Strain Fitness in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 around GFF617

Experiment: LB_plus_SM_buffer with S16_phage 15 MOI

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF615 and GFF616 are separated by 53 nucleotidesGFF616 and GFF617 are separated by 191 nucleotidesGFF617 and GFF618 are separated by 109 nucleotides GFF615 - Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49), at 354,897 to 356,516 GFF615 GFF616 - hypothetical protein, at 356,570 to 356,704 GFF616 GFF617 - Putative transport protein, at 356,896 to 358,605 GFF617 GFF618 - 33 kDa chaperonin (Heat shock protein 33) (HSP33), at 358,715 to 359,599 GFF618 Position (kb) 356 357 358 359Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 355.925 kb on + strand, within GFF615at 356.018 kb on + strand, within GFF615at 356.240 kb on + strand, within GFF615at 356.279 kb on + strand, within GFF615at 356.306 kb on + strand, within GFF615at 356.306 kb on + strand, within GFF615at 356.306 kb on + strand, within GFF615at 356.307 kb on - strand, within GFF615at 356.308 kb on + strand, within GFF615at 356.308 kb on + strand, within GFF615at 356.308 kb on + strand, within GFF615at 356.308 kb on + strand, within GFF615at 356.309 kb on - strand, within GFF615at 356.309 kb on - strand, within GFF615at 356.309 kb on - strand, within GFF615at 356.309 kb on - strand, within GFF615at 356.312 kb on + strand, within GFF615at 356.370 kb on - strandat 356.373 kb on + strandat 356.373 kb on + strandat 356.390 kb on - strandat 356.408 kb on + strandat 356.423 kb on - strandat 356.434 kb on + strandat 356.476 kb on + strandat 356.477 kb on - strandat 356.538 kb on + strandat 356.539 kb on - strandat 356.539 kb on - strandat 356.539 kb on - strandat 356.540 kb on + strandat 356.593 kb on + strand, within GFF616at 356.600 kb on - strand, within GFF616at 356.736 kb on + strandat 356.737 kb on - strandat 356.761 kb on + strandat 356.919 kb on + strandat 356.920 kb on - strandat 356.922 kb on + strandat 356.922 kb on + strandat 356.971 kb on + strandat 356.972 kb on - strandat 356.972 kb on - strandat 357.003 kb on + strandat 357.020 kb on - strandat 357.020 kb on - strandat 357.020 kb on - strandat 357.024 kb on + strandat 357.057 kb on - strandat 357.057 kb on - strandat 357.064 kb on - strandat 357.078 kb on + strand, within GFF617at 357.202 kb on + strand, within GFF617at 357.253 kb on + strand, within GFF617at 357.320 kb on + strand, within GFF617at 357.320 kb on + strand, within GFF617at 357.448 kb on - strand, within GFF617at 357.452 kb on - strand, within GFF617at 357.591 kb on + strand, within GFF617at 357.603 kb on - strand, within GFF617at 357.719 kb on + strand, within GFF617at 357.741 kb on - strand, within GFF617at 357.781 kb on + strand, within GFF617at 357.781 kb on + strand, within GFF617at 357.782 kb on - strand, within GFF617at 357.782 kb on - strand, within GFF617at 357.783 kb on + strand, within GFF617at 357.783 kb on + strand, within GFF617at 357.783 kb on + strand, within GFF617at 357.783 kb on + strand, within GFF617at 357.783 kb on + strand, within GFF617at 357.784 kb on - strand, within GFF617at 357.784 kb on - strand, within GFF617at 357.826 kb on + strand, within GFF617at 357.895 kb on + strand, within GFF617at 357.911 kb on + strand, within GFF617at 357.953 kb on + strand, within GFF617at 357.984 kb on - strand, within GFF617at 358.007 kb on + strand, within GFF617at 358.023 kb on + strand, within GFF617at 358.024 kb on - strand, within GFF617at 358.041 kb on + strand, within GFF617at 358.057 kb on - strand, within GFF617at 358.090 kb on + strand, within GFF617at 358.092 kb on + strand, within GFF617at 358.159 kb on - strand, within GFF617at 358.210 kb on - strand, within GFF617at 358.399 kb on + strand, within GFF617at 358.400 kb on - strand, within GFF617at 358.407 kb on + strand, within GFF617at 358.430 kb on - strand, within GFF617at 358.436 kb on + strandat 358.491 kb on + strandat 358.529 kb on + strandat 358.557 kb on + strandat 358.786 kb on - strandat 359.027 kb on - strand, within GFF618at 359.191 kb on + strand, within GFF618at 359.220 kb on + strand, within GFF618at 359.243 kb on - strand, within GFF618at 359.433 kb on - strand, within GFF618at 359.574 kb on - strandat 359.574 kb on - strandat 359.594 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_plus_SM_buffer with S16_phage 15 MOI
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355,925 + GFF615 0.63 +0.0
356,018 + GFF615 0.69 -0.2
356,240 + GFF615 0.83 -0.4
356,279 + GFF615 0.85 -0.6
356,306 + GFF615 0.87 +0.3
356,306 + GFF615 0.87 +0.2
356,306 + GFF615 0.87 -0.3
356,307 - GFF615 0.87 +0.1
356,308 + GFF615 0.87 +0.8
356,308 + GFF615 0.87 +0.4
356,308 + GFF615 0.87 +0.1
356,308 + GFF615 0.87 +0.4
356,309 - GFF615 0.87 +0.5
356,309 - GFF615 0.87 -1.4
356,309 - GFF615 0.87 +0.9
356,309 - GFF615 0.87 +0.5
356,312 + GFF615 0.87 +2.8
356,370 - +0.5
356,373 + -0.4
356,373 + -0.1
356,390 - +0.1
356,408 + +0.5
356,423 - -0.0
356,434 + +0.4
356,476 + -0.2
356,477 - -2.4
356,538 + -0.1
356,539 - -0.6
356,539 - -0.3
356,539 - -0.4
356,540 + -0.3
356,593 + GFF616 0.17 -0.1
356,600 - GFF616 0.22 -0.0
356,736 + +0.4
356,737 - -0.5
356,761 + -0.4
356,919 + +0.4
356,920 - -2.9
356,922 + -0.8
356,922 + -0.4
356,971 + -0.4
356,972 - +0.3
356,972 - +0.0
357,003 + +0.4
357,020 - -0.0
357,020 - -0.3
357,020 - +0.6
357,024 + +0.5
357,057 - +0.3
357,057 - +1.4
357,064 - -0.2
357,078 + GFF617 0.11 -0.5
357,202 + GFF617 0.18 +0.8
357,253 + GFF617 0.21 -0.6
357,320 + GFF617 0.25 -0.1
357,320 + GFF617 0.25 +0.7
357,448 - GFF617 0.32 -0.0
357,452 - GFF617 0.33 +0.9
357,591 + GFF617 0.41 +0.7
357,603 - GFF617 0.41 -0.1
357,719 + GFF617 0.48 -0.0
357,741 - GFF617 0.49 +1.0
357,781 + GFF617 0.52 +0.6
357,781 + GFF617 0.52 +1.6
357,782 - GFF617 0.52 +0.0
357,782 - GFF617 0.52 -2.2
357,783 + GFF617 0.52 -0.3
357,783 + GFF617 0.52 +0.5
357,783 + GFF617 0.52 -0.1
357,783 + GFF617 0.52 -0.3
357,783 + GFF617 0.52 +0.8
357,784 - GFF617 0.52 -3.5
357,784 - GFF617 0.52 -0.6
357,826 + GFF617 0.54 -0.2
357,895 + GFF617 0.58 -0.1
357,911 + GFF617 0.59 +0.2
357,953 + GFF617 0.62 +1.5
357,984 - GFF617 0.64 +0.3
358,007 + GFF617 0.65 +1.0
358,023 + GFF617 0.66 -0.3
358,024 - GFF617 0.66 -0.4
358,041 + GFF617 0.67 +0.2
358,057 - GFF617 0.68 -0.2
358,090 + GFF617 0.70 -0.5
358,092 + GFF617 0.70 -0.1
358,159 - GFF617 0.74 -0.7
358,210 - GFF617 0.77 -2.2
358,399 + GFF617 0.88 -0.0
358,400 - GFF617 0.88 +0.5
358,407 + GFF617 0.88 +0.6
358,430 - GFF617 0.90 +1.1
358,436 + -0.2
358,491 + -0.4
358,529 + -0.4
358,557 + -0.2
358,786 - +1.4
359,027 - GFF618 0.35 +1.6
359,191 + GFF618 0.54 +1.4
359,220 + GFF618 0.57 +1.5
359,243 - GFF618 0.60 +1.4
359,433 - GFF618 0.81 +1.7
359,574 - +0.9
359,574 - +1.0
359,594 - +1.1

Or see this region's nucleotide sequence