Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF878

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF877 and GFF878 overlap by 4 nucleotidesGFF878 and GFF879 are separated by 409 nucleotides GFF877 - Putative sugar transporter, at 55,312 to 56,520 GFF877 GFF878 - FIG01045393: hypothetical protein, at 56,517 to 57,680 GFF878 GFF879 - Inorganic pyrophosphatase (EC 3.6.1.1), at 58,090 to 58,620 GFF879 Position (kb) 56 57 58Strain fitness (log2 ratio) -2 -1 0 1 2at 55.549 kb on - strand, within GFF877at 55.658 kb on - strand, within GFF877at 55.678 kb on - strand, within GFF877at 55.822 kb on - strand, within GFF877at 55.854 kb on - strand, within GFF877at 55.870 kb on + strand, within GFF877at 55.902 kb on + strand, within GFF877at 55.941 kb on - strand, within GFF877at 56.020 kb on - strand, within GFF877at 56.020 kb on - strand, within GFF877at 56.100 kb on - strand, within GFF877at 56.223 kb on + strand, within GFF877at 56.228 kb on + strand, within GFF877at 56.775 kb on - strand, within GFF878at 56.794 kb on - strand, within GFF878at 56.844 kb on - strand, within GFF878at 56.952 kb on + strand, within GFF878at 57.008 kb on + strand, within GFF878at 57.112 kb on - strand, within GFF878at 57.442 kb on + strand, within GFF878at 57.443 kb on - strand, within GFF878at 57.443 kb on - strand, within GFF878at 57.504 kb on - strand, within GFF878

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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55,549 - GFF877 0.20 -0.9
55,658 - GFF877 0.29 -0.4
55,678 - GFF877 0.30 +0.1
55,822 - GFF877 0.42 +0.2
55,854 - GFF877 0.45 -1.6
55,870 + GFF877 0.46 +0.3
55,902 + GFF877 0.49 +1.1
55,941 - GFF877 0.52 +2.0
56,020 - GFF877 0.59 -0.4
56,020 - GFF877 0.59 +0.6
56,100 - GFF877 0.65 -0.8
56,223 + GFF877 0.75 -2.4
56,228 + GFF877 0.76 -0.1
56,775 - GFF878 0.22 +0.0
56,794 - GFF878 0.24 +0.3
56,844 - GFF878 0.28 +0.5
56,952 + GFF878 0.37 +0.1
57,008 + GFF878 0.42 +0.2
57,112 - GFF878 0.51 -0.3
57,442 + GFF878 0.79 -0.4
57,443 - GFF878 0.80 +0.5
57,443 - GFF878 0.80 +0.1
57,504 - GFF878 0.85 +2.1

Or see this region's nucleotide sequence