Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0752

Experiment: m.b. 5-Hydroxymethylfurfural 8 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_0750 and B158DRAFT_0751 are separated by 207 nucleotidesB158DRAFT_0751 and B158DRAFT_0752 are separated by 318 nucleotidesB158DRAFT_0752 and B158DRAFT_0753 are separated by 24 nucleotidesB158DRAFT_0753 and B158DRAFT_0754 are separated by 24 nucleotides B158DRAFT_0750: B158DRAFT_0750 - replication restart DNA helicase PriA, at 754,067 to 756,259 _0750 B158DRAFT_0751: B158DRAFT_0751 - hypothetical protein, at 756,467 to 756,778 _0751 B158DRAFT_0752: B158DRAFT_0752 - hypothetical protein, at 757,097 to 757,627 _0752 B158DRAFT_0753: B158DRAFT_0753 - hypothetical protein, at 757,652 to 758,290 _0753 B158DRAFT_0754: B158DRAFT_0754 - P pilus assembly protein, chaperone PapD, at 758,315 to 759,166 _0754 Position (kb) 757 758Strain fitness (log2 ratio) -2 -1 0 1at 756.136 kb on - strandat 756.136 kb on - strandat 756.174 kb on + strandat 756.174 kb on + strandat 756.243 kb on + strandat 756.243 kb on + strandat 756.243 kb on + strandat 756.243 kb on + strandat 756.243 kb on + strandat 756.251 kb on - strandat 756.251 kb on - strandat 756.251 kb on - strandat 756.251 kb on - strandat 756.251 kb on - strandat 756.251 kb on - strandat 756.251 kb on - strandat 756.256 kb on - strandat 756.305 kb on - strandat 756.404 kb on + strandat 756.412 kb on - strandat 756.448 kb on + strandat 756.502 kb on + strand, within B158DRAFT_0751at 756.531 kb on + strand, within B158DRAFT_0751at 756.533 kb on + strand, within B158DRAFT_0751at 756.541 kb on - strand, within B158DRAFT_0751at 756.573 kb on - strand, within B158DRAFT_0751at 756.580 kb on - strand, within B158DRAFT_0751at 756.731 kb on + strand, within B158DRAFT_0751at 756.739 kb on - strand, within B158DRAFT_0751at 756.739 kb on - strand, within B158DRAFT_0751at 756.739 kb on - strand, within B158DRAFT_0751at 756.766 kb on + strandat 756.866 kb on + strandat 756.866 kb on + strandat 757.162 kb on + strand, within B158DRAFT_0752at 757.165 kb on - strand, within B158DRAFT_0752at 757.165 kb on - strand, within B158DRAFT_0752at 757.187 kb on + strand, within B158DRAFT_0752at 757.192 kb on + strand, within B158DRAFT_0752at 757.260 kb on - strand, within B158DRAFT_0752at 757.262 kb on - strand, within B158DRAFT_0752at 757.272 kb on - strand, within B158DRAFT_0752at 757.288 kb on + strand, within B158DRAFT_0752at 757.295 kb on + strand, within B158DRAFT_0752at 757.295 kb on + strand, within B158DRAFT_0752at 757.295 kb on + strand, within B158DRAFT_0752at 757.295 kb on + strand, within B158DRAFT_0752at 757.295 kb on + strand, within B158DRAFT_0752at 757.295 kb on + strand, within B158DRAFT_0752at 757.303 kb on - strand, within B158DRAFT_0752at 757.303 kb on - strand, within B158DRAFT_0752at 757.303 kb on - strand, within B158DRAFT_0752at 757.303 kb on - strand, within B158DRAFT_0752at 757.303 kb on - strand, within B158DRAFT_0752at 757.303 kb on - strand, within B158DRAFT_0752at 757.311 kb on - strand, within B158DRAFT_0752at 757.322 kb on + strand, within B158DRAFT_0752at 757.337 kb on - strand, within B158DRAFT_0752at 757.382 kb on + strand, within B158DRAFT_0752at 757.386 kb on + strand, within B158DRAFT_0752at 757.394 kb on - strand, within B158DRAFT_0752at 757.409 kb on + strand, within B158DRAFT_0752at 757.414 kb on + strand, within B158DRAFT_0752at 757.416 kb on + strand, within B158DRAFT_0752at 757.416 kb on + strand, within B158DRAFT_0752at 757.424 kb on - strand, within B158DRAFT_0752at 757.613 kb on + strandat 757.646 kb on + strandat 757.646 kb on + strandat 757.654 kb on - strandat 757.654 kb on - strandat 757.700 kb on + strandat 757.715 kb on - strandat 757.724 kb on + strand, within B158DRAFT_0753at 757.724 kb on + strand, within B158DRAFT_0753at 757.732 kb on - strand, within B158DRAFT_0753at 757.744 kb on + strand, within B158DRAFT_0753at 757.744 kb on + strand, within B158DRAFT_0753at 757.749 kb on + strand, within B158DRAFT_0753at 757.759 kb on + strand, within B158DRAFT_0753at 757.759 kb on + strand, within B158DRAFT_0753at 757.801 kb on + strand, within B158DRAFT_0753at 757.801 kb on + strand, within B158DRAFT_0753at 757.801 kb on + strand, within B158DRAFT_0753at 757.801 kb on + strand, within B158DRAFT_0753at 757.809 kb on - strand, within B158DRAFT_0753at 757.809 kb on - strand, within B158DRAFT_0753at 757.809 kb on - strand, within B158DRAFT_0753at 757.809 kb on - strand, within B158DRAFT_0753at 757.809 kb on - strand, within B158DRAFT_0753at 757.819 kb on + strand, within B158DRAFT_0753at 757.829 kb on + strand, within B158DRAFT_0753at 757.834 kb on + strand, within B158DRAFT_0753at 757.837 kb on - strand, within B158DRAFT_0753at 757.837 kb on - strand, within B158DRAFT_0753at 757.842 kb on - strand, within B158DRAFT_0753at 757.856 kb on + strand, within B158DRAFT_0753at 757.963 kb on - strand, within B158DRAFT_0753at 757.963 kb on - strand, within B158DRAFT_0753at 757.988 kb on - strand, within B158DRAFT_0753at 757.988 kb on - strand, within B158DRAFT_0753at 757.988 kb on - strand, within B158DRAFT_0753at 758.065 kb on + strand, within B158DRAFT_0753at 758.075 kb on + strand, within B158DRAFT_0753at 758.105 kb on + strand, within B158DRAFT_0753at 758.140 kb on + strand, within B158DRAFT_0753at 758.148 kb on - strand, within B158DRAFT_0753at 758.148 kb on - strand, within B158DRAFT_0753at 758.148 kb on - strand, within B158DRAFT_0753at 758.148 kb on - strand, within B158DRAFT_0753at 758.162 kb on + strand, within B158DRAFT_0753at 758.162 kb on + strand, within B158DRAFT_0753at 758.162 kb on + strand, within B158DRAFT_0753at 758.170 kb on - strand, within