Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF632

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF631 and GFF632 are separated by 180 nucleotidesGFF632 and GFF633 are separated by 17 nucleotidesGFF633 and GFF634 overlap by 8 nucleotides GFF631 - DamX, an inner membrane protein involved in bile resistance, at 372,098 to 373,375 GFF631 GFF632 - Methyl-directed repair DNA adenine methylase (EC 2.1.1.72), at 373,556 to 374,392 GFF632 GFF633 - Ribulose-phosphate 3-epimerase (EC 5.1.3.1), at 374,410 to 375,087 GFF633 GFF634 - Phosphoglycolate phosphatase (EC 3.1.3.18), at 375,080 to 375,838 GFF634 Position (kb) 373 374 375Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 372.877 kb on + strand, within GFF631at 373.130 kb on + strand, within GFF631at 373.206 kb on - strand, within GFF631at 373.212 kb on + strand, within GFF631at 373.213 kb on - strand, within GFF631at 373.214 kb on + strand, within GFF631at 373.244 kb on + strand, within GFF631at 373.265 kb on + strandat 373.265 kb on + strandat 373.265 kb on + strandat 373.265 kb on + strandat 373.265 kb on + strandat 373.265 kb on + strandat 373.266 kb on - strandat 373.266 kb on - strandat 373.286 kb on - strandat 373.419 kb on + strandat 373.419 kb on + strandat 373.494 kb on - strandat 373.541 kb on - strandat 373.544 kb on + strandat 373.703 kb on + strand, within GFF632at 373.703 kb on + strand, within GFF632at 373.744 kb on + strand, within GFF632at 373.762 kb on + strand, within GFF632at 373.762 kb on + strand, within GFF632at 373.763 kb on - strand, within GFF632at 373.777 kb on - strand, within GFF632at 373.826 kb on + strand, within GFF632at 373.827 kb on - strand, within GFF632at 374.036 kb on + strand, within GFF632at 374.059 kb on + strand, within GFF632at 374.305 kb on + strand, within GFF632at 374.419 kb on + strandat 374.420 kb on - strandat 374.533 kb on + strand, within GFF633at 374.534 kb on - strand, within GFF633at 374.718 kb on - strand, within GFF633at 374.718 kb on - strand, within GFF633at 374.742 kb on + strand, within GFF633at 374.783 kb on - strand, within GFF633at 374.791 kb on + strand, within GFF633at 375.085 kb on + strandat 375.331 kb on + strand, within GFF634at 375.331 kb on + strand, within GFF634at 375.331 kb on + strand, within GFF634at 375.332 kb on - strand, within GFF634at 375.352 kb on - strand, within GFF634at 375.355 kb on + strand, within GFF634at 375.356 kb on - strand, within GFF634at 375.380 kb on + strand, within GFF634at 375.380 kb on + strand, within GFF634

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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372,877 + GFF631 0.61 +1.7
373,130 + GFF631 0.81 +1.0
373,206 - GFF631 0.87 -0.4
373,212 + GFF631 0.87 +0.6
373,213 - GFF631 0.87 -0.6
373,214 + GFF631 0.87 +0.7
373,244 + GFF631 0.90 +1.1
373,265 + +2.3
373,265 + +0.3
373,265 + +1.8
373,265 + +0.7
373,265 + +1.8
373,265 + +1.0
373,266 - -0.9
373,266 - +0.1
373,286 - +0.6
373,419 + +1.1
373,419 + +1.7
373,494 - +0.9
373,541 - +0.5
373,544 + +0.9
373,703 + GFF632 0.18 -0.8
373,703 + GFF632 0.18 -1.2
373,744 + GFF632 0.22 -1.0
373,762 + GFF632 0.25 -2.9
373,762 + GFF632 0.25 -1.7
373,763 - GFF632 0.25 -0.2
373,777 - GFF632 0.26 +0.6
373,826 + GFF632 0.32 -1.0
373,827 - GFF632 0.32 -2.5
374,036 + GFF632 0.57 -1.4
374,059 + GFF632 0.60 +0.2
374,305 + GFF632 0.89 -0.4
374,419 + -1.8
374,420 - -0.1
374,533 + GFF633 0.18 +0.4
374,534 - GFF633 0.18 -1.4
374,718 - GFF633 0.45 -1.7
374,718 - GFF633 0.45 -0.4
374,742 + GFF633 0.49 -0.1
374,783 - GFF633 0.55 -2.0
374,791 + GFF633 0.56 -0.5
375,085 + +0.3
375,331 + GFF634 0.33 -1.3
375,331 + GFF634 0.33 -1.6
375,331 + GFF634 0.33 +0.2
375,332 - GFF634 0.33 -1.9
375,352 - GFF634 0.36 +0.8
375,355 + GFF634 0.36 +2.5
375,356 - GFF634 0.36 -2.8
375,380 + GFF634 0.40 +0.1
375,380 + GFF634 0.40 -0.6

Or see this region's nucleotide sequence