Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0671

Experiment: m.b. 5-Hydroxymethylfurfural 8 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0670 and B158DRAFT_0671 overlap by 8 nucleotidesB158DRAFT_0671 and B158DRAFT_0672 are separated by 18 nucleotidesB158DRAFT_0672 and B158DRAFT_0674 are separated by 285 nucleotides B158DRAFT_0670: B158DRAFT_0670 - Uncharacterized protein required for cytochrome oxidase assembly, at 672,866 to 673,975 _0670 B158DRAFT_0671: B158DRAFT_0671 - protoheme IX farnesyltransferase, at 673,968 to 674,915 _0671 B158DRAFT_0672: B158DRAFT_0672 - Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems, at 674,934 to 675,584 _0672 B158DRAFT_0674: B158DRAFT_0674 - putative efflux protein, MATE family, at 675,870 to 677,246 _0674 Position (kb) 673 674 675Strain fitness (log2 ratio) -1 0 1 2at 672.970 kb on - strandat 672.970 kb on - strandat 672.970 kb on - strandat 672.970 kb on - strandat 672.970 kb on - strandat 672.970 kb on - strandat 672.970 kb on - strandat 672.998 kb on - strand, within B158DRAFT_0670at 673.017 kb on + strand, within B158DRAFT_0670at 673.070 kb on + strand, within B158DRAFT_0670at 673.104 kb on + strand, within B158DRAFT_0670at 673.118 kb on + strand, within B158DRAFT_0670at 673.128 kb on + strand, within B158DRAFT_0670at 673.169 kb on + strand, within B158DRAFT_0670at 673.202 kb on - strand, within B158DRAFT_0670at 673.270 kb on - strand, within B158DRAFT_0670at 673.299 kb on - strand, within B158DRAFT_0670at 673.412 kb on - strand, within B158DRAFT_0670at 673.412 kb on - strand, within B158DRAFT_0670at 673.412 kb on - strand, within B158DRAFT_0670at 673.412 kb on - strand, within B158DRAFT_0670at 673.412 kb on - strand, within B158DRAFT_0670at 673.550 kb on + strand, within B158DRAFT_0670at 673.558 kb on - strand, within B158DRAFT_0670at 673.567 kb on + strand, within B158DRAFT_0670at 673.575 kb on - strand, within B158DRAFT_0670at 673.606 kb on + strand, within B158DRAFT_0670at 673.606 kb on + strand, within B158DRAFT_0670at 673.618 kb on + strand, within B158DRAFT_0670at 673.621 kb on - strand, within B158DRAFT_0670at 673.725 kb on + strand, within B158DRAFT_0670at 673.771 kb on - strand, within B158DRAFT_0670at 673.771 kb on - strand, within B158DRAFT_0670at 673.771 kb on - strand, within B158DRAFT_0670at 673.771 kb on - strand, within B158DRAFT_0670at 673.771 kb on - strand, within B158DRAFT_0670at 673.771 kb on - strand, within B158DRAFT_0670at 673.789 kb on - strand, within B158DRAFT_0670at 673.798 kb on + strand, within B158DRAFT_0670at 673.798 kb on + strand, within B158DRAFT_0670at 673.798 kb on + strand, within B158DRAFT_0670at 673.806 kb on - strand, within B158DRAFT_0670at 673.806 kb on - strand, within B158DRAFT_0670at 673.806 kb on - strand, within B158DRAFT_0670at 673.806 kb on - strand, within B158DRAFT_0670at 673.959 kb on + strandat 674.024 kb on - strandat 674.063 kb on + strand, within B158DRAFT_0671at 674.100 kb on - strand, within B158DRAFT_0671at 674.116 kb on - strand, within B158DRAFT_0671at 674.162 kb on - strand, within B158DRAFT_0671at 674.169 kb on + strand, within B158DRAFT_0671at 674.177 kb on - strand, within B158DRAFT_0671at 674.214 kb on + strand, within B158DRAFT_0671at 674.231 kb on + strand, within B158DRAFT_0671at 674.254 kb on - strand, within B158DRAFT_0671at 674.373 kb on + strand, within B158DRAFT_0671at 674.374 kb on + strand, within B158DRAFT_0671at 674.397 kb on + strand, within B158DRAFT_0671at 674.527 kb on - strand, within B158DRAFT_0671at 674.527 kb on - strand, within B158DRAFT_0671at 674.766 kb on - strand, within B158DRAFT_0671at 674.830 kb on + strandat 674.838 kb on - strandat 674.838 kb on - strandat 675.105 kb on + strand, within B158DRAFT_0672at 675.172 kb on + strand, within