B158DRAFT_0753at 758.172 kb on + strand, within B158DRAFT_0753at 758.172 kb on + strand, within B158DRAFT_0753at 758.172 kb on + strand, within B158DRAFT_0753at 758.172 kb on + strand, within B158DRAFT_0753at 758.180 kb on - strand, within B158DRAFT_0753at 758.180 kb on - strand, within B158DRAFT_0753at 758.180 kb on - strand, within B158DRAFT_0753at 758.320 kb on - strandat 758.334 kb on + strandat 758.342 kb on - strandat 758.342 kb on - strandat 758.475 kb on + strand, within B158DRAFT_0754at 758.483 kb on + strand, within B158DRAFT_0754at 758.491 kb on - strand, within B158DRAFT_0754at 758.491 kb on - strand, within B158DRAFT_0754at 758.491 kb on - strand, within B158DRAFT_0754at 758.491 kb on - strand, within B158DRAFT_0754at 758.491 kb on - strand, within B158DRAFT_0754at 758.586 kb on + strand, within B158DRAFT_0754at 758.586 kb on + strand, within B158DRAFT_0754at 758.587 kb on - strand, within B158DRAFT_0754at 758.605 kb on + strand, within B158DRAFT_0754at 758.605 kb on + strand, within B158DRAFT_0754at 758.613 kb on - strand, within B158DRAFT_0754at 758.613 kb on - strand, within B158DRAFT_0754at 758.613 kb on - strand, within B158DRAFT_0754at 758.613 kb on - strand, within B158DRAFT_0754at 758.613 kb on - strand, within B158DRAFT_0754

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 5-Hydroxymethylfurfural 8 mM
remove
756,136 - -2.3
756,136 - -2.2
756,174 + -1.8
756,174 + -0.5
756,243 + -1.5
756,243 + -1.6
756,243 + -0.8
756,243 + -0.3
756,243 + -0.5
756,251 - -0.1
756,251 - +0.2
756,251 - +0.0
756,251 - -0.0
756,251 - +0.3
756,251 - +0.5
756,251 - -0.3
756,256 - -0.9
756,305 - -0.4
756,404 + -0.2
756,412 - +0.2
756,448 + +0.2
756,502 + B158DRAFT_0751 0.11 -0.1
756,531 + B158DRAFT_0751 0.21 -0.3
756,533 + B158DRAFT_0751 0.21 -0.1
756,541 - B158DRAFT_0751 0.24 -0.3
756,573 - B158DRAFT_0751 0.34 -0.2
756,580 - B158DRAFT_0751 0.36 -0.6
756,731 + B158DRAFT_0751 0.85 +0.1
756,739 - B158DRAFT_0751 0.87 +1.3
756,739 - B158DRAFT_0751 0.87 -0.1
756,739 - B158DRAFT_0751 0.87 -0.3
756,766 + +0.0
756,866 + -0.0
756,866 + -2.4
757,162 + B158DRAFT_0752 0.12 +0.1
757,165 - B158DRAFT_0752 0.13 -0.0
757,165 - B158DRAFT_0752 0.13 -0.4
757,187 + B158DRAFT_0752 0.17 -1.0
757,192 + B158DRAFT_0752 0.18 -0.1
757,260 - B158DRAFT_0752 0.31 -0.2
757,262 - B158DRAFT_0752 0.31 -0.2
757,272 - B158DRAFT_0752 0.33 +0.3
757,288 + B158DRAFT_0752 0.36 -1.1
757,295 + B158DRAFT_0752 0.37 -0.1
757,295 + B158DRAFT_0752 0.37 +0.2
757,295 + B158DRAFT_0752 0.37 +0.1
757,295 + B158DRAFT_0752 0.37 -0.1
757,295 + B158DRAFT_0752 0.37 +0.0
757,295 + B158DRAFT_0752 0.37 +0.0
757,303 - B158DRAFT_0752 0.39 -0.1
757,303 - B158DRAFT_0752 0.39 +0.4
757,303 - B158DRAFT_0752 0.39 +0.0
757,303 - B158DRAFT_0752 0.39 -0.4
757,303 - B158DRAFT_0752 0.39 -0.6
757,303 - B158DRAFT_0752 0.39 -0.0
757,311 - B158DRAFT_0752 0.40 -0.3
