0829at 840.683 kb on + strand, within B158DRAFT_0829at 840.690 kb on + strand, within B158DRAFT_0829at 840.690 kb on + strand, within B158DRAFT_0829at 840.698 kb on - strand, within B158DRAFT_0829at 840.698 kb on - strand, within B158DRAFT_0829at 840.698 kb on - strand, within B158DRAFT_0829

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 5-Hydroxymethylfurfural 8 mM
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838,179 + B158DRAFT_0826 0.19 -0.3
838,199 + B158DRAFT_0826 0.21 -0.5
838,205 + B158DRAFT_0826 0.22 -0.1
838,213 - B158DRAFT_0826 0.22 -0.6
838,223 - B158DRAFT_0826 0.23 -0.3
838,232 + B158DRAFT_0826 0.24 -1.2
838,240 - B158DRAFT_0826 0.24 -0.2
838,249 + B158DRAFT_0826 0.25 -0.4
838,249 + B158DRAFT_0826 0.25 +0.4
838,249 + B158DRAFT_0826 0.25 -1.0
838,249 + B158DRAFT_0826 0.25 -1.1
838,257 - B158DRAFT_0826 0.26 -0.3
838,257 - B158DRAFT_0826 0.26 -0.8
838,257 - B158DRAFT_0826 0.26 -1.2
838,257 - B158DRAFT_0826 0.26 -0.6
838,263 - B158DRAFT_0826 0.26 -0.9
838,464 - B158DRAFT_0826 0.43 -0.3
838,466 + B158DRAFT_0826 0.44 -0.5
838,479 - B158DRAFT_0826 0.45 -0.7
838,493 + B158DRAFT_0826 0.46 -0.5
838,501 - B158DRAFT_0826 0.46 -1.0
838,509 + B158DRAFT_0826 0.47 -0.7
838,558 - B158DRAFT_0826 0.51 -1.4
838,661 + B158DRAFT_0826 0.60 -1.3
838,727 + B158DRAFT_0826 0.66 -0.5
838,727 + B158DRAFT_0826 0.66 -0.5
838,727 + B158DRAFT_0826 0.66 -0.9
838,730 - B158DRAFT_0826 0.66 -0.9
838,733 + B158DRAFT_0826 0.66 -0.2
838,735 - B158DRAFT_0826 0.66 -0.5
838,735 - B158DRAFT_0826 0.66 -1.5
838,735 - B158DRAFT_0826 0.66 -0.9
838,741 - B158DRAFT_0826 0.67 -0.6
838,760 - B158DRAFT_0826 0.68 -0.7
838,799 + B158DRAFT_0826 0.72 -0.7
838,799 + B158DRAFT_0826 0.72 -0.7
838,807 - B158DRAFT_0826 0.72 +0.3
838,813 + B158DRAFT_0826 0.73 -1.4
838,813 + B158DRAFT_0826 0.73 -0.6
838,857 - B158DRAFT_0826 0.77 -0.4
838,913 - B158DRAFT_0826 0.81 -0.3
838,913 - B158DRAFT_0826 0.81 -0.7
839,000 + B158DRAFT_0826 0.89 -0.4
839,000 + B158DRAFT_0826 0.89 -1.0
839,005 + B158DRAFT_0826 0.89 -1.2
839,005 + B158DRAFT_0826 0.89 -0.6
839,005 + B158DRAFT_0826 0.89 +0.2
839,005 + B158DRAFT_0826 0.89 -2.9
839,013 - B158DRAFT_0826 0.90 -1.0
839,020 + -0.7
839,020 + -0.1
839,028 - -0.8
839,043 + -0.5
839,043 + -0.9
839,043 + -0.4
839,051 - -1.0
839,060 + -1.0
839,076 - -0.8
839,076 - -1.0
839,087 + -0.4
839,088 - -0.7
839,299 - B158DRAFT_0827 0.29 +0.4
839,334 - B158DRAFT_0827 0.35 +0.3
839,356 + B158DRAFT_0827 0.39 -0.4
839,383 - B158DRAFT_0827 0.43 +0.6
839,408 - B158DRAFT_0827 0.47 +0.1
839,437 + B158DRAFT_0827 0.52 +1.5
839,437 + B158DRAFT_0827 0.52 -0.2
839,437 + B158DRAFT_0827 0.52 -0.4
839,437 + B158DRAFT_0827 0.52 -1.0
839,437 + B158DRAFT_0827 0.52 -0.4
839,445 - B158DRAFT_0827 0.53 -0.8
839,445 - B158DRAFT_0827 0.53 +0.2
839,445 - B158DRAFT_0827 0.53 +0.1
839,445 - B158DRAFT_0827 0.53 +0.0
839,499 - B158DRAFT_0827 0.62 -0.8
839,560 - B158DRAFT_0827 0.72 +0.1
839,586 + B158DRAFT_0827 0.77 -0.5
839,608 - B158DRAFT_0827 0.80 -0.1
839,608 - B158DRAFT_0827 0.80 -0.6
839,686 + -0.5
839,686 + -0.8
839,694 - -0.9
839,733 + -0.2
839,733 + -0.7
839,733 + -0.6
839,740 - -0.1
839,741 - -0.1
839,767 - +0.5
839,769 + -0.4
839,777 - +0.3
839,781 - +0.4
839,781 - +0.4
839,792 - +0.8
839,812 + -0.4
839,885 + +0.0
839,885 + -0.3
839,938 + -0.5
840,383 + -0.9
840,496 + B158DRAFT_0829 0.32 +1.5
840,504 - B158DRAFT_0829 0.33 +0.6
840,544 + B158DRAFT_0829 0.41 -0.5
840,653 + B158DRAFT_0829 0.63 -0.4
840,672 + B158DRAFT_0829 0.67 -0.1
840,683 + B158DRAFT_0829 0.69 -0.4
840,683 + B158DRAFT_0829 0.69 -0.3
840,690 + B158DRAFT_0829 0.71 -0.3
840,690 + B158DRAFT_0829 0.71 +0.0
840,698 - B158DRAFT_0829 0.72 +0.1
840,698 - B158DRAFT_0829 0.72 +0.5
840,698 - B158DRAFT_0829 0.72 +0.1

Or see this region's nucleotide sequence