Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF752

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF751 and GFF752 are separated by 477 nucleotidesGFF752 and GFF753 are separated by 31 nucleotidesGFF753 and GFF754 are separated by 169 nucleotidesGFF754 and GFF755 overlap by 17 nucleotides GFF751 - TrkA, Potassium channel-family protein, at 109,773 to 111,326 GFF751 GFF752 - Inner membrane protein, at 111,804 to 112,106 GFF752 GFF753 - Glutaredoxin 1, at 112,138 to 112,401 GFF753 GFF754 - YbjC protein, clustered with oxygen-insensitive NADPH nitroreductase, at 112,571 to 112,861 GFF754 GFF755 - Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-), at 112,845 to 113,567 GFF755 Position (kb) 111 112 113Strain fitness (log2 ratio) -2 -1 0 1at 110.907 kb on + strand, within GFF751at 110.959 kb on + strand, within GFF751at 110.987 kb on + strand, within GFF751at 111.126 kb on - strand, within GFF751at 111.260 kb on + strandat 111.313 kb on - strandat 111.585 kb on + strandat 111.611 kb on + strandat 111.611 kb on + strandat 111.803 kb on + strandat 111.804 kb on - strandat 111.811 kb on + strandat 111.811 kb on + strandat 111.812 kb on - strandat 111.812 kb on - strandat 112.015 kb on + strand, within GFF752at 112.234 kb on + strand, within GFF753at 112.296 kb on + strand, within GFF753at 112.365 kb on - strand, within GFF753at 112.395 kb on + strandat 112.396 kb on - strandat 112.401 kb on + strandat 112.401 kb on + strandat 112.401 kb on + strandat 112.441 kb on + strandat 112.442 kb on - strandat 112.505 kb on + strandat 112.507 kb on + strandat 112.507 kb on + strandat 112.539 kb on - strandat 112.670 kb on - strand, within GFF754at 112.707 kb on + strand, within GFF754at 112.707 kb on + strand, within GFF754at 112.934 kb on + strand, within GFF755at 112.986 kb on - strand, within GFF755

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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110,907 + GFF751 0.73 +1.0
110,959 + GFF751 0.76 -2.3
110,987 + GFF751 0.78 +0.0
111,126 - GFF751 0.87 -2.3
111,260 + -1.0
111,313 - -0.3
111,585 + -1.5
111,611 + -0.4
111,611 + -0.0
111,803 + +0.0
111,804 - +0.0
111,811 + +0.2
111,811 + +0.5
111,812 - -0.6
111,812 - -0.2
112,015 + GFF752 0.70 -1.3
112,234 + GFF753 0.36 +0.0
112,296 + GFF753 0.60 +0.5
112,365 - GFF753 0.86 +0.5
112,395 + -2.3
112,396 - -0.3
112,401 + -0.5
112,401 + -0.3
112,401 + +0.3
112,441 + -0.3
112,442 - +0.9
112,505 + -0.6
112,507 + +1.5
112,507 + -0.5
112,539 - +0.5
112,670 - GFF754 0.34 -1.1
112,707 + GFF754 0.47 -0.4
112,707 + GFF754 0.47 -0.5
112,934 + GFF755 0.12 +0.4
112,986 - GFF755 0.20 -1.0

Or see this region's nucleotide sequence