Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF652

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF651 and GFF652 are separated by 10 nucleotidesGFF652 and GFF653 are separated by 222 nucleotides GFF651 - Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10), at 6,588 to 7,634 GFF651 GFF652 - UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) / UDP-glucose 4-epimerase (EC 5.1.3.2), at 7,645 to 8,661 GFF652 GFF653 - Putative inner membrane protein, at 8,884 to 9,792 GFF653 Position (kb) 7 8 9Strain fitness (log2 ratio) -2 -1 0 1 2at 6.689 kb on - strandat 6.903 kb on - strand, within GFF651at 7.033 kb on + strand, within GFF651at 7.417 kb on + strand, within GFF651at 7.418 kb on - strand, within GFF651at 7.592 kb on + strandat 7.594 kb on + strandat 7.623 kb on - strandat 7.634 kb on + strandat 7.805 kb on + strand, within GFF652at 7.831 kb on - strand, within GFF652at 7.884 kb on + strand, within GFF652at 7.886 kb on + strand, within GFF652at 7.887 kb on - strand, within GFF652at 7.890 kb on + strand, within GFF652at 7.890 kb on + strand, within GFF652at 8.053 kb on - strand, within GFF652at 8.054 kb on + strand, within GFF652at 8.054 kb on + strand, within GFF652at 8.055 kb on - strand, within GFF652at 8.206 kb on - strand, within GFF652at 8.298 kb on + strand, within GFF652at 8.313 kb on + strand, within GFF652at 8.680 kb on + strandat 8.681 kb on - strandat 8.686 kb on - strandat 8.693 kb on - strandat 8.698 kb on + strandat 8.985 kb on + strand, within GFF653at 8.986 kb on - strand, within GFF653at 9.041 kb on + strand, within GFF653at 9.042 kb on - strand, within GFF653at 9.203 kb on + strand, within GFF653at 9.212 kb on + strand, within GFF653at 9.303 kb on + strand, within GFF653at 9.439 kb on + strand, within GFF653at 9.597 kb on + strand, within GFF653at 9.617 kb on - strand, within GFF653

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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6,689 - +0.4
6,903 - GFF651 0.30 -0.1
7,033 + GFF651 0.43 +0.0
7,417 + GFF651 0.79 -0.5
7,418 - GFF651 0.79 -1.1
7,592 + +0.8
7,594 + +0.4
7,623 - -1.8
7,634 + -1.9
7,805 + GFF652 0.16 -0.8
7,831 - GFF652 0.18 -0.4
7,884 + GFF652 0.24 -0.8
7,886 + GFF652 0.24 -2.7
7,887 - GFF652 0.24 +0.0
7,890 + GFF652 0.24 -0.6
7,890 + GFF652 0.24 -0.5
8,053 - GFF652 0.40 +1.4
8,054 + GFF652 0.40 -1.5
8,054 + GFF652 0.40 -0.7
8,055 - GFF652 0.40 -1.5
8,206 - GFF652 0.55 +0.7
8,298 + GFF652 0.64 -2.3
8,313 + GFF652 0.66 -2.4
8,680 + -0.6
8,681 - -0.1
8,686 - +0.1
8,693 - -0.4
8,698 + -1.1
8,985 + GFF653 0.11 -0.3
8,986 - GFF653 0.11 -0.6
9,041 + GFF653 0.17 +2.4
9,042 - GFF653 0.17 -0.8
9,203 + GFF653 0.35 -0.7
9,212 + GFF653 0.36 -0.2
9,303 + GFF653 0.46 -1.1
9,439 + GFF653 0.61 +0.2
9,597 + GFF653 0.78 -0.1
9,617 - GFF653 0.81 +1.7

Or see this region's nucleotide sequence