Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF634

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF632 and GFF633 are separated by 17 nucleotidesGFF633 and GFF634 overlap by 8 nucleotidesGFF634 and GFF635 overlap by 8 nucleotides GFF632 - Methyl-directed repair DNA adenine methylase (EC 2.1.1.72), at 373,556 to 374,392 GFF632 GFF633 - Ribulose-phosphate 3-epimerase (EC 5.1.3.1), at 374,410 to 375,087 GFF633 GFF634 - Phosphoglycolate phosphatase (EC 3.1.3.18), at 375,080 to 375,838 GFF634 GFF635 - Tryptophanyl-tRNA synthetase (EC 6.1.1.2), at 375,831 to 376,835 GFF635 Position (kb) 375 376Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 374.305 kb on + strand, within GFF632at 374.419 kb on + strandat 374.420 kb on - strandat 374.533 kb on + strand, within GFF633at 374.534 kb on - strand, within GFF633at 374.718 kb on - strand, within GFF633at 374.718 kb on - strand, within GFF633at 374.742 kb on + strand, within GFF633at 374.783 kb on - strand, within GFF633at 374.791 kb on + strand, within GFF633at 375.085 kb on + strandat 375.331 kb on + strand, within GFF634at 375.331 kb on + strand, within GFF634at 375.331 kb on + strand, within GFF634at 375.332 kb on - strand, within GFF634at 375.352 kb on - strand, within GFF634at 375.355 kb on + strand, within GFF634at 375.356 kb on - strand, within GFF634at 375.380 kb on + strand, within GFF634at 375.380 kb on + strand, within GFF634at 375.468 kb on + strand, within GFF634at 375.537 kb on - strand, within GFF634at 375.574 kb on + strand, within GFF634at 375.713 kb on + strand, within GFF634at 375.714 kb on - strand, within GFF634at 375.719 kb on + strand, within GFF634at 375.725 kb on + strand, within GFF634at 375.764 kb on + strandat 375.776 kb on - strandat 375.836 kb on + strandat 375.891 kb on + strandat 375.891 kb on + strandat 375.946 kb on - strand, within GFF635at 375.968 kb on + strand, within GFF635at 375.998 kb on - strand, within GFF635at 376.002 kb on - strand, within GFF635at 376.123 kb on - strand, within GFF635at 376.124 kb on + strand, within GFF635at 376.124 kb on + strand, within GFF635at 376.129 kb on - strand, within GFF635at 376.167 kb on - strand, within GFF635at 376.533 kb on + strand, within GFF635

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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374,305 + GFF632 0.89 -0.4
374,419 + -1.8
374,420 - -0.1
374,533 + GFF633 0.18 +0.4
374,534 - GFF633 0.18 -1.4
374,718 - GFF633 0.45 -1.7
374,718 - GFF633 0.45 -0.4
374,742 + GFF633 0.49 -0.1
374,783 - GFF633 0.55 -2.0
374,791 + GFF633 0.56 -0.5
375,085 + +0.3
375,331 + GFF634 0.33 -1.3
375,331 + GFF634 0.33 -1.6
375,331 + GFF634 0.33 +0.2
375,332 - GFF634 0.33 -1.9
375,352 - GFF634 0.36 +0.8
375,355 + GFF634 0.36 +2.5
375,356 - GFF634 0.36 -2.8
375,380 + GFF634 0.40 +0.1
375,380 + GFF634 0.40 -0.6
375,468 + GFF634 0.51 +0.5
375,537 - GFF634 0.60 +0.1
375,574 + GFF634 0.65 +2.2
375,713 + GFF634 0.83 +1.3
375,714 - GFF634 0.84 +3.5
375,719 + GFF634 0.84 -0.3
375,725 + GFF634 0.85 +0.9
375,764 + -0.2
375,776 - +1.1
375,836 + -0.2
375,891 + +0.2
375,891 + -0.5
375,946 - GFF635 0.11 +0.4
375,968 + GFF635 0.14 +4.7
375,998 - GFF635 0.17 +1.0
376,002 - GFF635 0.17 -1.4
376,123 - GFF635 0.29 -0.7
376,124 + GFF635 0.29 +1.6
376,124 + GFF635 0.29 +0.3
376,129 - GFF635 0.30 +1.1
376,167 - GFF635 0.33 -1.1
376,533 + GFF635 0.70 +0.8

Or see this region's nucleotide sequence