Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF890

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF889 and GFF890 are separated by 274 nucleotidesGFF890 and GFF891 are separated by 18 nucleotides GFF889 - putative DNA-binding protein, at 69,292 to 70,059 GFF889 GFF890 - Inosose dehydratase (EC 4.2.1.44), at 70,334 to 71,239 GFF890 GFF891 - Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18), at 71,258 to 72,268 GFF891 Position (kb) 70 71 72Strain fitness (log2 ratio) -3 -2 -1 0 1at 69.344 kb on - strandat 69.395 kb on - strand, within GFF889at 69.451 kb on - strand, within GFF889at 69.605 kb on + strand, within GFF889at 69.641 kb on + strand, within GFF889at 69.652 kb on + strand, within GFF889at 70.317 kb on - strandat 70.337 kb on + strandat 70.358 kb on - strandat 70.583 kb on - strand, within GFF890at 70.622 kb on + strand, within GFF890at 70.817 kb on - strand, within GFF890at 70.911 kb on + strand, within GFF890at 70.912 kb on - strand, within GFF890at 71.275 kb on + strandat 71.280 kb on + strandat 71.310 kb on + strandat 71.340 kb on + strandat 71.340 kb on + strandat 71.396 kb on - strand, within GFF891at 71.400 kb on - strand, within GFF891at 71.450 kb on - strand, within GFF891at 71.525 kb on - strand, within GFF891at 71.765 kb on - strand, within GFF891at 71.765 kb on - strand, within GFF891at 71.768 kb on + strand, within GFF891at 71.769 kb on - strand, within GFF891at 72.047 kb on - strand, within GFF891at 72.082 kb on + strand, within GFF891at 72.083 kb on - strand, within GFF891at 72.170 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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69,344 - +0.7
69,395 - GFF889 0.13 +1.0
69,451 - GFF889 0.21 -0.2
69,605 + GFF889 0.41 +0.4
69,641 + GFF889 0.45 -0.1
69,652 + GFF889 0.47 -0.2
70,317 - -0.4
70,337 + +0.1
70,358 - -0.0
70,583 - GFF890 0.27 -3.0
70,622 + GFF890 0.32 -1.0
70,817 - GFF890 0.53 -0.2
70,911 + GFF890 0.64 +0.4
70,912 - GFF890 0.64 -0.5
71,275 + +0.2
71,280 + +1.1
71,310 + -1.5
71,340 + +1.6
71,340 + -0.3
71,396 - GFF891 0.14 -0.9
71,400 - GFF891 0.14 +1.6
71,450 - GFF891 0.19 -0.6
71,525 - GFF891 0.26 +0.2
71,765 - GFF891 0.50 -2.5
71,765 - GFF891 0.50 -0.9
71,768 + GFF891 0.50 -0.6
71,769 - GFF891 0.51 -0.5
72,047 - GFF891 0.78 -0.3
72,082 + GFF891 0.82 +0.5
72,083 - GFF891 0.82 -0.2
72,170 + +0.4

Or see this region's nucleotide sequence