757,322 + B158DRAFT_0752 0.42 -0.3
757,337 - B158DRAFT_0752 0.45 -0.6
757,382 + B158DRAFT_0752 0.54 -0.3
757,386 + B158DRAFT_0752 0.54 -0.7
757,394 - B158DRAFT_0752 0.56 -0.2
757,409 + B158DRAFT_0752 0.59 -0.2
757,414 + B158DRAFT_0752 0.60 +0.5
757,416 + B158DRAFT_0752 0.60 -0.0
757,416 + B158DRAFT_0752 0.60 -0.2
757,424 - B158DRAFT_0752 0.62 +0.2
757,613 + +0.2
757,646 + -0.2
757,646 + -0.0
757,654 - +0.6
757,654 - -0.8
757,700 + -0.1
757,715 - -0.5
757,724 + B158DRAFT_0753 0.11 +0.7
757,724 + B158DRAFT_0753 0.11 -0.3
757,732 - B158DRAFT_0753 0.13 -0.2
757,744 + B158DRAFT_0753 0.14 -0.1
757,744 + B158DRAFT_0753 0.14 -0.4
757,749 + B158DRAFT_0753 0.15 +0.1
757,759 + B158DRAFT_0753 0.17 -0.7
757,759 + B158DRAFT_0753 0.17 -0.3
757,801 + B158DRAFT_0753 0.23 -0.7
757,801 + B158DRAFT_0753 0.23 +0.0
757,801 + B158DRAFT_0753 0.23 +0.3
757,801 + B158DRAFT_0753 0.23 -1.3
757,809 - B158DRAFT_0753 0.25 +0.4
757,809 - B158DRAFT_0753 0.25 -0.1
757,809 - B158DRAFT_0753 0.25 +0.0
757,809 - B158DRAFT_0753 0.25 -0.3
757,809 - B158DRAFT_0753 0.25 -0.4
757,819 + B158DRAFT_0753 0.26 +0.1
757,829 + B158DRAFT_0753 0.28 -0.2
757,834 + B158DRAFT_0753 0.28 -0.3
757,837 - B158DRAFT_0753 0.29 -0.4
757,837 - B158DRAFT_0753 0.29 -0.8
757,842 - B158DRAFT_0753 0.30 +0.2
757,856 + B158DRAFT_0753 0.32 +0.1
757,963 - B158DRAFT_0753 0.49 +0.1
757,963 - B158DRAFT_0753 0.49 +0.0
757,988 - B158DRAFT_0753 0.53 +0.2
757,988 - B158DRAFT_0753 0.53 -0.1
757,988 - B158DRAFT_0753 0.53 +0.4
758,065 + B158DRAFT_0753 0.65 -0.2
758,075 + B158DRAFT_0753 0.66 -0.3
758,105 + B158DRAFT_0753 0.71 -0.2
758,140 + B158DRAFT_0753 0.76 -0.2
758,148 - B158DRAFT_0753 0.78 -0.0
758,148 - B158DRAFT_0753 0.78 -0.0
758,148 - B158DRAFT_0753 0.78 +0.2
758,148 - B158DRAFT_0753 0.78 +0.2
758,162 + B158DRAFT_0753 0.80 +0.1
758,162 + B158DRAFT_0753 0.80 +0.1
758,162 + B158DRAFT_0753 0.80 -0.1
758,170 - B158DRAFT_0753 0.81 -0.0
758,172 + B158DRAFT_0753 0.81 -0.5
758,172 + B158DRAFT_0753 0.81 -0.3
758,172 + B158DRAFT_0753 0.81 -0.1
758,172 + B158DRAFT_0753 0.81 +0.7
758,180 - B158DRAFT_0753 0.83 +0.2
758,180 - B158DRAFT_0753 0.83 +0.0
758,180 - B158DRAFT_0753 0.83 -0.1
758,320 - -0.5
758,334 + -0.1
758,342 - -0.1
758,342 - +0.7
758,475 + B158DRAFT_0754 0.19 -0.5
758,483 + B158DRAFT_0754 0.20 -0.1
758,491 - B158DRAFT_0754 0.21 -0.4
758,491 - B158DRAFT_0754 0.21 -0.3
758,491 - B158DRAFT_0754 0.21 +0.8
758,491 - B158DRAFT_0754 0.21 -0.0
758,491 - B158DRAFT_0754 0.21 +0.1
758,586 + B158DRAFT_0754 0.32 +0.1
758,586 + B158DRAFT_0754 0.32 +0.2
758,587 - B158DRAFT_0754 0.32 +0.3
758,605 + B158DRAFT_0754 0.34 -0.6
758,605 + B158DRAFT_0754 0.34 -0.2
758,613 - B158DRAFT_0754 0.35 +0.2
758,613 - B158DRAFT_0754 0.35 +0.2
758,613 - B158DRAFT_0754 0.35 +0.6
758,613 - B158DRAFT_0754 0.35 -0.7
758,613 - B158DRAFT_0754 0.35 +0.0

Or see this region's nucleotide sequence