B158DRAFT_0672at 675.180 kb on - strand, within B158DRAFT_0672at 675.180 kb on - strand, within B158DRAFT_0672at 675.244 kb on + strand, within B158DRAFT_0672at 675.341 kb on + strand, within B158DRAFT_0672at 675.479 kb on - strand, within B158DRAFT_0672at 675.492 kb on + strand, within B158DRAFT_0672at 675.492 kb on + strand, within B158DRAFT_0672at 675.500 kb on - strand, within B158DRAFT_0672at 675.500 kb on - strand, within B158DRAFT_0672at 675.500 kb on - strand, within B158DRAFT_0672at 675.519 kb on + strand, within B158DRAFT_0672at 675.519 kb on + strand, within B158DRAFT_0672at 675.527 kb on - strandat 675.527 kb on - strandat 675.535 kb on + strandat 675.550 kb on - strandat 675.586 kb on - strandat 675.785 kb on - strandat 675.850 kb on - strandat 675.869 kb on - strandat 675.883 kb on - strandat 675.903 kb on + strandat 675.913 kb on + strandat 675.913 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. 5-Hydroxymethylfurfural 8 mM
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672,970 - +0.9
672,970 - +0.9
672,970 - +0.3
672,970 - -0.1
672,970 - +0.5
672,970 - +1.0
672,970 - +0.6
672,998 - B158DRAFT_0670 0.12 +0.8
673,017 + B158DRAFT_0670 0.14 +0.5
673,070 + B158DRAFT_0670 0.18 +0.6
673,104 + B158DRAFT_0670 0.21 +0.2
673,118 + B158DRAFT_0670 0.23 +0.5
673,128 + B158DRAFT_0670 0.24 +0.6
673,169 + B158DRAFT_0670 0.27 +0.5
673,202 - B158DRAFT_0670 0.30 +0.6
673,270 - B158DRAFT_0670 0.36 +1.2
673,299 - B158DRAFT_0670 0.39 +0.6
673,412 - B158DRAFT_0670 0.49 +1.5
673,412 - B158DRAFT_0670 0.49 +0.6
673,412 - B158DRAFT_0670 0.49 +0.5
673,412 - B158DRAFT_0670 0.49 +0.7
673,412 - B158DRAFT_0670 0.49 +0.4
673,550 + B158DRAFT_0670 0.62 -0.1
673,558 - B158DRAFT_0670 0.62 +0.4
673,567 + B158DRAFT_0670 0.63 +1.2
673,575 - B158DRAFT_0670 0.64 +0.6
673,606 + B158DRAFT_0670 0.67 +0.5
673,606 + B158DRAFT_0670 0.67 +0.6
673,618 + B158DRAFT_0670 0.68 +1.3
673,621 - B158DRAFT_0670 0.68 +0.9
673,725 + B158DRAFT_0670 0.77 +1.8
673,771 - B158DRAFT_0670 0.82 +0.5
673,771 - B158DRAFT_0670 0.82 +0.6
673,771 - B158DRAFT_0670 0.82 +0.7
673,771 - B158DRAFT_0670 0.82 +0.6
673,771 - B158DRAFT_0670 0.82 +1.0
673,771 - B158DRAFT_0670 0.82 +0.7
673,789 - B158DRAFT_0670 0.83 +0.9
673,798 + B158DRAFT_0670 0.84 +0.5
673,798 + B158DRAFT_0670 0.84 +0.4
673,798 + B158DRAFT_0670 0.84 +0.3
673,806 - B158DRAFT_0670 0.85 +0.1
673,806 - B158DRAFT_0670 0.85 +0.8
673,806 - B158DRAFT_0670 0.85 +0.7
673,806 - B158DRAFT_0670 0.85 +1.0
673,959 + -0.3
674,024 - +0.7
674,063 + B158DRAFT_0671 0.10 +0.7
674,100 - B158DRAFT_0671 0.14 +0.6
674,116 - B158DRAFT_0671 0.16 +1.8
674,162 - B158DRAFT_0671 0.20 +2.5
674,169 + B158DRAFT_0671 0.21 +0.0
674,177 - B158DRAFT_0671 0.22 +0.1
674,214 + B158DRAFT_0671 0.26 +0.5
674,231 + B158DRAFT_0671 0.28 +0.4
674,254 - B158DRAFT_0671 0.30 -0.5
674,373 + B158DRAFT_0671 0.43 +0.7
674,374 + B158DRAFT_0671 0.43 -0.5
674,397 + B158DRAFT_0671 0.45 +0.9
674,527 - B158DRAFT_0671 0.59 +0.8
674,527 - B158DRAFT_0671 0.59 +1.2
674,766 - B158DRAFT_0671 0.84 +0.4
674,830 + +0.6
674,838 - +0.6
674,838 - +1.3
675,105 + B158DRAFT_0672 0.26 +0.2
675,172 + B158DRAFT_0672 0.37 +0.2
675,180 - B158DRAFT_0672 0.38 +0.2
675,180 - B158DRAFT_0672 0.38 +0.6
675,244 + B158DRAFT_0672 0.48 +0.6
675,341 + B158DRAFT_0672 0.63 +0.4
675,479 - B158DRAFT_0672 0.84 +0.3
675,492 + B158DRAFT_0672 0.86 +0.3
675,492 + B158DRAFT_0672 0.86 +0.6
675,500 - B158DRAFT_0672 0.87 -0.6
675,500 - B158DRAFT_0672 0.87 -0.0
675,500 - B158DRAFT_0672 0.87 +0.4
675,519 + B158DRAFT_0672 0.90 -0.1
675,519 + B158DRAFT_0672 0.90 +1.5
675,527 - +0.6
675,527 - +0.7
675,535 + +1.3
675,550 - +0.3
675,586 - -0.9
675,785 - -0.5
675,850 - +0.3
675,869 - +0.3
675,883 - -0.3
675,903 + -0.2
675,913 + +0.0
675,913 + -0.3

Or see this region's nucleotide sequence